Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.3e-227 792.7 414 100.0
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.6e-223 778.5 420 97.4
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 4.6e-220 767.7 413 96.1
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 1.1e-218 763.1 411 95.6
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 3.3e-218 761.5 413 95.2
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 1.6e-217 759.2 413 94.9
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 7.1e-213 743.8 420 92.6
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 7.9e-196 687.2 413 85.2
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 4.3e-194 681.4 413 84.0
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 3.7e-193 678.3 414 83.1
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 1.4e-192 676.4 413 83.3
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 4.0e-192 674.9 411 84.2
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 5.8e-191 671.0 413 84.5
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 5.8e-191 671.0 414 81.6
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.0e-190 670.2 414 81.9
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 1.7e-190 669.5 414 82.1
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 2.2e-190 669.1 413 82.3
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 1.9e-189 666.0 414 80.9
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 2.5e-189 665.6 414 81.2
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.5e-189 665.6 412 82.0
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 3.2e-189 665.2 414 81.9
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 3.2e-189 665.2 414 81.6
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 5.5e-189 664.5 410 82.0
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 7.1e-189 664.1 409 82.4
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 1.6e-188 662.9 445 77.1
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 2.1e-188 662.5 414 80.9
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 3.5e-188 661.8 414 82.1
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 3.5e-188 661.8 414 81.2
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 6.0e-188 661.0 414 80.4
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.3e-187 659.8 416 81.2
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 6.7e-187 657.5 414 80.4
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 8.7e-187 657.1 414 79.5
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.5e-186 656.4 409 81.9
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.3e-185 653.3 414 80.0
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 1.6e-185 652.9 414 80.2
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 1.6e-185 652.9 413 80.1
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 3.7e-185 651.7 414 79.0
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 6.3e-185 651.0 414 79.2
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 6.3e-185 651.0 414 79.2
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 8.2e-185 650.6 411 80.5
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 1.1e-184 650.2 411 79.8
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 3.1e-184 648.7 414 79.0
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 6.9e-184 647.5 414 79.2
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 6.9e-184 647.5 414 79.0
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 1.2e-183 646.7 413 79.4
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.2e-183 646.7 414 79.0
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 1.5e-183 646.4 414 79.0
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 4.5e-183 644.8 414 78.0
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 5.8e-183 644.4 412 77.9
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 2.2e-182 642.5 416 78.6
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 3.8e-182 641.7 414 78.3
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 5.0e-182 641.3 414 78.0
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 8.4e-182 640.6 409 79.2
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 1.4e-181 639.8 414 78.3
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 4.2e-181 638.3 415 78.6
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 4.2e-181 638.3 414 79.2
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.6e-180 636.3 414 77.3
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 2.1e-180 636.0 414 77.1
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 2.7e-180 635.6 429 76.7
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 4.6e-180 634.8 414 78.0
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 6.1e-180 634.4 414 77.1
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.3e-179 633.3 414 77.5
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.3e-179 633.3 414 77.1
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 1.8e-179 632.9 414 77.5
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 1.8e-179 632.9 414 77.8
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 1.8e-179 632.9 414 77.5
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 1.8e-179 632.9 414 78.3
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.8e-179 632.9 414 77.5
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 6.7e-179 630.9 414 77.5
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 1.1e-178 630.2 414 77.3
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-178 629.8 414 77.1
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-178 629.4 414 77.5
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 1.6e-177 626.3 414 77.1
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 1.2e-175 620.2 415 76.6
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 3.4e-175 618.6 426 75.1
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 3.4e-175 618.6 426 75.1
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 5.9e-175 617.8 426 74.9
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 7.7e-175 617.5 414 75.1
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 2.9e-174 615.5 414 75.4
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 3.8e-174 615.1 409 77.8
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 5.0e-174 614.8 411 77.1
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.0e-171 607.1 414 75.6
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.1e-170 603.6 415 73.7
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.7e-169 599.7 438 72.1
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 4.8e-169 598.2 413 70.7
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 2.4e-168 595.9 414 73.7
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 5.9e-167 591.3 371 80.9
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 7.7e-167 590.9 415 72.0
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 7.7e-167 590.9 415 71.8
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.7e-166 589.7 375 79.7
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 4.2e-165 585.1 406 74.6
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 1.1e-162 577.0 416 72.4
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.0e-158 563.9 410 69.0
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 4.7e-156 555.1 410 70.7
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 6.1e-156 554.7 412 71.4
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 1.0e-155 553.9 371 78.2
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 6.7e-155 551.2 414 69.6
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 5.7e-154 548.1 409 68.0
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 3.7e-153 545.4 323 85.8
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 1.3e-145 520.4 418 66.3
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 4.1e-144 515.4 400 64.8
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 2.2e-142 509.6 485 59.8
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 3.8e-142 508.8 405 61.0
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.5e-141 506.9 411 66.9
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 7.5e-138 494.6 412 60.4
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 4.7e-132 475.3 296 80.4
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 1.0e-131 474.2 303 78.5
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 7.5e-130 468.0 281 83.6
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.9e-129 465.3 281 83.3
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.8e-124 449.5 257 88.3
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 5.8e-114 415.2 314 68.5
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 4.6e-111 405.6 256 78.1
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 5.1e-110 402.1 285 70.5
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 4.6e-103 379.0 313 64.5
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 2.0e-98 363.6 284 67.3
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 1.3e-94 350.9 301 65.1
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 1.3e-94 350.9 336 52.4
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.6e-84 317.4 173 94.8
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 8.1e-84 315.1 200 82.5
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.2e-82 311.2 191 83.2
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.7e-73 280.8 238 61.8
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 3.2e-72 276.6 185 76.8
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.8e-68 262.7 199 66.8
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.8e-60 236.1 204 62.7
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 6.3e-60 235.7 398 35.9
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 5.5e-56 222.6 318 37.4
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 2.7e-55 220.3 220 55.5
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.8e-54 217.6 402 33.3
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.0e-54 216.9 140 78.6
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 8.2e-52 208.8 121 83.5
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.4e-48 198.0 126 77.8
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 2.4e-43 180.6 102 86.3
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.1e-43 179.9 198 55.1
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.7e-39 166.4 161 58.4
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-37 161.4 177 53.7
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.8e-35 154.5 83 89.2
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.8e-33 146.7 107 65.4
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 1.1e-32 145.2 414 30.2
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 5.5e-32 142.9 114 62.3
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 6.8e-30 136.0 80 80.0
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.1e-24 118.6 115 60.0
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 1.4e-22 111.7 153 47.1
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.5e-16 91.7 51 86.3
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 4.3e-16 90.1 99 54.5
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 4.0e-14 83.6 127 46.5
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 7.5e-13 79.3 143 41.3
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 6.4e-12 76.3 54 77.8
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.1e-11 75.5 55 70.9
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.1e-11 73.6 50 72.0
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 5.4e-11 73.2 146 39.7
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 4.6e-10 70.1 62 62.9
Solyc12g070150.1 Solanum lycopersicum HOM05D004528 ORTHO05D005815 5.9e-10 69.7 43 83.7
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 6.6e-09 66.2 38 84.2
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.0e-07 59.3 72 45.8


User provided reference genes

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