Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0021326g0010 Nicotiana tabacum HOM05D004477 ORTHO05D005615 2.6e-50 201.8 108 100.0
Nitab4.5_0000624g0090 Nicotiana tabacum HOM05D004477 ORTHO05D005615 4.6e-47 191.0 102 99.0
Solyc01g007250.4 Solanum lycopersicum HOM05D004477 ORTHO05D005615 3.3e-45 184.9 102 97.1
Sopen01g003240 Solanum pennellii HOM05D004477 ORTHO05D005615 3.3e-45 184.9 102 97.1
PGSC0003DMG400000394 Solanum tuberosum HOM05D004477 ORTHO05D005615 3.3e-45 184.9 102 97.1
PGSC0003DMG400016389 Solanum tuberosum HOM05D004477 ORTHO05D005615 3.3e-45 184.9 102 97.1
MSTRG.2896 Avicennia marina HOM05D004477 ORTHO05D005615 6.2e-44 180.6 102 94.1
GSVIVG01000834001 Vitis vinifera HOM05D004477 ORTHO05D005615 8.2e-44 180.3 102 95.1
CAN.G574.29 Capsicum annuum HOM05D004477 ORTHO05D005615 1.4e-43 179.5 102 93.1
Ciclev10032276m.g Citrus clementina HOM05D004477 ORTHO05D005615 2.4e-43 178.7 102 93.1
Atru.chr3.2871 Acer truncatum HOM05D004477 ORTHO05D005615 4.0e-43 177.9 102 93.1
CSS0003663 Camellia sinensis var. sinensis HOM05D004477 ORTHO05D005615 5.3e-43 177.6 102 91.2
CSS0028927 Camellia sinensis var. sinensis HOM05D004477 ORTHO05D005615 5.3e-43 177.6 102 91.2
Cpa.g.sc51.97 Carica papaya HOM05D004477 ORTHO05D005615 6.9e-43 177.2 102 92.2
TWI15G0640 Tripterygium wilfordii HOM05D004477 ORTHO05D005615 1.2e-42 176.4 102 93.1
Cc06_g06430 Coffea canephora HOM05D004477 ORTHO05D005615 1.5e-42 176.0 102 91.2
vmacro13733 Vaccinium macrocarpon HOM05D004477 ORTHO05D005615 1.5e-42 176.0 102 90.2
Dinv32044 Davidia involucrata HOM05D004477 ORTHO05D005615 2.0e-42 175.6 103 91.3
Potri.001G024500 Populus trichocarpa HOM05D004477 ORTHO05D005615 2.6e-42 175.3 102 92.2
Potri.003G201100 Populus trichocarpa HOM05D004477 ORTHO05D005615 2.6e-42 175.3 102 92.2
Sabra03G0148700 Salix brachista HOM05D004477 ORTHO05D005615 2.6e-42 175.3 102 92.2
Actinidia06268 Actinidia chinensis HOM05D004477 ORTHO05D005615 3.4e-42 174.9 102 90.2
TAR623G1431 Trochodendron aralioides HOM05D004477 ORTHO05D005615 3.4e-42 174.9 102 91.2
Nn7g36505 Nelumbo nucifera HOM05D004477 ORTHO05D005615 5.8e-42 174.1 102 91.2
HanXRQChr15g0469031 Helianthus annuus HOM05D004477 ORTHO05D005615 7.6e-42 173.7 102 90.2
THA.LOC104800270 Tarenaya hassleriana HOM05D004477 ORTHO05D005615 1.0e-41 173.3 102 89.2
Lsat_1_v5_gn_5_69441 Lactuca sativa HOM05D004477 ORTHO05D005615 2.9e-41 171.8 102 89.2
arahy.Tifrunner.gnm1.ann1.95EFUZ Arachis hypogaea HOM05D004477 ORTHO05D005615 3.8e-41 171.4 102 89.2
arahy.Tifrunner.gnm1.ann1.T70L3V Arachis hypogaea HOM05D004477 ORTHO05D005615 3.8e-41 171.4 102 89.2
CDE05G2398 Ceratophyllum demersum HOM05D004477 ORTHO05D005615 3.8e-41 171.4 102 89.2
Manes.11G003480 Manihot esculenta HOM05D004477 ORTHO05D005615 3.8e-41 171.4 102 90.2
PGR031G2712 Punica granatum HOM05D004477 ORTHO05D005615 3.8e-41 171.4 102 90.2
Eucgr.G03251 Eucalyptus grandis HOM05D004477 ORTHO05D005615 4.9e-41 171.0 102 89.2
Glyma.11G152600 Glycine max HOM05D004477 ORTHO05D005615 4.9e-41 171.0 102 90.2
