Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011472g0010 Nicotiana tabacum HOM05D022199 ORTHO05D004363 1.5e-115 419.5 202 100.0
Nitab4.5_0001131g0010 Nicotiana tabacum HOM05D000104 ORTHO05D004363 3.1e-68 262.3 138 95.7
Nitab4.5_0002482g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004363 2.6e-67 259.2 138 94.2
Solyc08g074500.2 Solanum lycopersicum HOM05D000104 ORTHO05D004363 2.8e-61 239.2 138 86.2
Sopen08g023150 Solanum pennellii HOM05D000104 ORTHO05D004363 2.8e-61 239.2 138 86.2
Peaxi162Scf00213g01724 Petunia axillaris HOM05D000104 ORTHO05D004363 4.4e-59 231.9 138 84.8
SGA_v2.0_scaffold269G46291 Striga asiatica HOM05D000104 ORTHO05D004363 4.4e-51 205.3 140 74.3
Migut.A00510 Erythranthe guttata HOM05D000104 ORTHO05D004363 2.2e-50 203.0 140 74.3
Oeu007492.1 Olea europaea HOM05D000104 ORTHO05D004363 4.9e-50 201.8 140 72.9
SGA_v2.0_scaffold27G11711 Striga asiatica HOM05D000104 ORTHO05D004363 1.4e-49 200.3 140 72.1
Dinv37465 Davidia involucrata HOM05D000104 ORTHO05D004363 5.4e-49 198.4 138 74.6
Dinv09442 Davidia involucrata HOM05D000104 ORTHO05D004363 2.1e-48 196.4 138 73.9
CSS0023365 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004363 3.5e-48 195.7 138 72.5
Cc11_g04400 Coffea canephora HOM05D000104 ORTHO05D004363 7.8e-48 194.5 138 70.3
MSTRG.11830 Avicennia marina HOM05D000104 ORTHO05D004363 6.6e-47 191.4 140 68.6
SalBow4G3014 Salvia bowleyana HOM05D000104 ORTHO05D004363 4.3e-46 188.7 138 67.4
Lj7C413G9 Lonicera japonica HOM05D000104 ORTHO05D004363 7.3e-46 188.0 138 67.4
GSVIVG01019359001 Vitis vinifera HOM05D000104 ORTHO05D004363 2.1e-45 186.4 138 68.1
Sed0011777 Sechium edule HOM05D000104 ORTHO05D004363 1.4e-44 183.7 138 67.4
Actinidia03314 Actinidia chinensis HOM05D000104 ORTHO05D004363 2.4e-44 183.0 138 69.6
QL09p044755 Quercus lobata HOM05D000104 ORTHO05D004363 8.9e-44 181.0 138 64.5
Atru.chr2.1616 Acer truncatum HOM05D000104 ORTHO05D004363 1.2e-43 180.6 138 67.4
Nn3g17003 Nelumbo nucifera HOM05D000104 ORTHO05D004363 3.4e-43 179.1 138 65.2
Cfa017683 Carpinus fangiana HOM05D000104 ORTHO05D004363 5.8e-43 178.3 138 64.5
Prupe.6G000100 Prunus persica HOM05D000104 ORTHO05D004363 5.8e-43 178.3 138 65.2
Eucgr.D01125 Eucalyptus grandis HOM05D000104 ORTHO05D004363 7.6e-43 177.9 138 65.9
Aqoxy7G00075 Aquilegia oxysepala HOM05D000104 ORTHO05D004363 9.9e-43 177.6 138 65.9
RcHm_v2.0_Chr5g0084181 Rosa chinensis HOM05D000104 ORTHO05D004363 1.7e-42 176.8 138 64.5
vmacro00212 Vaccinium macrocarpon HOM05D000104 ORTHO05D004363 1.7e-42 176.8 140 62.9
Potri.013G068400 Populus trichocarpa HOM05D000104 ORTHO05D004363 2.9e-42 176.0 138 65.9
Sabra13G0059700 Salix brachista HOM05D000104 ORTHO05D004363 6.4e-42 174.9 138 65.9
Haze_20464 Corylus avellana HOM05D000104 ORTHO05D004363 8.4e-42 174.5 138 63.8
CsaV3_3G021060 Cucumis sativus L. HOM05D000104 ORTHO05D004363 1.4e-41 173.7 138 61.6
CsaV3_4G017750 Cucumis sativus L. HOM05D000104 ORTHO05D004363 1.4e-41 173.7 138 61.6
MELO3C020235.2 Cucumis melo HOM05D000104 ORTHO05D004363 2.4e-41 172.9 138 61.6
