Gene: AT3G54280

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G54280
  • Transcript Identifier AT3G54280.1
  • Gene Type Coding gene
  • Location Chr3 : 20092361-20103807 : positive

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G54280.1
  • symbol RGD3
  • Alias ATBTAF1,BTAF1,CHA16,CHR16
  • uniprot B5BT18

Descriptions

  • Description ROOT GROWTH DEFECTIVE 3
  • Computational description ROOT GROWTH DEFECTIVE 3 (RGD3); FUNCTIONS IN: binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), DEAD-like helicase, N-terminal (InterPro:IPR014001), Armadillo-type fold (InterPro:IPR016024), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1); Has 18805 Blast hits to 15736 proteins in 1976 species: Archae - 119; Bacteria - 5461; Metazoa - 3891; Fungi - 4072; Plants - 1633; Viruses - 163; Other Eukaryotes - 3466 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1902185
IMP
Gene Ontologypositive regulation of shoot apical meristem development1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0017025
IEA
Gene OntologyTBP-class protein binding
GO:0017025
IEA
InterProTBP-class protein binding
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0003677
IBA
GOA DatabaseDNA binding
GO:0003677
IEA
Gene OntologyDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0008094
IBA
GOA DatabaseATPase, acting on DNA
GO:0004386
IEA
GOA Databasehelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0140658
IEA
Gene OntologyATPase-dependent chromatin remodeler activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR016024 Armadillo-type fold
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR044078 Mot1, ATP-binding domain
IPR038718 SNF2-like, N-terminal domain superfamily
IPR000330 SNF2, N-terminal
IPR044972 TATA-binding protein-associated factor Mot1
IPR011989 Armadillo-like helical
IPR022707 Mot1, central domain
Mapman id Description
12.4.8.2.2 Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.SSO1653-like group.chromatin remodeling factor (Mot1)
15.3.3.6.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TATA box-binding protein (TBP) regulation.TBP-associated factor (MOT1)