Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010874g0010 Nicotiana tabacum HOM05D003878 ORTHO05D003857 2.9e-61 238.4 123 100.0
CAN.G587.10 Capsicum annuum HOM05D000541 ORTHO05D000137 1.2e-43 179.9 112 81.2
Nitab4.5_0003021g0100 Nicotiana tabacum HOM05D003878 ORTHO05D003857 3.1e-31 138.7 74 91.9
Dinv10653 Davidia involucrata HOM05D003878 ORTHO05D003857 7.9e-19 97.4 113 45.1
MBI05_g41786_MAGBIO Magnolia biondii HOM05D003878 ORTHO05D003857 3.9e-18 95.1 93 55.9
Manes.14G081500 Manihot esculenta HOM05D003878 ORTHO05D003857 5.1e-18 94.7 86 57.0
ATR0680G414 Amborella trichopoda HOM05D003878 ORTHO05D003857 1.5e-17 93.2 86 57.0
Hma1.2p1_0322F.1_g125070 Hydrangea macrophylla HOM05D003878 ORTHO05D003857 1.9e-17 92.8 112 46.4
TPR.G11840 Trifolium pratense HOM05D003878 ORTHO05D003857 1.9e-17 92.8 109 45.9
Nn2g10380 Nelumbo nucifera HOM05D003878 ORTHO05D003857 3.3e-17 92.0 107 46.7
COL.COLO4_36941 Corchorus olitorius HOM05D003878 ORTHO05D003857 2.2e-16 89.4 107 45.8
ClCG04G012090 Citrullus lanatus HOM05D003878 ORTHO05D003857 2.8e-16 89.0 99 48.5
MELO3C001999.2 Cucumis melo HOM05D003878 ORTHO05D003857 2.8e-16 89.0 99 48.5
CsaV3_1G005680 Cucumis sativus L. HOM05D003878 ORTHO05D003857 2.8e-16 89.0 99 48.5
Duzib068G0503 Durio zibethinus HOM05D003878 ORTHO05D003857 2.8e-16 89.0 107 45.8
CiPaw.11G047100 Carya illinoinensis HOM05D003878 ORTHO05D003857 3.7e-16 88.6 85 55.3
Lj4g0002884 Lotus japonicus HOM05D003878 ORTHO05D003857 3.7e-16 88.6 98 48.0
Sed0015977 Sechium edule HOM05D003878 ORTHO05D003857 3.7e-16 88.6 99 48.5
Cpa.g.sc13.294 Carica papaya HOM05D003878 ORTHO05D003857 6.3e-16 87.8 97 47.4
Gohir.A03G067700 Gossypium hirsutum HOM05D003878 ORTHO05D003857 6.3e-16 87.8 88 51.1
Gohir.D03G094200 Gossypium hirsutum HOM05D003878 ORTHO05D003857 6.3e-16 87.8 88 51.1
Gorai.003G098300 Gossypium raimondii HOM05D003878 ORTHO05D003857 6.3e-16 87.8 88 51.1
Aqoxy3G03485 Aquilegia oxysepala HOM05D003878 ORTHO05D003857 1.1e-15 87.0 89 50.6
CSS0032055 Camellia sinensis var. sinensis HOM05D003878 ORTHO05D003857 1.1e-15 87.0 89 50.6
CARHR275140 Cardamine hirsuta HOM05D003878 ORTHO05D003857 1.1e-15 87.0 101 48.5
Medtr4g108880 Medicago truncatula HOM05D003878 ORTHO05D003857 1.1e-15 87.0 112 44.6
Solyc06g069690.4 Solanum lycopersicum HOM05D003878 ORTHO05D003857 1.1e-15 87.0 85 54.1
TWI60G1095 Tripterygium wilfordii HOM05D003878 ORTHO05D003857 1.1e-15 87.0 110 46.4
Lalb_Chr07g0178171 Lupinus albus HOM05D003878 ORTHO05D003857 1.4e-15 86.7 100 50.0
PSO478G1572 Papaver somniferum HOM05D003878 ORTHO05D003857 1.4e-15 86.7 95 48.4