Lj3g0011019 Lotus japonicus HOM05D004477 ORTHO05D005615 4.9e-41 171.0 102 90.2
Ca_14282_v3 Cicer arietinum L. HOM05D004477 ORTHO05D005615 6.5e-41 170.6 102 90.2
THA.LOC104824184 Tarenaya hassleriana HOM05D004477 ORTHO05D005615 6.5e-41 170.6 102 88.2
arahy.Tifrunner.gnm1.ann1.5IKX6D Arachis hypogaea HOM05D004477 ORTHO05D005615 1.1e-40 169.9 102 88.2
arahy.Tifrunner.gnm1.ann1.8LX4B2 Arachis hypogaea HOM05D004477 ORTHO05D005615 1.1e-40 169.9 102 88.2
Thecc.10G006900 Theobroma cacao HOM05D004477 ORTHO05D005615 1.1e-40 169.9 102 88.2
VMungo1080G0371 Vigna mungo HOM05D004477 ORTHO05D005615 1.1e-40 169.9 102 89.2
Cfa019303 Carpinus fangiana HOM05D004477 ORTHO05D005615 1.4e-40 169.5 102 87.3
Cfa019574 Carpinus fangiana HOM05D004477 ORTHO05D005615 1.4e-40 169.5 102 87.3
Haze_09336 Corylus avellana HOM05D004477 ORTHO05D005615 1.4e-40 169.5 102 87.3
Glyma.04G139900 Glycine max HOM05D004477 ORTHO05D005615 2.5e-40 168.7 102 89.2
Haze_07686 Corylus avellana HOM05D004477 ORTHO05D005615 3.2e-40 168.3 102 86.3
Lalb_Chr20g0109051 Lupinus albus HOM05D004477 ORTHO05D005615 3.2e-40 168.3 102 87.3
MD10G1031800 Malus domestica HOM05D004477 ORTHO05D005615 3.2e-40 168.3 102 88.2
TAR633G1412 Trochodendron aralioides HOM05D004477 ORTHO05D005615 3.2e-40 168.3 108 86.1
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 3.2e-40 168.3 102 87.3
Aa31LG2G960 Aethionema arabicum HOM05D004477 ORTHO05D005615 4.2e-40 167.9 102 85.3
Duzib128G1167 Durio zibethinus HOM05D004477 ORTHO05D005615 4.2e-40 167.9 102 87.3
HPP92_017907 Vanilla planifolia HOM05D004477 ORTHO05D005615 4.2e-40 167.9 102 90.2
CiPaw.11G047300 Carya illinoinensis HOM05D004477 ORTHO05D005615 5.5e-40 167.5 102 86.3
MELO3C005127.2 Cucumis melo HOM05D004477 ORTHO05D005615 5.5e-40 167.5 102 88.2
CsaV3_5G024730 Cucumis sativus L. HOM05D004477 ORTHO05D005615 5.5e-40 167.5 102 88.2
QL04p014055 Quercus lobata HOM05D004477 ORTHO05D005615 5.5e-40 167.5 102 86.3
DCAR_030970 Daucus carota HOM05D004477 ORTHO05D005615 7.1e-40 167.2 102 86.3
Sed0015395 Sechium edule HOM05D004477 ORTHO05D005615 7.1e-40 167.2 102 87.3
AUR62026831 Chenopodium quinoa HOM05D004477 ORTHO05D005615 9.3e-40 166.8 102 87.3
AUR62037222 Chenopodium quinoa HOM05D004477 ORTHO05D005615 9.3e-40 166.8 102 87.3
MD05G1030400 Malus domestica HOM05D004477 ORTHO05D005615 9.3e-40 166.8 102 87.3
Phvul.005G031000 Phaseolus vulgaris HOM05D004477 ORTHO05D005615 9.3e-40 166.8 102 88.2
Gohir.A06G159200 Gossypium hirsutum HOM05D004477 ORTHO05D005615 1.2e-39 166.4 102 87.3
Gohir.D12G108500 Gossypium hirsutum HOM05D004477 ORTHO05D005615 1.2e-39 166.4 102 87.3
Gorai.010G192500 Gossypium raimondii HOM05D004477 ORTHO05D005615 1.2e-39 166.4 102 87.3
ClCG01G007690 Citrullus lanatus HOM05D004477 ORTHO05D005615 1.6e-39 166.0 102 87.3
Thhalv10023618m.g Eutrema salsugineum HOM05D004477 ORTHO05D005615 2.1e-39 165.6 102 84.3
EL10Ac2g02848 Beta vulgaris HOM05D004477 ORTHO05D005615 2.7e-39 165.2 102 84.3
BcaC04g22503 Brassica carinata HOM05D004477 ORTHO05D005615 3.5e-39 164.9 102 84.3
A09p15310 Brassica napus HOM05D004477 ORTHO05D005615 3.5e-39 164.9 102 84.3
