Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.6e-76 289.3 142 100.0
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.0e-38 162.2 184 56.0
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 5.7e-37 157.9 186 55.4
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 7.0e-35 151.0 187 52.9
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 7.7e-34 147.5 185 53.5
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 3.8e-33 145.2 185 53.0
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 7.2e-32 141.0 185 51.9
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 9.4e-32 140.6 169 51.5
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 2.7e-31 139.0 185 49.2
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 2.7e-31 139.0 185 49.2
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 2.7e-31 139.0 185 49.2
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 1.0e-30 137.1 143 55.9
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 1.4e-30 136.7 185 48.1
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 1.8e-30 136.3 191 50.3
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 8.8e-30 134.0 185 48.6
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 2.6e-29 132.5 185 47.6
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 2.6e-29 132.5 187 47.6
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 3.3e-29 132.1 185 48.1
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 3.3e-29 132.1 185 47.6
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 3.3e-29 132.1 185 47.6
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 4.4e-29 131.7 185 47.0
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 4.4e-29 131.7 187 47.6
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 4.4e-29 131.7 191 48.7
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 5.7e-29 131.3 186 48.9
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 5.7e-29 131.3 185 47.0
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 7.5e-29 131.0 185 48.1
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 7.5e-29 131.0 185 48.1
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 7.5e-29 131.0 185 48.1
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 7.5e-29 131.0 185 48.1
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 9.7e-29 130.6 187 47.6
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 1.3e-28 130.2 185 47.0
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 1.3e-28 130.2 185 46.5
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 1.7e-28 129.8 191 48.2
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 1.7e-28 129.8 185 47.6
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 2.2e-28 129.4 191 46.1
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 2.2e-28 129.4 185 47.0
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 2.2e-28 129.4 191 47.6
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 2.2e-28 129.4 185 47.6
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 2.2e-28 129.4 185 46.5
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 3.7e-28 128.6 185 47.6
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 3.7e-28 128.6 185 47.6
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 3.7e-28 128.6 185 47.0
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 3.7e-28 128.6 185 48.6
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 3.7e-28 128.6 185 47.0
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 4.8e-28 128.3 185 47.6
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 4.8e-28 128.3 185 47.0
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 4.8e-28 128.3 188 47.3
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 4.8e-28 128.3 188 47.3
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 4.8e-28 128.3 188 47.3
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 4.8e-28 128.3 185 45.4
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 6.3e-28 127.9 187 46.5
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 6.3e-28 127.9 185 46.5
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 6.3e-28 127.9 185 47.6
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 8.2e-28 127.5 77 83.1
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 1.4e-27 126.7 185 46.5
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 1.4e-27 126.7 185 45.9
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 1.4e-27 126.7 191 47.1
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 1.8e-27 126.3 185 48.1
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 2.4e-27 125.9 191 47.6
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 3.1e-27 125.6 182 46.7
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 3.1e-27 125.6 185 45.4
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 3.1e-27 125.6 185 45.4
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 4.1e-27 125.2 187 46.0
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 4.1e-27 125.2 185 47.0
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 4.1e-27 125.2 185 45.4
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 5.3e-27 124.8 185 45.9
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 5.3e-27 124.8 185 45.4
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 7.0e-27 124.4 187 43.9
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 7.0e-27 124.4 185 45.9
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 7.0e-27 124.4 185 43.2
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 7.0e-27 124.4 185 44.9
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 7.0e-27 124.4 204 41.7
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 9.1e-27 124.0 176 46.0
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 9.1e-27 124.0 185 44.9
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 9.1e-27 124.0 185 44.9
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 9.1e-27 124.0 188 45.2
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 1.2e-26 123.6 208 42.8
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 3.5e-26 122.1 188 45.7
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 7.7e-26 120.9 72 81.9
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 1.7e-25 119.8 185 44.3
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 2.2e-25 119.4 187 45.5
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 3.8e-25 118.6 185 45.9
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 5.0e-25 118.2 185 43.8
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 5.0e-25 118.2 187 44.4
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.5e-24 116.7 222 39.2
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 1.5e-24 116.7 187 43.9
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 1.9e-24 116.3 72 79.2
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 2.5e-24 115.9 244 36.9
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 3.2e-24 115.5 185 44.9
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 4.2e-24 115.2 212 38.2
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 5.5e-24 114.8 185 42.7
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 2.1e-23 112.8 77 74.0
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 2.7e-23 112.5 188 42.0
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 3.6e-23 112.1 77 71.4
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 4.7e-23 111.7 187 43.3
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 6.1e-23 111.3 72 75.0
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.0e-22 110.5 244 36.1
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 1.4e-22 110.2 185 43.8
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 2.3e-22 109.4 77 70.1
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 3.0e-22 109.0 185 41.6
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 6.8e-22 107.8 184 42.9
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 6.8e-22 107.8 190 39.5
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 2.0e-21 106.3 190 38.9
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 3.4e-21 105.5 200 37.5
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 9.8e-21 104.0 185 40.5
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 1.7e-20 103.2 184 38.6
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 4.1e-19 98.6 78 65.4
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 3.5e-18 95.5 73 64.4
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.3e-17 93.6 73 63.0
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 1.6e-15 86.7 86 52.3
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 7.8e-10 67.8 49 67.3
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 5.6e-08 61.6 132 37.9
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.3e-06 56.2 72 36.1
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 6.8e-06 54.7 40 65.0


User provided reference genes

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