Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0014335g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 6.2e-121 437.6 236 100.0
Nitab4.5_0002344g0060 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.2e-87 327.0 232 80.6
PGSC0003DMG400024746 Solanum tuberosum HOM05D003241 ORTHO05D003812 3.6e-52 209.1 224 59.4
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 2.6e-50 203.0 226 59.3
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 9.8e-50 201.1 225 57.3
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 9.8e-50 201.1 225 57.3
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 2.8e-49 199.5 226 60.6
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 4.8e-49 198.7 227 61.2
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 5.4e-48 195.3 228 59.6
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 5.4e-48 195.3 218 59.6
Peaxi162Scf00067g00244 Petunia axillaris HOM05D003241 ORTHO05D003812 7.7e-47 191.4 225 55.6
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 9.8e-42 174.5 232 49.1
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 9.1e-40 167.9 236 46.6
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 9.1e-40 167.9 236 47.5
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 2.0e-39 166.8 236 49.2
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 2.0e-39 166.8 232 47.8
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 2.0e-39 166.8 239 49.4
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 2.7e-39 166.4 233 49.8
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 3.5e-39 166.0 239 49.0
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 4.5e-39 165.6 232 48.7
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 5.9e-39 165.2 239 48.5
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 1.0e-38 164.5 234 47.0
Solyc01g099380.4 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.0e-38 164.5 226 49.1
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 1.7e-38 163.7 234 48.7
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 1.7e-38 163.7 239 50.6
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 2.3e-38 163.3 238 48.7
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 2.3e-38 163.3 233 49.8
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 6.6e-38 161.8 239 50.6
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 1.5e-37 160.6 243 44.9
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 4.3e-37 159.1 241 47.7
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 7.2e-37 158.3 238 47.1
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 9.5e-37 157.9 245 45.3
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 9.5e-37 157.9 231 45.9
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 1.6e-36 157.1 235 46.0
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 1.6e-36 157.1 234 46.2
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 2.1e-36 156.8 238 46.2
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 2.8e-36 156.4 251 44.2
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 2.8e-36 156.4 239 46.0
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 2.8e-36 156.4 245 46.5
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 8.0e-36 154.8 242 45.9
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 8.0e-36 154.8 234 46.6
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 8.0e-36 154.8 239 46.0
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 1.0e-35 154.5 251 43.8
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 1.0e-35 154.5 239 46.4
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 1.0e-35 154.5 239 46.4
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 1.4e-35 154.1 243 45.3
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 1.8e-35 153.7 253 43.5
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 2.3e-35 153.3 239 44.8
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 2.3e-35 153.3 239 44.8
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 2.3e-35 153.3 231 45.9
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 3.0e-35 152.9 223 45.3
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 3.0e-35 152.9 231 45.9
Psat6g151960 Pisum sativum HOM05D003241 ORTHO05D003812 4.0e-35 152.5 217 49.3
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 5.2e-35 152.1 233 45.9
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 8.9e-35 151.4 239 44.4
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 1.2e-34 151.0 227 45.8
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.2e-34 151.0 269 41.3