C09p18580 Brassica napus HOM05D004477 ORTHO05D005615 3.5e-39 164.9 102 84.3
BolC9t54754H Brassica oleracea HOM05D004477 ORTHO05D005615 3.5e-39 164.9 102 84.3
BraA09t37176Z Brassica rapa HOM05D004477 ORTHO05D005615 3.5e-39 164.9 102 84.3
BcaB07g31410 Brassica carinata HOM05D004477 ORTHO05D005615 4.6e-39 164.5 102 84.3
CARHR047410 Cardamine hirsuta HOM05D004477 ORTHO05D005615 6.0e-39 164.1 102 83.3
COL.COLO4_25826 Corchorus olitorius HOM05D004477 ORTHO05D005615 6.0e-39 164.1 102 85.3
Gohir.D06G165100 Gossypium hirsutum HOM05D004477 ORTHO05D005615 6.0e-39 164.1 102 86.3
Prupe.2G030400 Prunus persica HOM05D004477 ORTHO05D005615 6.0e-39 164.1 102 85.3
Prupe.8G084800 Prunus persica HOM05D004477 ORTHO05D005615 6.0e-39 164.1 103 83.5
Sc10g0004300 Simmondsia chinensis HOM05D004477 ORTHO05D005615 6.0e-39 164.1 102 85.3
Aqoxy7G00557 Aquilegia oxysepala HOM05D004477 ORTHO05D005615 7.9e-39 163.7 102 86.3
Sp2g00900 Schrenkiella parvula HOM05D004477 ORTHO05D005615 7.9e-39 163.7 102 84.3
Ah.03g137500 Amaranthus hybridus HOM05D004477 ORTHO05D005615 1.0e-38 163.3 103 84.5
Psat5g217400 Pisum sativum HOM05D004477 ORTHO05D005615 1.0e-38 163.3 102 84.3
AL2G11360 Arabidopsis lyrata HOM05D004477 ORTHO05D005615 1.3e-38 162.9 102 83.3
Oeu049664.1 Olea europaea HOM05D004477 ORTHO05D005615 1.3e-38 162.9 136 69.9
Medtr3g019370 Medicago truncatula HOM05D004477 ORTHO05D005615 2.3e-38 162.2 102 86.3
Psat4g000640 Pisum sativum HOM05D004477 ORTHO05D005615 2.3e-38 162.2 102 84.3
Hund13333 Selenicereus undatus HOM05D004477 ORTHO05D005615 2.3e-38 162.2 102 82.4
SalBow7G4685 Salvia bowleyana HOM05D004477 ORTHO05D005615 3.9e-38 161.4 115 79.1
Carub.0002s0106 Capsella rubella HOM05D004477 ORTHO05D005615 8.7e-38 160.2 102 83.3
Psat4g015320 Pisum sativum HOM05D004477 ORTHO05D005615 8.7e-38 160.2 102 82.4
Migut.H00453 Erythranthe guttata HOM05D004477 ORTHO05D005615 1.1e-37 159.8 102 82.4
PSO017G0587 Papaver somniferum HOM05D004477 ORTHO05D005615 4.3e-37 157.9 102 80.4
Sopen11g025700 Solanum pennellii HOM05D004477 ORTHO05D005615 5.7e-37 157.5 102 85.3
CANSAT80G2023 Cannabis sativa HOM05D004477 ORTHO05D005615 1.6e-36 156.0 102 81.4
PSO478G1616 Papaver somniferum HOM05D004477 ORTHO05D005615 2.2e-36 155.6 102 79.4
Mapoly0031s0129 Marchantia polymorpha HOM05D004477 ORTHO05D005615 8.2e-36 153.7 102 83.3
ATR0307G081 Amborella trichopoda HOM05D004477 ORTHO05D005615 1.4e-35 152.9 102 80.4
AT1G63780 Arabidopsis thaliana HOM05D004477 ORTHO05D005615 3.1e-35 151.8 102 78.4
SMO118G0432 Selaginella moellendorffii HOM05D004477 ORTHO05D005615 1.2e-34 149.8 102 78.4
Pp3c25_4340 Physcomitrium patens HOM05D004477 ORTHO05D005615 2.6e-34 148.7 102 79.4
Pp3c25_4350 Physcomitrium patens HOM05D004477 ORTHO05D005615 2.6e-34 148.7 102 79.4
Sed0014614 Sechium edule HOM05D004477 ORTHO05D005615 2.6e-34 148.7 102 79.4
ECA233G2007 Erigeron canadensis HOM05D004477 ORTHO05D005615 5.9e-34 147.5 102 78.4
RcHm_v2.0_Chr1g0321121 Rosa chinensis HOM05D004477 ORTHO05D005615 7.6e-34 147.1 102 77.5