Sopen06g026990 Solanum pennellii HOM05D003878 ORTHO05D003857 1.4e-15 86.7 85 54.1
THA.LOC104801462 Tarenaya hassleriana HOM05D003878 ORTHO05D003857 1.4e-15 86.7 85 51.8
Aa31LG11G2040 Aethionema arabicum HOM05D003878 ORTHO05D003857 1.8e-15 86.3 85 52.9
MSTRG.9618 Avicennia marina HOM05D003878 ORTHO05D003857 1.8e-15 86.3 109 48.6
Cc04_g15190 Coffea canephora HOM05D003878 ORTHO05D003857 1.8e-15 86.3 115 40.9
Manes.06G089800 Manihot esculenta HOM05D003878 ORTHO05D003857 1.8e-15 86.3 86 53.5
Thhalv10003924m.g Eutrema salsugineum HOM05D003878 ORTHO05D003857 2.4e-15 85.9 101 47.5
Potri.015G061900 Populus trichocarpa HOM05D003878 ORTHO05D003857 2.4e-15 85.9 85 52.9
Atru.chr9.336 Acer truncatum HOM05D003878 ORTHO05D003857 3.1e-15 85.5 85 52.9
AL8G38050 Arabidopsis lyrata HOM05D003878 ORTHO05D003857 3.1e-15 85.5 101 47.5
Carub.0008s2205 Capsella rubella HOM05D003878 ORTHO05D003857 3.1e-15 85.5 101 47.5
CAN.G479.63 Capsicum annuum HOM05D003878 ORTHO05D003857 3.1e-15 85.5 86 53.5
Cfa018911 Carpinus fangiana HOM05D003878 ORTHO05D003857 3.1e-15 85.5 85 52.9
CDE02G0803 Ceratophyllum demersum HOM05D003878 ORTHO05D003857 3.1e-15 85.5 92 51.1
Haze_07295 Corylus avellana HOM05D001764 ORTHO05D003857 3.1e-15 85.5 85 52.9
PGR062G0001 Punica granatum HOM05D003878 ORTHO05D003857 3.1e-15 85.5 89 51.7
PGR083G0168 Punica granatum HOM05D003878 ORTHO05D003857 3.1e-15 85.5 89 51.7
Sp2g24590 Schrenkiella parvula HOM05D003878 ORTHO05D003857 3.1e-15 85.5 101 47.5
Psat4g049800 Pisum sativum HOM05D003878 ORTHO05D003857 4.1e-15 85.1 98 45.9
Sabra15G0086900 Salix brachista HOM05D003878 ORTHO05D003857 4.1e-15 85.1 85 52.9
Hund09823 Selenicereus undatus HOM05D003878 ORTHO05D003857 4.1e-15 85.1 90 53.3
PGSC0003DMG400033048 Solanum tuberosum HOM05D003878 ORTHO05D003857 4.1e-15 85.1 85 52.9
Thecc.03G093700 Theobroma cacao HOM05D003878 ORTHO05D003857 4.1e-15 85.1 85 52.9
TAR629G1644 Trochodendron aralioides HOM05D003878 ORTHO05D003857 4.1e-15 85.1 104 46.2
AT5G61380 Arabidopsis thaliana HOM05D003878 ORTHO05D003857 5.3e-15 84.7 101 47.5
Ca_14691_v3 Cicer arietinum L. HOM05D003878 ORTHO05D003857 5.3e-15 84.7 95 48.4
Ca_30947_v3 Cicer arietinum L. HOM05D003878 ORTHO05D003857 5.3e-15 84.7 95 48.4
Dinv10655 Davidia involucrata HOM05D003878 ORTHO05D003857 5.3e-15 84.7 89 50.6
ECA247G3052 Erigeron canadensis HOM05D003878 ORTHO05D003857 5.3e-15 84.7 111 44.1
TAR369G0188 Trochodendron aralioides HOM05D003878 ORTHO05D003857 5.3e-15 84.7 89 49.4
BraA09t36379Z Brassica rapa HOM05D003878 ORTHO05D003857 6.9e-15 84.3 101 46.5
Glyma.17G102200 Glycine max HOM05D003878 ORTHO05D003857 6.9e-15 84.3 101 45.5