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 1.5e-34 150.6 250 43.6
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 1.5e-34 150.6 238 45.0
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 2.0e-34 150.2 234 44.9
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 2.6e-34 149.8 237 46.8
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 2.6e-34 149.8 238 45.4
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 3.4e-34 149.4 254 42.9
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 4.4e-34 149.1 232 46.1
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 4.4e-34 149.1 238 45.4
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 5.7e-34 148.7 243 43.6
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 5.7e-34 148.7 243 43.6
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 1.3e-33 147.5 231 44.6
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 1.3e-33 147.5 237 43.0
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 1.3e-33 147.5 242 41.7
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 2.9e-33 146.4 250 42.0
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 3.7e-33 146.0 232 43.5
Actinidia38515 Actinidia chinensis HOM05D003241 ORTHO05D003812 6.4e-33 145.2 229 45.4
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 6.4e-33 145.2 234 44.0
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 8.3e-33 144.8 262 42.0
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 1.1e-32 144.4 267 40.8
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 1.4e-32 144.1 240 44.2
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 1.8e-32 143.7 231 45.5
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 2.4e-32 143.3 247 43.3
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 3.2e-32 142.9 232 46.1
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 3.2e-32 142.9 232 46.1
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 4.1e-32 142.5 254 42.5
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 9.2e-32 141.4 238 43.7
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 1.2e-31 141.0 235 43.8
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 1.6e-31 140.6 250 41.2
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 2.0e-31 140.2 230 45.2
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 1.3e-30 137.5 233 43.8
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 1.3e-30 137.5 238 42.9
Sopen01g042940 Solanum pennellii HOM05D003241 ORTHO05D003812 1.7e-30 137.1 150 59.3
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 3.0e-30 136.3 239 44.4
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 3.9e-30 136.0 219 42.9
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 3.9e-30 136.0 271 41.0
BcaC04g18849 Brassica carinata HOM05D003241 ORTHO05D003812 5.0e-30 135.6 208 44.7
Lj6g0011042 Lotus japonicus HOM05D003241 ORTHO05D003812 5.0e-30 135.6 231 42.4
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 5.0e-30 135.6 242 42.1
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 6.6e-30 135.2 234 41.0
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 8.6e-30 134.8 262 41.2
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 1.9e-29 133.7 261 39.5
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 1.9e-29 133.7 261 39.5
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 2.5e-29 133.3 251 40.2
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 2.5e-29 133.3 270 39.6
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 2.5e-29 133.3 219 42.5
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 2.5e-29 133.3 219 42.0
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.2e-28 131.0 269 37.9
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.6e-28 130.6 269 37.9
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 2.1e-28 130.2 269 37.9
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.1e-28 130.2 271 38.0
Os02g0511500 Oryza sativa ssp. japonica HOM05D003241 ORTHO05D003812 2.8e-28 129.8 263 38.4
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 1.8e-27 127.1 250 38.8
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 2.3e-27 126.7 276 39.5
VMungo1127G0135 Vigna mungo HOM05D003241 ORTHO05D003812 2.3e-27 126.7 226 42.9
Psat0s3089g0040 Pisum sativum HOM05D003241 ORTHO05D003812 3.1e-27 126.3 204 46.6
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 4.0e-27 125.9 270 37.8
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 8.9e-27 124.8 252 36.5
ClCG08G000490 Citrullus lanatus HOM05D003241 ORTHO05D003812 2.6e-26 123.2 115 60.9
vmacro19776 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 4.4e-26 122.5 94 70.2