BcaB07g31550 Brassica carinata HOM05D004477 ORTHO05D005615 1.3e-33 146.4 103 77.7
FAN03G1284 Fragaria x ananassa HOM05D004477 ORTHO05D005615 1.3e-33 146.4 102 77.5
FAN10G1920 Fragaria x ananassa HOM05D004477 ORTHO05D005615 1.3e-33 146.4 102 77.5
FvH4_7g02470 Fragaria vesca HOM05D004477 ORTHO05D005615 1.7e-33 146.0 102 77.5
FAN06G1855 Fragaria x ananassa HOM05D004477 ORTHO05D005615 1.7e-33 146.0 102 77.5
Prupe.2G030500 Prunus persica HOM05D004477 ORTHO05D005615 1.7e-33 146.0 96 82.3
Gorai.008G117500 Gossypium raimondii HOM05D004477 ORTHO05D005615 2.9e-33 145.2 88 86.4
Cre10.g454100 Chlamydomonas reinhardtii HOM05D004477 ORTHO05D005615 1.4e-32 142.9 102 71.6
Zm00001eb226560 Zea mays HOM05D004477 ORTHO05D005615 1.4e-32 142.9 102 74.5
Pp3c25_4370 Physcomitrium patens HOM05D004477 ORTHO05D005615 9.3e-32 140.2 99 77.8
Rhsim07G0063100 Rhododendron simsii HOM05D004477 ORTHO05D005615 2.1e-31 139.0 102 73.5
Prupe.I005600 Prunus persica HOM05D004477 ORTHO05D005615 2.7e-31 138.7 125 64.0
CBR_g37218 Chara braunii HOM05D004477 ORTHO05D005615 6.7e-30 134.0 102 72.5
MCO12G196 Micromonas commoda HOM05D004477 ORTHO05D005615 8.2e-28 127.1 102 68.6
PRCOL_00000378 Prasinoderma coloniale HOM05D004477 ORTHO05D005615 8.2e-28 127.1 103 68.9
Prupe.8G084000 Prunus persica HOM05D004477 ORTHO05D005615 8.2e-28 127.1 116 63.8
FvH4_7g04360 Fragaria vesca HOM05D004477 ORTHO05D005615 1.4e-27 126.3 103 68.0
Peaxi162Scf01810g00112 Petunia axillaris HOM05D004477 ORTHO05D005615 1.2e-26 123.2 102 71.6
Prupe.4G022800 Prunus persica HOM05D004477 ORTHO05D005615 3.4e-26 121.7 102 68.6
FAN10G2896 Fragaria x ananassa HOM05D004477 ORTHO05D005615 1.0e-25 120.2 102 64.7
Lj7A582G32 Lonicera japonica HOM05D004477 ORTHO05D005615 5.0e-25 117.9 103 68.9
Solyc11g065960.3 Solanum lycopersicum HOM05D004477 ORTHO05D005615 2.5e-24 115.5 65 96.9
SGA_v2.0_scaffold15G07263 Striga asiatica HOM05D004477 ORTHO05D005615 7.2e-24 114.0 102 65.7
SGA_v2.0_scaffold289G47250 Striga asiatica HOM05D004477 ORTHO05D005615 7.2e-24 114.0 108 63.0
Peaxi162Scf00211g01210 Petunia axillaris HOM05D004477 ORTHO05D005615 6.7e-22 107.5 102 61.8
TPR.G3866 Trifolium pratense HOM05D004477 ORTHO05D005615 4.5e-18 94.7 65 80.0
TPR.G771 Trifolium pratense HOM05D004477 ORTHO05D005615 5.9e-18 94.4 65 80.0
FAN03G0199 Fragaria x ananassa HOM05D004477 ORTHO05D005615 2.2e-17 92.4 103 56.3
Solyc11g065980.3 Solanum lycopersicum HOM05D004477 ORTHO05D005615 1.3e-12 76.6 51 74.5
Haze_26453 Corylus avellana HOM05D004477 ORTHO05D005615 1.7e-12 76.3 103 46.6
Os08g0155000 Oryza sativa ssp. japonica HOM05D004477 ORTHO05D005615 2.0e-10 69.3 102 48.0
SalBow5G3206 Salvia bowleyana HOM05D031228 ORTHO05D030301 1.0e-09 67.0 87 56.3
BolC4t24495H Brassica oleracea HOM05D004477 ORTHO05D005615 2.3e-06 55.8 44 65.9
AagrBONN_evm.TU.Sc2ySwM_228.4108 Anthoceros agrestis HOM05D004477 ORTHO05D005615 4.0e-06 55.1 32 81.2
SGA_v2.0_scaffold162G37895 Striga asiatica HOM05D004477 ORTHO05D005615 6.7e-06 54.3 55 58.2


User provided reference genes

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