TWI15G0625 Tripterygium wilfordii HOM05D003878 ORTHO05D003857 6.9e-15 84.3 110 45.5
CANSAT80G1069 Cannabis sativa HOM05D003878 ORTHO05D003857 9.1e-15 84.0 85 51.8
Medtr3g037390 Medicago truncatula HOM05D003878 ORTHO05D003857 9.1e-15 84.0 95 46.3
PSO017G0340 Papaver somniferum HOM05D003878 ORTHO05D003857 9.1e-15 84.0 94 47.9
Psat5g199360 Pisum sativum HOM05D003878 ORTHO05D003857 9.1e-15 84.0 90 48.9
BcaC04g23454 Brassica carinata HOM05D003878 ORTHO05D003857 1.2e-14 83.6 101 46.5
Lalb_Chr08g0235491 Lupinus albus HOM05D003878 ORTHO05D003857 1.2e-14 83.6 96 50.0
Oeu047002.2 Olea europaea HOM05D003878 ORTHO05D003857 1.2e-14 83.6 85 51.8
FAN18G2514 Fragaria x ananassa HOM05D003878 ORTHO05D003857 1.5e-14 83.2 90 50.0
Prupe.5G197900 Prunus persica HOM05D003878 ORTHO05D003857 1.5e-14 83.2 85 52.9
SalBow7G4352 Salvia bowleyana HOM05D003878 ORTHO05D003857 1.5e-14 83.2 87 50.6
Solyc03g115770.3 Solanum lycopersicum HOM05D003878 ORTHO05D003857 1.5e-14 83.2 85 54.1
Sopen03g034750 Solanum pennellii HOM05D003878 ORTHO05D003857 1.5e-14 83.2 85 54.1
PGSC0003DMG400019518 Solanum tuberosum HOM05D003878 ORTHO05D003857 1.5e-14 83.2 85 54.1
TAR625G0726 Trochodendron aralioides HOM05D003878 ORTHO05D003857 1.5e-14 83.2 89 49.4
MSTRG.4440 Avicennia marina HOM05D003878 ORTHO05D003857 2.0e-14 82.8 85 50.6
Duzib205G1832 Durio zibethinus HOM05D003878 ORTHO05D003857 2.0e-14 82.8 89 51.7
FvH4_5g14580 Fragaria vesca HOM05D003878 ORTHO05D003857 2.0e-14 82.8 89 50.6
Glyma.04G166300 Glycine max HOM05D003878 ORTHO05D003857 2.0e-14 82.8 109 43.1
HanXRQChr02g0043181 Helianthus annuus HOM05D003878 ORTHO05D003857 2.0e-14 82.8 110 43.6
Lj9C466G6 Lonicera japonica HOM05D003878 ORTHO05D003857 2.0e-14 82.8 117 41.9
QL10p017674 Quercus lobata HOM05D003878 ORTHO05D003857 2.0e-14 82.8 85 51.8
Sed0008795 Sechium edule HOM05D003878 ORTHO05D003857 2.0e-14 82.8 85 49.4
SGA_v2.0_scaffold25G10935 Striga asiatica HOM05D001764 ORTHO05D001946 2.0e-14 82.8 88 50.0
TPR.G681 Trifolium pratense HOM05D003878 ORTHO05D003857 2.0e-14 82.8 98 44.9
Actinidia35011 Actinidia chinensis HOM05D003878 ORTHO05D003857 2.6e-14 82.4 89 50.6
Actinidia37611 Actinidia chinensis HOM05D003878 ORTHO05D003857 2.6e-14 82.4 85 51.8
BcaB04g19909 Brassica carinata HOM05D003878 ORTHO05D003857 2.6e-14 82.4 85 50.6
A03p46980 Brassica napus HOM05D003878 ORTHO05D003857 2.6e-14 82.4 101 46.5
C07p45020 Brassica napus HOM05D003878 ORTHO05D003857 2.6e-14 82.4 101 46.5
BolC7t45025H Brassica oleracea HOM05D003878 ORTHO05D003857 2.6e-14 82.4 101 46.5
BraA03t13822Z Brassica rapa HOM05D003878 ORTHO05D003857 2.6e-14 82.4 101 46.5