BcaC04g18848 Brassica carinata HOM05D003241 ORTHO05D003812 1.7e-25 120.6 172 47.7
vmacro19775 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 2.2e-25 120.2 109 61.5
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 8.3e-25 118.2 247 38.1
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 2.4e-24 116.7 223 39.0
QL09p049212 Quercus lobata HOM05D003241 ORTHO05D003812 2.0e-23 113.6 186 45.7
CAN.G1652.14 Capsicum annuum HOM05D003241 ORTHO05D003812 3.5e-23 112.8 134 56.7
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 3.5e-23 112.8 229 38.4
CDE06G2045 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 4.6e-23 112.5 205 42.4
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 6.0e-23 112.1 111 59.5
QL11p041824 Quercus lobata HOM05D003241 ORTHO05D003812 1.7e-22 110.5 214 41.1
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 3.9e-22 109.4 249 35.3
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 6.6e-22 108.6 253 33.6
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 4.3e-21 105.9 204 41.2
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 3.6e-20 102.8 239 35.6
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 1.2e-18 97.8 215 40.9
Eucgr.L02270 Eucalyptus grandis HOM05D001083 ORTHO05D003812 7.5e-18 95.1 80 65.0
Actinidia21372 Actinidia chinensis HOM05D003241 ORTHO05D003812 1.3e-17 94.4 114 47.4
Migut.N01793 Erythranthe guttata HOM05D003241 ORTHO05D003812 1.1e-16 91.3 84 59.5
Sp6g27340 Schrenkiella parvula HOM05D003241 ORTHO05D003812 3.5e-15 86.3 174 34.5
Aa31LG8G1930 Aethionema arabicum HOM05D003241 ORTHO05D000015 6.0e-15 85.5 118 50.0
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 7.8e-15 85.1 176 36.9
AL3G27010 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 1.0e-14 84.7 102 48.0
Hma1.2p1_0765F.1_g215090 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 2.3e-14 83.6 68 69.1
Hma1.2p1_0358F.1_g134820 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 5.1e-14 82.4 68 69.1
SalBow6G1729 Salvia bowleyana HOM05D003241 ORTHO05D003812 5.1e-14 82.4 162 40.7
SalBow6G5488 Salvia bowleyana HOM05D003241 ORTHO05D003812 5.1e-14 82.4 162 40.7
AagrBONN_evm.TU.Sc2ySwM_117.3043 Anthoceros agrestis HOM05D003241 ORTHO05D003812 3.3e-13 79.7 100 48.0
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 7.3e-13 78.6 94 46.8
AT3G14700 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 7.3e-13 78.6 103 46.6
A05p34740 Brassica napus HOM05D003241 ORTHO05D003812 2.8e-12 76.6 105 49.5
Lju445A0T13 Lonicera japonica HOM05D003241 ORTHO05D003812 4.7e-12 75.9 68 61.8
BcaC05g29043 Brassica carinata HOM05D003241 ORTHO05D003812 8.1e-12 75.1 113 47.8
Carub.0003s1438 Capsella rubella HOM05D003241 ORTHO05D003812 1.8e-11 73.9 143 37.1
BcaB06g25362 Brassica carinata HOM05D003241 ORTHO05D003812 2.3e-11 73.6 98 46.9
C05p52560 Brassica napus HOM05D003241 ORTHO05D003812 2.3e-11 73.6 110 48.2
BraA05t22289Z Brassica rapa HOM05D003241 ORTHO05D003812 2.3e-11 73.6 105 48.6
Rhsim06G0183100 Rhododendron simsii HOM05D003241 ORTHO05D003812 2.3e-11 73.6 95 50.5
Thhalv10022422m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 5.2e-11 72.4 92 48.9
Rhsim06G0182100 Rhododendron simsii HOM05D003241 ORTHO05D003812 1.2e-10 71.2 95 49.5
Haze_08784 Corylus avellana HOM05D003241 ORTHO05D003812 3.4e-10 69.7 71 57.7
SMO111G0075 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 3.4e-10 69.7 159 37.7
Atru.chr1.2009 Acer truncatum HOM05D003241 ORTHO05D003812 5.8e-10 68.9 89 46.1
SMO351G0236 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 7.6e-10 68.6 149 38.3
SMO111G0085 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 2.9e-09 66.6 156 36.5
RcHm_v2.0_Chr7g0234901 Rosa chinensis HOM05D003241 ORTHO05D003812 3.7e-09 66.2 234 32.5
Cre03.g156100 Chlamydomonas reinhardtii HOM05D003241 ORTHO05D003812 7.1e-08 62.0 98 39.8
Actinidia16705 Actinidia chinensis HOM05D003241 ORTHO05D003812 9.2e-08 61.6 67 52.2
AagrBONN_evm.TU.Sc2ySwM_344.225 Anthoceros agrestis HOM05D003241 ORTHO05D003812 9.2e-08 61.6 260 27.7
MCO08G320 Micromonas commoda HOM05D003241 ORTHO05D003812 1.2e-07 61.2 103 38.8
Glyma.15G216300 Glycine max HOM05D003241 ORTHO05D003812 1.6e-07 60.8 92 45.7
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 3.5e-07 59.7 204 29.9
MD07G1289000 Malus domestica HOM05D003241 ORTHO05D003812 1.7e-06 57.4 94 40.4
Lj1A444G10 Lonicera japonica HOM05D003241 ORTHO05D003812 5.1e-06 55.8 106 38.7
PRCOL_00003741 Prasinoderma coloniale HOM05D003241 ORTHO05D003812 6.6e-06 55.5 268 26.5


User provided reference genes

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