Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007689g0020 Nicotiana tabacum HOM05D003404 ORTHO05D004052 0.0e+00 1741.9 930 100.0
Nitab4.5_0003247g0080 Nicotiana tabacum HOM05D003404 ORTHO05D004052 0.0e+00 1556.2 880 95.1
Sopen01g045420 Solanum pennellii HOM05D003404 ORTHO05D004052 0.0e+00 1493.0 843 94.2
Solyc01g103010.4 Solanum lycopersicum HOM05D003404 ORTHO05D004052 0.0e+00 1485.3 843 94.0
CAN.G855.55 Capsicum annuum HOM05D003404 ORTHO05D004052 0.0e+00 1475.7 878 90.9
Peaxi162Scf00011g01927 Petunia axillaris HOM05D003404 ORTHO05D004052 0.0e+00 1393.3 821 92.1
CSS0015679 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D004052 0.0e+00 1370.5 880 83.2
Manes.07G030800 Manihot esculenta HOM05D003404 ORTHO05D004052 0.0e+00 1365.1 843 85.5
Lsat_1_v5_gn_9_83361 Lactuca sativa HOM05D003404 ORTHO05D004052 0.0e+00 1362.8 868 82.8
Gohir.A06G144600 Gossypium hirsutum HOM05D003404 ORTHO05D004052 0.0e+00 1355.1 884 81.6
Cc02_g23620 Coffea canephora HOM05D003404 ORTHO05D004052 0.0e+00 1353.6 920 80.7
ECA236G3319 Erigeron canadensis HOM05D003404 ORTHO05D004052 0.0e+00 1351.3 880 81.2
Gohir.D06G150300 Gossypium hirsutum HOM05D003404 ORTHO05D004052 0.0e+00 1350.9 884 81.6
Cfa004441 Carpinus fangiana HOM05D003404 ORTHO05D004052 0.0e+00 1346.3 879 81.1
Migut.B00720 Erythranthe guttata HOM05D003404 ORTHO05D004052 0.0e+00 1345.1 880 81.6
GSVIVG01023143001 Vitis vinifera HOM05D003404 ORTHO05D004052 0.0e+00 1344.3 907 79.8
Potri.003G000500 Populus trichocarpa HOM05D003404 ORTHO05D004052 0.0e+00 1343.6 880 81.2
MELO3C016463.2 Cucumis melo HOM05D003404 ORTHO05D004052 0.0e+00 1341.6 880 81.0
HanXRQChr15g0469691 Helianthus annuus HOM05D003404 ORTHO05D004052 0.0e+00 1341.6 881 80.8
CsaV3_3G006660 Cucumis sativus L. HOM05D003404 ORTHO05D004052 0.0e+00 1338.6 880 80.5
Sed0011322 Sechium edule HOM05D003404 ORTHO05D004052 0.0e+00 1337.8 843 83.2
Ciclev10000063m.g Citrus clementina HOM05D003404 ORTHO05D004052 0.0e+00 1337.4 880 79.9
Actinidia26195 Actinidia chinensis HOM05D003404 ORTHO05D004052 0.0e+00 1336.6 890 80.6
Gorai.010G175500 Gossypium raimondii HOM05D003404 ORTHO05D004052 0.0e+00 1336.6 912 78.9
Thecc.06G019500 Theobroma cacao HOM05D003404 ORTHO05D004052 0.0e+00 1335.5 880 80.6
Potri.004G229300 Populus trichocarpa HOM05D003404 ORTHO05D004052 0.0e+00 1335.1 880 80.7
Duzib192G0569 Durio zibethinus HOM05D003404 ORTHO05D004052 0.0e+00 1332.4 841 83.5
Prupe.2G322700 Prunus persica HOM05D003404 ORTHO05D004052 0.0e+00 1331.2 880 80.8
MSTRG.16466 Avicennia marina HOM05D003404 ORTHO05D004052 0.0e+00 1330.9 880 80.6
HanXRQChr04g0110261 Helianthus annuus HOM05D003404 ORTHO05D004052 0.0e+00 1327.8 839 84.0
CiPaw.05G001400 Carya illinoinensis HOM05D003404 ORTHO05D004052 0.0e+00 1327.0 879 80.2