CDE09G1270 Ceratophyllum demersum HOM05D003878 ORTHO05D003857 2.6e-14 82.4 92 50.0
Cc04_g14990 Coffea canephora HOM05D003878 ORTHO05D003857 2.6e-14 82.4 85 51.8
C09p08170 Brassica napus HOM05D003878 ORTHO05D003857 3.4e-14 82.0 101 45.5
BolC9t53729H Brassica oleracea HOM05D003878 ORTHO05D003857 3.4e-14 82.0 101 45.5
MD06G1197300 Malus domestica HOM05D003878 ORTHO05D003857 3.4e-14 82.0 89 48.3
Oeu024449.1 Olea europaea HOM05D003878 ORTHO05D003857 3.4e-14 82.0 85 49.4
RcHm_v2.0_Chr7g0181991 Rosa chinensis HOM05D003878 ORTHO05D003857 3.4e-14 82.0 85 51.8
VMungo1215G0660 Vigna mungo HOM05D003878 ORTHO05D003857 3.4e-14 82.0 98 43.9
Ah.02g113730 Amaranthus hybridus HOM05D003878 ORTHO05D003857 4.5e-14 81.6 90 51.1
Ca_21808_v3 Cicer arietinum L. HOM05D003878 ORTHO05D003857 4.5e-14 81.6 112 43.8
Lsat_1_v5_gn_1_14320 Lactuca sativa HOM05D003878 ORTHO05D003857 4.5e-14 81.6 110 44.5
Nn5g26927 Nelumbo nucifera HOM05D003878 ORTHO05D003857 4.5e-14 81.6 99 46.5
unitig_0.g775 Utricularia gibba HOM05D003878 ORTHO05D003857 5.9e-14 81.3 89 47.2
Actinidia19020 Actinidia chinensis HOM05D003878 ORTHO05D003857 7.7e-14 80.9 100 47.0
arahy.Tifrunner.gnm1.ann1.2F1UPX Arachis hypogaea HOM05D003878 ORTHO05D003857 7.7e-14 80.9 85 50.6
arahy.Tifrunner.gnm1.ann1.D90B1M Arachis hypogaea HOM05D003878 ORTHO05D003857 7.7e-14 80.9 85 50.6
Migut.I00209 Erythranthe guttata HOM05D003878 ORTHO05D003857 7.7e-14 80.9 85 51.8
Oeu006383.1 Olea europaea HOM05D003878 ORTHO05D003857 7.7e-14 80.9 85 51.8
Prupe.5G198000 Prunus persica HOM05D003878 ORTHO05D003857 7.7e-14 80.9 89 48.3
QL10p017642 Quercus lobata HOM05D003878 ORTHO05D003857 7.7e-14 80.9 115 40.0
GSVIVG01007965001 Vitis vinifera HOM05D003878 ORTHO05D003857 7.7e-14 80.9 89 48.3
MD14G1204700 Malus domestica HOM05D003878 ORTHO05D003857 1.0e-13 80.5 89 48.3
AUR62021636 Chenopodium quinoa HOM05D003878 ORTHO05D003857 1.3e-13 80.1 92 46.7
FvH4_5g14560 Fragaria vesca HOM05D003878 ORTHO05D003857 1.7e-13 79.7 85 50.6
FAN13G2746 Fragaria x ananassa HOM05D003878 ORTHO05D003857 1.7e-13 79.7 85 50.6
FAN18G1413 Fragaria x ananassa HOM05D003878 ORTHO05D003857 1.7e-13 79.7 85 50.6
RcHm_v2.0_Chr7g0182001 Rosa chinensis HOM05D003878 ORTHO05D003857 1.7e-13 79.7 85 50.6
Dinv38743 Davidia involucrata HOM05D003878 ORTHO05D003857 2.2e-13 79.3 85 50.6
Glyma.06G196200 Glycine max HOM05D003878 ORTHO05D003857 2.2e-13 79.3 109 44.0
DCAR_016576 Daucus carota HOM05D003878 ORTHO05D003857 5.0e-13 78.2 109 40.4
FAN08G1337 Fragaria x ananassa HOM05D003878 ORTHO05D003857 5.0e-13 78.2 85 49.4
Lsat_1_v5_gn_5_21481 Lactuca sativa HOM05D003878 ORTHO05D003857 5.0e-13 78.2 88 48.9