ClCG05G011380 Citrullus lanatus HOM05D000104 ORTHO05D004363 3.2e-41 172.6 138 62.3
Lsat_1_v5_gn_5_59321 Lactuca sativa HOM05D000104 ORTHO05D004363 7.1e-41 171.4 140 67.9
unitig_92.g28135 Utricularia gibba HOM05D000104 ORTHO05D004363 7.1e-41 171.4 130 65.4
PGR083G0814 Punica granatum HOM05D000104 ORTHO05D004363 9.3e-41 171.0 138 63.8
FvH4_3g46101 Fragaria vesca HOM05D000104 ORTHO05D004363 2.1e-40 169.9 138 61.6
Thecc.05G236400 Theobroma cacao HOM05D000104 ORTHO05D004363 3.5e-40 169.1 138 62.3
TWI32G0549 Tripterygium wilfordii HOM05D000104 ORTHO05D004363 1.0e-39 167.5 138 64.5
Duzib177G0255 Durio zibethinus HOM05D000104 ORTHO05D004363 1.3e-39 167.2 138 64.5
FAN21G1945 Fragaria x ananassa HOM05D000104 ORTHO05D004363 1.7e-39 166.8 138 60.1
Sc05g0007890 Simmondsia chinensis HOM05D000104 ORTHO05D004363 1.7e-39 166.8 138 58.7
DCAR_002184 Daucus carota HOM05D007440 ORTHO05D004363 3.0e-39 166.0 138 62.3
CANSAT35G1590 Cannabis sativa HOM05D000104 ORTHO05D004363 3.9e-39 165.6 138 60.9
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 6.6e-39 164.9 138 59.4
Gohir.A13G159800 Gossypium hirsutum HOM05D000104 ORTHO05D004363 6.6e-39 164.9 138 63.0
Manes.08G155800 Manihot esculenta HOM05D000104 ORTHO05D004363 8.7e-39 164.5 138 61.6
FAN11G0644 Fragaria x ananassa HOM05D000104 ORTHO05D004363 1.5e-38 163.7 138 60.9
Ah.14g089210 Amaranthus hybridus HOM05D000104 ORTHO05D004363 1.9e-38 163.3 138 60.9
Gorai.013G197700 Gossypium raimondii HOM05D000104 ORTHO05D004363 2.5e-38 162.9 138 62.3
Gohir.D13G165000 Gossypium hirsutum HOM05D000104 ORTHO05D004363 3.3e-38 162.5 138 62.3
MD11G1000100 Malus domestica HOM05D000104 ORTHO05D004363 3.3e-38 162.5 135 62.2
Hund23685 Selenicereus undatus HOM05D000104 ORTHO05D004363 5.6e-38 161.8 138 59.4
HanXRQChr03g0082351 Helianthus annuus HOM05D000104 ORTHO05D004363 7.3e-38 161.4 139 66.2
MD03G1000900 Malus domestica HOM05D000104 ORTHO05D004363 7.3e-38 161.4 135 63.0
Psat7g148080 Pisum sativum HOM05D000104 ORTHO05D004363 9.6e-38 161.0 138 64.5
AUR62016963 Chenopodium quinoa HOM05D000104 ORTHO05D004363 1.3e-37 160.6 138 58.0
Glyma.12G002300 Glycine max HOM05D000104 ORTHO05D004363 1.3e-37 160.6 138 62.3
Lj3g0018732 Lotus japonicus HOM05D000104 ORTHO05D004363 1.6e-37 160.2 138 62.3
AUR62014777 Chenopodium quinoa HOM05D000104 ORTHO05D004363 2.1e-37 159.8 138 57.2
Duzib128G0660 Durio zibethinus HOM05D000104 ORTHO05D004363 3.6e-37 159.1 138 59.4
arahy.Tifrunner.gnm1.ann1.64GWQS Arachis hypogaea HOM05D000104 ORTHO05D004363 8.1e-37 157.9 138 60.1
CiPaw.09G169600 Carya illinoinensis HOM05D000104 ORTHO05D004363 8.1e-37 157.9 138 61.6
Ciclev10030472m.g Citrus clementina HOM05D000104 ORTHO05D004363 8.1e-37 157.9 138 62.3
ATR0665G650 Amborella trichopoda HOM05D000104 ORTHO05D004363 1.4e-36 157.1 138 58.0
Lalb_Chr01g0000141 Lupinus albus HOM05D000104 ORTHO05D004363 2.4e-36 156.4 138 60.1
Glyma.09G234400 Glycine max HOM05D000104 ORTHO05D004363 3.1e-36 156.0 138 61.6