Atru.chr6.225 Acer truncatum HOM05D003404 ORTHO05D004052 0.0e+00 1324.7 880 80.0
MD01G1232300 Malus domestica HOM05D003404 ORTHO05D004052 0.0e+00 1323.5 843 82.8
Glyma.17G002000 Glycine max HOM05D003404 ORTHO05D004052 0.0e+00 1322.0 880 79.7
SGA_v2.0_scaffold254G45235 Striga asiatica HOM05D003404 ORTHO05D004052 0.0e+00 1321.6 875 80.9
Lalb_Chr18g0061171 Lupinus albus HOM05D003404 ORTHO05D004052 0.0e+00 1318.9 843 82.2
MD07G1304100 Malus domestica HOM05D003404 ORTHO05D004052 0.0e+00 1317.8 880 79.7
RcHm_v2.0_Chr1g0383371 Rosa chinensis HOM05D003404 ORTHO05D004052 0.0e+00 1317.0 880 80.0
VMungo1215G2990 Vigna mungo HOM05D003404 ORTHO05D004052 0.0e+00 1316.2 880 79.4
CANSAT21G0984 Cannabis sativa HOM05D003404 ORTHO05D004052 0.0e+00 1315.4 880 79.3
Glyma.07G272400 Glycine max HOM05D003404 ORTHO05D004052 0.0e+00 1313.5 880 79.4
arahy.Tifrunner.gnm1.ann1.F0HWYS Arachis hypogaea HOM05D003404 ORTHO05D004052 0.0e+00 1310.4 857 81.3
arahy.Tifrunner.gnm1.ann1.TT7XH0 Arachis hypogaea HOM05D003404 ORTHO05D004052 0.0e+00 1309.7 857 81.4
FvH4_7g33400 Fragaria vesca HOM05D003404 ORTHO05D004052 0.0e+00 1309.3 880 79.5
Phvul.003G076300 Phaseolus vulgaris HOM05D003404 ORTHO05D004052 0.0e+00 1308.5 880 79.1
QL02p103380 Quercus lobata HOM05D003404 ORTHO05D004052 0.0e+00 1308.1 876 79.7
Nn5g27178 Nelumbo nucifera HOM05D003404 ORTHO05D004052 0.0e+00 1307.7 880 78.9
TWI14G1077 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 0.0e+00 1303.5 880 78.6
Lalb_Chr15g0090861 Lupinus albus HOM05D003404 ORTHO05D004052 0.0e+00 1302.7 843 81.7
Rhsim05G0115300 Rhododendron simsii HOM05D003404 ORTHO05D004052 0.0e+00 1302.3 1045 70.2
Medtr4g134620 Medicago truncatula HOM05D003404 ORTHO05D004052 0.0e+00 1300.4 842 80.6
Duzib235G1119 Durio zibethinus HOM05D003404 ORTHO05D004052 0.0e+00 1300.0 880 78.9
unitig_27.g24934 Utricularia gibba HOM05D003404 ORTHO05D004052 0.0e+00 1297.3 885 78.1
TAR376G0925 Trochodendron aralioides HOM05D003404 ORTHO05D004052 0.0e+00 1296.6 880 77.8
Dinv29635 Davidia involucrata HOM05D003404 ORTHO05D004052 0.0e+00 1290.0 780 86.9
TPR.G6014 Trifolium pratense HOM05D003404 ORTHO05D004052 0.0e+00 1289.6 842 80.2
Aqoxy5G01845 Aquilegia oxysepala HOM05D003404 ORTHO05D004052 0.0e+00 1288.9 880 76.7
Lj4g0008829 Lotus japonicus HOM05D003404 ORTHO05D004052 0.0e+00 1288.5 842 80.8
Psat4g002640 Pisum sativum HOM05D003404 ORTHO05D004052 0.0e+00 1287.7 842 80.0
TWI59G0557 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 0.0e+00 1286.9 880 77.6
ClCG10G007400 Citrullus lanatus HOM05D003404 ORTHO05D004052 0.0e+00 1283.5 829 82.5
vmacro19829 Vaccinium macrocarpon HOM05D003404 ORTHO05D004052 0.0e+00 1279.2 896 77.5
PSO210G7577 Papaver somniferum HOM05D003404 ORTHO05D004052 0.0e+00 1275.4 843 79.5
PGR042G3714 Punica granatum HOM05D003404 ORTHO05D004052 0.0e+00 1272.7 843 80.7