VMungo1309G1477 Vigna mungo HOM05D003878 ORTHO05D003857 5.0e-13 78.2 110 43.6
Migut.D01765 Erythranthe guttata HOM05D003878 ORTHO05D003857 6.5e-13 77.8 109 44.0
Migut.D01764 Erythranthe guttata HOM05D003878 ORTHO05D003857 8.5e-13 77.4 85 45.9
TAR623G0526 Trochodendron aralioides HOM05D003878 ORTHO05D003857 1.4e-12 76.6 89 47.2
Ciclev10019534m.g Citrus clementina HOM05D003878 ORTHO05D003857 1.9e-12 76.3 85 48.2
Phvul.009G185500 Phaseolus vulgaris HOM05D003878 ORTHO05D003857 1.9e-12 76.3 110 43.6
vmacro16524 Vaccinium macrocarpon HOM05D003878 ORTHO05D003857 1.9e-12 76.3 85 48.2
GSVIVG01007970001 Vitis vinifera HOM05D003878 ORTHO05D003857 1.9e-12 76.3 112 42.0
Rhsim12G0154100 Rhododendron simsii HOM05D003878 ORTHO05D003857 2.5e-12 75.9 85 48.2
PSO063G5546 Papaver somniferum HOM05D003878 ORTHO05D003857 1.2e-11 73.6 89 46.1
PSO198G0128 Papaver somniferum HOM05D003878 ORTHO05D003857 1.2e-11 73.6 89 46.1
Lj5A108G51 Lonicera japonica HOM05D003878 ORTHO05D003857 2.1e-11 72.8 113 39.8
GSVIVG01007966001 Vitis vinifera HOM05D003878 ORTHO05D003857 4.7e-11 71.6 83 43.4
HanXRQChr08g0236661 Helianthus annuus HOM05D003878 ORTHO05D003857 1.4e-10 70.1 91 45.1
Zm00001eb247330 Zea mays HOM05D003878 ORTHO05D003857 3.9e-10 68.6 85 45.9
Nitab4.5_0005900g0090 Nicotiana tabacum HOM05D003878 ORTHO05D003857 5.1e-10 68.2 118 39.0
Nitab4.5_0001211g0280 Nicotiana tabacum HOM05D003878 ORTHO05D003857 6.7e-10 67.8 118 39.0
Os02g0618200 Oryza sativa ssp. japonica HOM05D003878 ORTHO05D003857 6.7e-10 67.8 85 44.7
FAN13G3320 Fragaria x ananassa HOM05D001764 ORTHO05D003857 8.8e-10 67.4 90 46.7
Ah.11g048230 Amaranthus hybridus HOM05D003878 ORTHO05D003857 7.4e-09 64.3 119 37.8
SMO358G0608 Selaginella moellendorffii HOM05D003878 ORTHO05D003857 7.4e-09 64.3 84 40.5
AUR62008459 Chenopodium quinoa HOM05D003878 ORTHO05D003857 9.7e-09 63.9 62 53.2
unitig_60.g25802 Utricularia gibba HOM05D003878 ORTHO05D003857 4.8e-08 61.6 65 49.2
CSS0027901 Camellia sinensis var. sinensis HOM05D003878 ORTHO05D003857 6.3e-08 61.2 67 49.3
EL10Ac5g11059 Beta vulgaris HOM05D003878 ORTHO05D003857 8.2e-08 60.8 136 34.6
unitig_52.g17704 Utricularia gibba HOM05D001073 ORTHO05D002392 2.0e-06 56.2 80 41.2
Mapoly0085s0081 Marchantia polymorpha HOM05D003878 ORTHO05D003857 4.5e-06 55.1 86 36.0
Sed0021704 Sechium edule HOM05D001073 ORTHO05D002392 5.9e-06 54.7 80 40.0
CARHR273730 Cardamine hirsuta HOM05D001073 ORTHO05D002886 7.7e-06 54.3 85 34.1
Sed0002942 Sechium edule HOM05D001073 ORTHO05D002392 7.7e-06 54.3 80 37.5


User provided reference genes

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