Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 4.3e-295 1017.3 534 100.0
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.4e-290 1002.3 534 97.9
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 4.3e-287 990.7 534 97.6
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 3.4e-268 927.9 535 88.8
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 3.4e-244 848.2 481 89.6
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 5.9e-244 847.4 535 84.7
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 3.1e-221 771.9 533 73.5
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 3.8e-219 765.0 544 72.6
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 1.9e-218 762.7 531 78.0
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 2.0e-215 752.7 533 72.2
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 5.4e-213 744.6 537 70.9
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 4.2e-210 734.9 533 70.4
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 8.0e-209 730.7 529 73.9
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 3.0e-208 728.8 530 71.1
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 4.9e-206 721.5 532 70.9
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 4.0e-200 701.8 532 68.6
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 3.4e-199 698.7 537 69.6
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 1.4e-197 693.3 555 67.2
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 1.8e-197 693.0 536 71.3
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 2.4e-197 692.6 536 67.4
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 3.5e-196 688.7 533 69.8
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 3.5e-196 688.7 531 65.5
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 1.0e-195 687.2 529 68.1
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 1.7e-195 686.4 555 66.8
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 3.9e-195 685.3 529 68.1
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 3.3e-194 682.2 535 65.6
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 5.6e-194 681.4 529 65.2
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 1.6e-193 679.9 538 65.4
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 5.2e-192 674.9 537 65.9
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 7.5e-191 671.0 532 64.3
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 1.3e-190 670.2 537 65.5
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 1.3e-190 670.2 537 64.8
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 8.3e-190 667.5 529 66.9
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 1.1e-189 667.2 531 64.4
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 4.1e-189 665.2 539 64.0
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 2.1e-188 662.9 533 63.4
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 4.6e-188 661.8 533 61.9
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 6.0e-188 661.4 531 62.9
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 3.9e-187 658.7 530 65.7
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 8.1e-185 651.0 525 65.0
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 8.1e-185 651.0 525 65.0
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 3.1e-184 649.0 528 63.1
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 3.1e-184 649.0 528 63.1
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 6.8e-184 647.9 525 64.4
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 1.4e-181 640.2 556 63.8
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 4.6e-180 635.2 528 61.2
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 5.1e-179 631.7 532 63.3
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 9.5e-178 627.5 525 64.8
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 4.7e-177 625.2 499 68.9
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 2.4e-176 622.9 537 60.3
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 6.8e-176 621.3 533 61.7
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 2.0e-175 619.8 530 60.6
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 1.4e-173 613.6 536 63.8
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 2.4e-173 612.8 526 62.5
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 2.4e-173 612.8 536 61.6
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 2.4e-173 612.8 532 62.8
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 3.2e-173 612.5 532 62.8
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 4.1e-173 612.1 535 62.8
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 4.1e-173 612.1 532 62.8
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 5.4e-173 611.7 551 63.5
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 9.2e-173 610.9 532 62.8
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 2.1e-172 609.8 541 63.6
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 3.5e-172 609.0 538 62.3
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 1.7e-171 606.7 528 62.9
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 5.1e-171 605.1 534 62.4
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 5.1e-171 605.1 538 62.1
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 6.6e-171 604.7 537 58.1
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 1.5e-170 603.6 523 62.5
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 4.3e-170 602.1 552 62.1
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 5.6e-170 601.7 523 62.1
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 9.6e-170 600.9 527 61.9
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 2.8e-169 599.4 552 62.0
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 2.8e-169 599.4 552 62.0
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 3.1e-168 595.9 533 60.8
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 3.1e-168 595.9 533 60.8
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 6.9e-168 594.7 540 56.7
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 3.4e-167 592.4 532 57.0
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 2.2e-166 589.7 533 57.8
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 3.8e-166 589.0 532 60.0