PSO761G0035 Papaver somniferum HOM05D003404 ORTHO05D004052 0.0e+00 1268.1 850 78.5
Sabra01G0174500 Salix brachista HOM05D003404 ORTHO05D004052 0.0e+00 1268.1 931 73.3
THA.LOC104805135 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 0.0e+00 1265.4 881 77.1
Sc12g0008780 Simmondsia chinensis HOM05D003404 ORTHO05D004052 0.0e+00 1255.4 880 75.0
Lj5C285G4 Lonicera japonica HOM05D003404 ORTHO05D004052 0.0e+00 1255.0 880 78.2
EL10Ac6g13982 Beta vulgaris HOM05D003404 ORTHO05D004052 0.0e+00 1254.2 843 79.2
Thhalv10003535m.g Eutrema salsugineum HOM05D003404 ORTHO05D004052 0.0e+00 1251.5 843 78.1
AL5G11830 Arabidopsis lyrata HOM05D003404 ORTHO05D004052 0.0e+00 1250.3 843 77.7
Carub.0005s0156 Capsella rubella HOM05D003404 ORTHO05D004052 0.0e+00 1249.2 843 77.6
CARHR145090 Cardamine hirsuta HOM05D003404 ORTHO05D004052 0.0e+00 1247.3 843 77.6
Sp2g13790 Schrenkiella parvula HOM05D003404 ORTHO05D004052 0.0e+00 1246.5 843 77.8
THA.LOC104801780 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 0.0e+00 1245.7 880 75.6
AT2G02560 Arabidopsis thaliana HOM05D003404 ORTHO05D004052 0.0e+00 1243.4 843 77.1
BcaC03g17156 Brassica carinata HOM05D003404 ORTHO05D004052 0.0e+00 1238.0 843 77.1
BraA02t08325Z Brassica rapa HOM05D003404 ORTHO05D004052 0.0e+00 1234.2 843 76.7
BcaB07g30328 Brassica carinata HOM05D003404 ORTHO05D004052 0.0e+00 1232.6 843 76.9
Dinv29680 Davidia involucrata HOM05D003404 ORTHO05D004052 0.0e+00 1231.9 759 86.0
C02p50810 Brassica napus HOM05D003404 ORTHO05D004052 0.0e+00 1229.9 856 75.9
Os02g0167700 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 0.0e+00 1229.9 843 76.4
BolC2t11162H Brassica oleracea HOM05D003404 ORTHO05D004052 0.0e+00 1228.0 856 75.8
BolC7t43839H Brassica oleracea HOM05D003404 ORTHO05D004052 0.0e+00 1227.6 890 73.6
Ah.03g136760 Amaranthus hybridus HOM05D003404 ORTHO05D004052 0.0e+00 1226.8 843 77.6
A02p33040 Brassica napus HOM05D003404 ORTHO05D004052 0.0e+00 1226.1 869 74.9
Eucgr.G00074 Eucalyptus grandis HOM05D003404 ORTHO05D004052 0.0e+00 1223.0 830 78.8
Aa31LG2G7580 Aethionema arabicum HOM05D003404 ORTHO05D004052 0.0e+00 1221.5 896 73.3
DCAR_001727 Daucus carota HOM05D003404 ORTHO05D004052 0.0e+00 1221.5 881 77.3
C07p33270 Brassica napus HOM05D003404 ORTHO05D004052 0.0e+00 1216.1 879 73.8
BraA06t27242Z Brassica rapa HOM05D003404 ORTHO05D004052 0.0e+00 1207.6 844 75.9
Ca_13528_v3 Cicer arietinum L. HOM05D003404 ORTHO05D004052 0.0e+00 1203.0 933 69.9
Haze_09982 Corylus avellana HOM05D003404 ORTHO05D004052 0.0e+00 1201.0 879 74.7
Sabra03G0000100 Salix brachista HOM05D003404 ORTHO05D004052 0.0e+00 1201.0 964 69.2
MBI06_g16624_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 0.0e+00 1195.3 896 72.9
A06p43570 Brassica napus HOM05D003404 ORTHO05D004052 0.0e+00 1194.5 833 76.1