THA.LOC104819143 Tarenaya hassleriana HOM05D000104 ORTHO05D004363 3.1e-36 156.0 138 59.4
TPR.G31923 Trifolium pratense HOM05D000104 ORTHO05D004363 4.0e-36 155.6 138 62.3
VMungo1127G2256 Vigna mungo HOM05D000104 ORTHO05D004363 9.0e-36 154.5 138 61.6
Carub.0005s2087 Capsella rubella HOM05D000104 ORTHO05D004363 3.4e-35 152.5 138 59.4
Ca_19676_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004363 3.4e-35 152.5 138 61.6
Medtr4g035100 Medicago truncatula HOM05D000104 ORTHO05D004363 4.4e-35 152.1 138 60.9
CDE06G1340 Ceratophyllum demersum HOM05D000104 ORTHO05D004363 7.6e-35 151.4 138 58.0
A09p47280 Brassica napus HOM05D000104 ORTHO05D004363 3.8e-34 149.1 138 58.7
BraA09t40189Z Brassica rapa HOM05D000104 ORTHO05D004363 3.8e-34 149.1 138 58.7
Cpa.g.sc73.36 Carica papaya HOM05D000104 ORTHO05D004363 3.8e-34 149.1 103 68.9
Phvul.011G002900 Phaseolus vulgaris HOM05D000104 ORTHO05D004363 3.8e-34 149.1 138 60.9
BolC8t50557H Brassica oleracea HOM05D000104 ORTHO05D004363 4.9e-34 148.7 138 58.7
C08p29510 Brassica napus HOM05D000104 ORTHO05D004363 6.4e-34 148.3 138 58.7
ECA240G3782 Erigeron canadensis HOM05D000104 ORTHO05D004363 6.4e-34 148.3 138 62.3
AT3G54280 Arabidopsis thaliana HOM05D000104 ORTHO05D004363 1.9e-33 146.7 138 57.2
Thhalv10010052m.g Eutrema salsugineum HOM05D000104 ORTHO05D004363 1.9e-33 146.7 138 58.0
COL.COLO4_33474 Corchorus olitorius HOM05D000104 ORTHO05D004363 2.4e-33 146.4 138 58.0
Sp5g08110 Schrenkiella parvula HOM05D000104 ORTHO05D004363 7.1e-33 144.8 138 55.1
AL5G35320 Arabidopsis lyrata HOM05D000104 ORTHO05D004363 9.3e-33 144.4 138 58.0
PSO832G0838 Papaver somniferum HOM05D000104 ORTHO05D004363 9.3e-33 144.4 137 59.9
Zm00001eb297280 Zea mays HOM05D000104 ORTHO05D004363 9.3e-33 144.4 141 54.6
Aa31sc392G40 Aethionema arabicum HOM05D000104 ORTHO05D004363 2.1e-32 143.3 138 56.5
HPP92_015726 Vanilla planifolia HOM05D000104 ORTHO05D004363 2.7e-32 142.9 140 54.3
CARHR164210 Cardamine hirsuta HOM05D000104 ORTHO05D004363 4.6e-32 142.1 138 56.5
Os02g0161300 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004363 4.3e-30 135.6 106 66.0
SEGI_24237 Sequoiadendron giganteum HOM05D000104 ORTHO05D004363 3.2e-25 119.4 140 48.6
Pp3c3_11220 Physcomitrium patens HOM05D000104 ORTHO05D004363 5.3e-20 102.1 138 44.9
SMO223G0022 Selaginella moellendorffii HOM05D000104 ORTHO05D004363 6.9e-20 101.7 106 50.9
Mapoly0038s0059 Marchantia polymorpha HOM05D000104 ORTHO05D004363 3.4e-19 99.4 105 52.4
AagrBONN_evm.TU.Sc2ySwM_228.4035 Anthoceros agrestis HOM05D000104 ORTHO05D004363 7.6e-19 98.2 141 39.7
AagrBONN_evm.TU.Sc2ySwM_228.1549 Anthoceros agrestis HOM05D000104 ORTHO05D004363 2.2e-18 96.7 138 39.9
Nitab4.5_0007853g0040 Nicotiana tabacum HOM05D022199 ORTHO05D286079 7.1e-17 91.7 48 79.2
ATR0559G230 Amborella trichopoda HOM05D000104 ORTHO05D004363 6.7e-15 85.1 77 57.1
CBR_g57043 Chara braunii HOM05D000104 ORTHO05D004363 1.4e-12 77.4 123 34.1
Nitab4.5_0025104g0010 Nicotiana tabacum HOM05D022199 ORTHO05D285447 1.5e-06 57.4 37 67.6


User provided reference genes

Program Settings