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 1.1e-165 587.4 536 59.0
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.9e-165 586.6 552 61.6
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 9.3e-165 584.3 535 56.6
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 2.5e-162 576.2 531 55.9
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 4.3e-162 575.5 528 62.9
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 1.4e-160 570.5 531 55.7
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 5.3e-160 568.5 530 55.8
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 1.2e-159 567.4 531 55.6
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 1.5e-159 567.0 531 55.7
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 5.8e-159 565.1 533 59.5
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 5.4e-157 558.5 531 58.6
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 2.7e-156 556.2 531 58.6
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 2.4e-152 543.1 524 57.6
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 6.9e-152 541.6 540 56.5
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 4.2e-149 532.3 533 54.2
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 2.7e-148 529.6 526 56.5
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 3.5e-148 529.3 537 55.9
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 2.3e-147 526.6 532 56.0
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 1.2e-143 514.2 532 53.8
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 4.8e-137 492.3 535 55.3
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 1.0e-134 484.6 533 49.5
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 3.8e-134 482.6 460 58.0
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 1.9e-133 480.3 537 49.2
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 3.6e-132 476.1 509 53.6
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 5.1e-131 472.2 525 50.9
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 1.2e-127 461.1 528 48.7
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 2.9e-126 456.4 540 48.0
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 1.1e-125 454.5 326 68.4
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 7.0e-96 355.5 392 53.3
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 1.0e-94 351.7 525 42.7
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 4.4e-90 336.3 335 49.9
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 4.1e-88 329.7 533 39.0
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 2.7e-87 327.0 399 47.1
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 1.6e-84 317.8 532 39.7
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 3.1e-83 313.5 504 38.9
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 5.4e-80 302.8 527 41.2
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 1.2e-79 301.6 276 54.0
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 5.0e-78 296.2 345 50.1
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 5.6e-69 266.2 527 34.0
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 5.8e-66 256.1 407 36.9
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 1.4e-59 235.0 181 65.2
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.4e-56 224.9 345 41.2
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 2.2e-49 201.1 239 49.4
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 3.5e-47 193.7 101 92.1
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 3.9e-46 190.3 224 50.0
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 1.8e-43 181.4 499 31.9
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 3.3e-29 134.0 129 56.6
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 4.8e-28 130.2 119 58.8
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 6.9e-27 126.3 102 62.7
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 9.0e-27 125.9 109 55.0
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 1.0e-22 112.5 157 45.2
CAN.G111.2 Capsicum annuum HOM05D000002 ORTHO05D000001 5.7e-21 106.7 68 76.5
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 1.1e-19 102.4 75 73.3
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 1.4e-19 102.1 157 42.7
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 1.4e-16 92.0 61 68.9
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 1.2e-15 89.0 97 53.6
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 1.6e-15 88.6 130 47.7
PGSC0003DMG400003474 Solanum tuberosum HOM05D005544 ORTHO05D003203 2.7e-15 87.8 54 70.4
CBR_g31026 Chara braunii HOM05D005544 ORTHO05D007303 2.5e-13 81.3 277 28.2
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 5.7e-13 80.1 101 49.5
TWI63G0393 Tripterygium wilfordii HOM05D005151 ORTHO05D006322 1.5e-10 72.0 172 29.7
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 1.3e-09 68.9 70 48.6
Duzib192G0624 Durio zibethinus HOM05D000836 ORTHO05D000709 7.2e-08 63.2 203 27.6
Medtr2g014020 Medicago truncatula HOM05D000836 ORTHO05D000709 7.2e-08 63.2 186 28.0
Glyma.15G075500 Glycine max HOM05D000836 ORTHO05D000709 1.2e-07 62.4 185 28.1
CBR_g51968 Chara braunii HOM05D000684 ORTHO05D000688 7.9e-07 59.7 199 25.1
Hma1.2p1_0736F.1_g210710 Hydrangea macrophylla HOM05D000836 ORTHO05D000709 7.9e-07 59.7 227 24.7
MD01G1199700 Malus domestica HOM05D000684 ORTHO05D008211 7.9e-07 59.7 153 30.1
HPP92_022469 Vanilla planifolia HOM05D001785 ORTHO05D012935 7.9e-07 59.7 80 36.2
Ca_00345_v3 Cicer arietinum L. HOM05D000836 ORTHO05D000709 1.0e-06 59.3 186 26.3
Glyma.13G237900 Glycine max HOM05D000836 ORTHO05D000709 1.8e-06 58.5 186 28.5
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 2.3e-06 58.2 183 24.0
Cfa003042 Carpinus fangiana HOM05D005151 ORTHO05D006322 2.3e-06 58.2 164 28.7
Cre13.g602700 Chlamydomonas reinhardtii HOM05D000684 ORTHO05D000688 2.3e-06 58.2 216 28.2
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 3.0e-06 57.8 153 31.4
Lalb_Chr18g0059501 Lupinus albus HOM05D000836 ORTHO05D000709 5.1e-06 57.0 213 25.4
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 6.7e-06 56.6 173 26.6


User provided reference genes

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