Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 0.0e+00 1147.5 587 100.0
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.3e-308 1062.4 587 94.0
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 4.4e-285 984.2 587 86.9
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.4e-283 978.4 587 86.7
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 3.4e-277 958.0 593 85.7
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 2.4e-259 898.7 589 82.3
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 1.1e-232 810.1 595 72.6
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 3.3e-232 808.5 575 74.6
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 3.3e-232 808.5 575 74.6
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 5.3e-230 801.2 575 74.8
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 5.9e-229 797.7 577 73.1
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.9e-227 792.7 614 72.5
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 9.4e-227 790.4 504 80.4
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 2.1e-226 789.3 573 73.8
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 7.9e-226 787.3 596 73.2
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.3e-223 780.0 535 74.6
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.7e-223 779.6 591 71.2
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 2.8e-223 778.9 594 68.9
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 3.7e-223 778.5 591 71.2
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 8.2e-223 777.3 584 70.5
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.1e-222 776.9 589 70.5
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 1.8e-222 776.2 588 70.1
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 2.4e-222 775.8 588 69.9
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 6.9e-222 774.2 572 71.3
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 1.5e-221 773.1 606 68.3
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 1.5e-221 773.1 595 69.2
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 2.0e-221 772.7 597 71.2
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 4.5e-221 771.5 595 70.1
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 5.9e-221 771.2 518 75.9
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 7.7e-221 770.8 571 70.6
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.7e-220 769.6 611 67.6
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 6.5e-220 767.7 592 68.8
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 1.4e-219 766.5 592 68.9
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 2.5e-219 765.8 552 72.3
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 2.5e-219 765.8 572 70.6
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 2.5e-219 765.8 588 70.2
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 5.5e-219 764.6 537 74.3
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 7.2e-219 764.2 583 69.5
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 1.2e-218 763.5 596 67.6
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 2.1e-218 762.7 560 70.4
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 2.1e-218 762.7 593 68.6
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 3.6e-218 761.9 592 68.9
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 3.6e-218 761.9 592 68.9
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 4.7e-218 761.5 555 71.5
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 6.1e-218 761.1 589 70.5
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 1.4e-217 760.0 592 68.8
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 1.4e-217 760.0 583 69.8
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 2.3e-217 759.2 584 67.6
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.9e-217 758.4 499 78.2
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 6.7e-217 757.7 599 67.9
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 8.8e-217 757.3 591 69.7
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 2.0e-216 756.1 574 69.5
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 2.6e-216 755.7 504 76.4
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 9.7e-216 753.8 589 68.1
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 1.3e-215 753.4 503 77.3
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.3e-215 753.4 597 67.8
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 3.7e-215 751.9 583 69.8
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 4.8e-215 751.5 504 75.0
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 6.3e-215 751.1 504 75.4
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 8.2e-215 750.7 534 72.8
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 1.8e-214 749.6 595 67.1
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 3.1e-214 748.8 535 71.4
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 3.1e-214 748.8 575 71.0
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 9.1e-214 747.3 590 68.5
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 9.1e-214 747.3 591 67.0
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.2e-213 746.9 546 71.1
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 2.6e-213 745.7 601 67.4
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.9e-212 742.3 593 67.3
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 5.0e-212 741.5 576 69.3
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.9e-211 739.6 598 66.7
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 1.9e-211 739.6 572 68.2
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 2.5e-211 739.2 576 70.3
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 2.1e-210 736.1 597 66.7
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 2.1e-210 736.1 590 68.5
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.7e-210 735.7 559 69.2
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 4.7e-210 734.9 664 62.7
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 4.0e-209 731.9 541 69.9
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.0e-208 729.6 601 65.7
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 2.6e-208 729.2 500 75.6
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.3e-208 728.8 589 66.6
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 4.4e-208 728.4 594 67.3
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 2.8e-207 725.7 597 66.2
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 1.1e-203 713.8 593 64.6
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.3e-201 706.1 626 62.9
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 2.3e-201 706.1 572 66.4
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 1.4e-198 696.8 588 64.3
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.3e-196 690.3 456 78.7
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 5.0e-196 688.3 544 68.2
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 4.7e-194 681.8 640 61.2
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 1.0e-193 680.6 521 68.5
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 2.3e-193 679.5 588 62.4
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 2.7e-189 666.0 530 67.4
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 2.9e-188 662.5 594 63.5
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 1.2e-184 650.6 543 63.0
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.4e-182 642.9 453 71.7
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 9.2e-182 641.0 627 57.3
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 1.7e-180 636.7 483 65.0
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 4.7e-178 628.6 572 59.6
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.0e-178 627.9 594 58.2
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 3.0e-172 609.4 579 58.5
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.9e-171 606.7 390 80.8
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 7.3e-171 604.7 468 69.2
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.2e-168 597.4 554 60.6
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.3e-159 567.4 439 63.8
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 4.9e-159 565.5 433 67.0
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.2e-154 550.8 520 58.1
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 4.3e-139 499.2 344 76.2
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.7e-135 487.3 441 56.5
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 1.4e-134 484.2 592 49.8
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 1.3e-132 477.6 483 52.6
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 2.6e-128 463.4 393 65.4
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.7e-127 460.7 401 59.4
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 2.9e-127 459.9 483 51.3
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 2.5e-126 456.8 470 50.2
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 6.7e-124 448.7 504 53.8
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 3.4e-120 436.4 386 65.8
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 6.9e-113 412.1 456 53.5
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.3e-108 397.1 266 76.3
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 5.5e-102 375.9 477 44.9
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.5e-88 329.7 330 53.0
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 1.1e-86 325.1 199 80.9
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 4.0e-76 290.0 225 64.9
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 2.8e-69 267.3 172 75.6
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 4.0e-68 263.5 228 62.7
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 4.9e-66 256.5 197 62.4
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 9.2e-65 252.3 259 49.0
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.7e-64 250.8 277 51.6
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.0e-63 248.8 389 39.1
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 8.0e-61 239.2 174 67.2
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.4e-57 228.4 131 83.2
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.0e-56 224.6 276 49.3
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 1.4e-52 211.8 286 44.1
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 2.3e-47 194.5 113 85.8
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 3.6e-45 187.2 128 71.1
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.3e-42 178.7 172 59.9
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.9e-38 164.9 269 40.5
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.4e-33 148.7 208 47.1
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 9.3e-33 146.0 106 67.9
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 3.3e-30 137.5 266 35.0
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 4.3e-30 137.1 122 58.2
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.6e-29 135.2 112 62.5
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.7e-26 125.2 95 68.4
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.4e-25 122.1 123 51.2
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 9.3e-25 119.4 268 33.6
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 2.7e-24 117.9 88 69.3
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 6.7e-23 113.2 88 61.4
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.9e-22 111.7 227 38.8
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.2e-18 98.2 91 54.9
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.1e-17 95.9 91 53.8
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 2.3e-15 88.2 51 90.2
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 2.3e-15 88.2 71 60.6
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 3.3e-14 84.3 71 57.7
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.8e-13 81.3 53 79.2
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 1.1e-12 79.3 52 80.8
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.3e-10 72.4 246 26.0
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 2.2e-10 71.6 59 61.0
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 2.9e-10 71.2 109 40.4
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 5.5e-09 67.0 40 82.5
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 1.0e-07 62.8 36 80.6
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 1.1e-06 59.3 283 24.7
Medtr1g007290 Medicago truncatula HOM05D004433 ORTHO05D005251 3.3e-06 57.8 52 51.9
CDE02G0724 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 4.3e-06 57.4 88 45.5


User provided reference genes

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