Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.9e-151 539.3 299 100.0
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 3.6e-150 535.0 297 99.7
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 3.0e-144 515.4 300 94.0
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 6.6e-144 514.2 300 94.0
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 8.6e-144 513.8 300 93.3
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 8.6e-144 513.8 298 94.0
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 8.9e-141 503.8 298 91.3
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 1.7e-136 489.6 299 85.6
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 3.0e-136 488.8 302 87.4
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 1.2e-132 476.9 299 89.6
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 2.6e-132 475.7 301 87.0
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 3.4e-132 475.3 300 82.0
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 4.4e-132 474.9 298 84.2
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 4.9e-131 471.5 301 83.1
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 1.1e-130 470.3 306 80.4
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 9.2e-130 467.2 300 79.7
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 1.2e-129 466.8 301 87.7
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 1.2e-129 466.8 301 82.7
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.1e-129 466.1 305 85.2
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 3.5e-129 465.3 299 87.6
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 3.5e-129 465.3 304 81.2
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 4.6e-129 464.9 304 84.2
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 4.6e-129 464.9 306 82.0
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 4.6e-129 464.9 301 83.4
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 6.0e-129 464.5 304 81.6
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 6.0e-129 464.5 302 82.5
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 7.8e-129 464.2 304 80.9
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 1.3e-128 463.4 306 84.0
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.3e-128 463.4 304 81.2
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.3e-128 463.4 304 81.2
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 2.3e-128 462.6 299 79.6
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 3.0e-128 462.2 301 80.4
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 3.9e-128 461.8 299 84.6
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 5.1e-128 461.5 296 84.1
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 8.7e-128 460.7 300 85.7
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 1.5e-127 459.9 300 80.3
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 1.9e-127 459.5 299 81.9
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 2.5e-127 459.1 302 78.8
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 4.3e-127 458.4 304 80.3
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 4.3e-127 458.4 300 81.3
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 5.6e-127 458.0 304 80.3
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 7.3e-127 457.6 303 85.5
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 9.6e-127 457.2 304 81.6
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 1.2e-126 456.8 305 83.9
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 2.1e-126 456.1 302 80.1
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 2.8e-126 455.7 300 85.0
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 3.6e-126 455.3 302 82.8
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 4.7e-126 454.9 305 82.6
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 6.2e-126 454.5 303 80.9
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 1.1e-125 453.8 300 82.0
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.4e-125 453.4 302 82.1
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.4e-125 453.4 302 82.1
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 1.8e-125 453.0 304 79.9
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 1.8e-125 453.0 301 83.1
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 2.4e-125 452.6 304 77.6
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 3.1e-125 452.2 300 81.7
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 4.0e-125 451.8 299 80.6
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 4.0e-125 451.8 299 79.3
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.5e-124 449.9 302 82.1
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 2.0e-124 449.5 302 82.8
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 2.6e-124 449.1 299 78.9
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 3.4e-124 448.7 302 78.1
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 5.8e-124 448.0 300 78.3
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 9.9e-124 447.2 302 78.5
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 9.9e-124 447.2 301 82.7
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.7e-123 446.4 304 80.9
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 1.7e-123 446.4 300 78.0
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 2.2e-123 446.0 304 77.0
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 2.2e-123 446.0 304 81.9
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 3.8e-123 445.3 305 81.3
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 4.9e-123 444.9 293 80.5
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 8.4e-123 444.1 305 80.7
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.9e-122 443.0 304 78.0
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 5.4e-122 441.4 300 77.7
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 1.2e-121 440.3 306 77.5
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 1.2e-121 440.3 306 77.5
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 1.2e-121 440.3 306 77.5
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 1.2e-121 440.3 304 75.7
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 1.2e-121 440.3 303 76.9
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.7e-121 439.1 304 76.6
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 6.0e-121 438.0 303 76.6
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 6.0e-121 438.0 303 76.6
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 7.8e-121 437.6 302 76.5
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.0e-120 437.2 299 81.3
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 1.7e-120 436.4 301 81.4
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 1.7e-120 436.4 299 76.6
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 2.3e-120 436.0 299 79.9
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 2.3e-120 436.0 299 79.9
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 2.3e-120 436.0 299 79.9
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 3.0e-120 435.6 301 76.7
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 3.0e-120 435.6 304 75.7
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 5.1e-120 434.9 300 79.7
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 5.1e-120 434.9 304 75.3
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 6.6e-120 434.5 303 76.2
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 1.1e-119 433.7 300 79.0
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 4.3e-119 431.8 300 78.7
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 9.6e-119 430.6 283 80.9
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 6.2e-118 427.9 303 77.9
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 1.4e-117 426.8 303 78.2
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 1.8e-117 426.4 299 77.9
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 2.4e-117 426.0 303 73.9
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 5.3e-117 424.9 301 77.1
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 6.9e-117 424.5 303 77.9
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 9.0e-117 424.1 302 79.5
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 4.5e-116 421.8 302 79.5
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.7e-115 419.9 300 74.0
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.2e-115 419.5 296 80.4
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 1.9e-114 416.4 302 72.8
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 4.8e-110 401.7 312 73.4
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 1.8e-109 399.8 303 72.9
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 2.4e-106 389.4 300 68.7
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 2.3e-104 382.9 298 68.8
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.3e-102 377.1 280 75.7
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 1.2e-100 370.5 303 71.3
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.4e-98 363.6 299 63.9
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 1.5e-95 353.6 287 67.9
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 2.2e-94 349.7 195 87.7
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 3.1e-93 345.9 323 61.9
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 9.4e-90 334.3 301 58.1
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 8.8e-88 327.8 249 75.9
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 1.9e-82 310.1 295 61.4
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.8e-80 303.5 249 66.7
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.0e-80 302.8 300 54.7
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 6.7e-80 301.6 299 58.5
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 3.1e-77 292.7 299 59.2
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.0e-68 263.5 134 97.0
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 4.5e-68 262.3 298 51.3
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.2e-63 247.7 274 59.9
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 7.5e-63 245.0 195 73.3
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 7.2e-58 228.4 188 73.4
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 2.6e-55 219.9 204 66.7
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 1.1e-50 204.5 291 48.5
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 5.5e-50 202.2 303 44.9
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.7e-49 199.1 167 75.4
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 9.8e-47 191.4 227 55.9
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.4e-45 186.8 190 60.5
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 5.9e-44 182.2 190 60.5
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 4.3e-42 176.0 199 49.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 5.2e-40 169.1 111 78.4
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 2.4e-37 160.2 104 73.1
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 1.1e-32 144.8 172 48.8
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 7.5e-31 138.7 102 66.7
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 2.9e-30 136.7 262 46.2
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 5.2e-24 115.9 299 37.8
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.5e-23 114.4 299 37.8
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 8.3e-22 108.6 77 70.1
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 2.4e-21 107.1 61 78.7
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 4.1e-21 106.3 77 67.5
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 9.2e-21 105.1 152 50.7
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 1.1e-18 98.2 112 61.6
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 1.5e-18 97.8 59 76.3
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 1.6e-17 94.4 111 63.1
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 5.8e-15 85.9 94 61.7
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 2.7e-12 77.0 52 84.6
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 3.9e-11 73.2 93 57.0
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 7.3e-10 68.9 127 46.5
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 1.3e-06 58.2 78 46.2


User provided reference genes

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