HPP92_001482 Vanilla planifolia HOM05D003404 ORTHO05D004052 0.0e+00 1180.6 844 73.8
CDE05G1207 Ceratophyllum demersum HOM05D003404 ORTHO05D004052 0.0e+00 1178.3 843 74.3
COL.COLO4_31122 Corchorus olitorius HOM05D003404 ORTHO05D004052 0.0e+00 1168.3 871 72.6
Zm00001eb207390 Zea mays HOM05D003404 ORTHO05D004052 0.0e+00 1128.2 843 70.8
FAN01G2685 Fragaria x ananassa HOM05D003404 ORTHO05D004052 0.0e+00 1122.5 880 70.8
FAN03G0122 Fragaria x ananassa HOM05D003404 ORTHO05D004052 0.0e+00 1094.7 866 70.4
AUR62042960 Chenopodium quinoa HOM05D003404 ORTHO05D004052 0.0e+00 1077.8 880 68.0
Mapoly0029s0003 Marchantia polymorpha HOM05D003404 ORTHO05D004052 2.1e-305 1052.4 834 67.5
Pp3c8_3260 Physcomitrium patens HOM05D003404 ORTHO05D004052 2.1e-305 1052.4 843 66.1
BcaC06g31227 Brassica carinata HOM05D003404 ORTHO05D004052 1.4e-304 1049.7 737 74.9
Pp3c4_6460 Physcomitrium patens HOM05D003404 ORTHO05D004052 8.8e-304 1047.0 843 66.3
SMO364G0878 Selaginella moellendorffii HOM05D003404 ORTHO05D004052 3.3e-303 1045.0 832 67.3
AUR62043067 Chenopodium quinoa HOM05D003404 ORTHO05D004052 7.0e-293 1010.7 843 66.5
AagrBONN_evm.TU.Sc2ySwM_228.3869 Anthoceros agrestis HOM05D003404 ORTHO05D004052 6.3e-278 961.1 850 61.6
SHI05020 Sapria himalayana HOM05D003404 ORTHO05D004052 2.6e-263 912.5 838 60.6
CBR_g18772 Chara braunii HOM05D003404 ORTHO05D004052 4.6e-236 822.0 773 58.0
BcaC06g31225 Brassica carinata HOM05D003404 ORTHO05D004052 7.9e-220 768.1 532 76.5
ATR1089G109 Amborella trichopoda HOM05D003404 ORTHO05D004052 3.7e-193 679.5 493 72.8
Oeu028473.1 Olea europaea HOM05D003404 ORTHO05D004052 3.3e-165 586.6 359 84.1
arahy.Tifrunner.gnm1.ann1.4Z0G7J Arachis hypogaea HOM05D003404 ORTHO05D004052 2.4e-160 570.5 427 72.4
ATR1089G005 Amborella trichopoda HOM05D003404 ORTHO05D004052 2.0e-154 550.8 376 77.7
Haze_26135 Corylus avellana HOM05D003404 ORTHO05D004052 7.0e-144 515.8 908 37.4
Cre03.g177053 Chlamydomonas reinhardtii HOM05D003404 ORTHO05D004052 2.9e-137 493.8 951 38.3
MBI06_g14248_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 7.8e-135 485.7 374 69.3
Os02g0169800 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 3.6e-116 423.7 290 73.1
PRCOL_00003487 Prasinoderma coloniale HOM05D003404 ORTHO05D004052 1.0e-110 405.6 838 35.0
BcaC06g31226 Brassica carinata HOM05D003404 ORTHO05D004052 1.6e-108 398.3 276 73.6
MCO07G702 Micromonas commoda HOM05D003404 ORTHO05D004052 7.4e-101 372.9 876 34.1
Oeu028474.1 Olea europaea HOM05D003404 ORTHO05D004052 8.2e-92 342.8 249 78.7
Zm00001eb178910 Zea mays HOM05D003404 ORTHO05D004052 9.1e-83 312.8 188 78.7
FAN10G3720 Fragaria x ananassa HOM05D003404 ORTHO05D004052 2.6e-77 294.7 198 75.3
FAN10G0829 Fragaria x ananassa HOM05D003404 ORTHO05D004052 7.4e-77 293.1 198 74.7
Actinidia01637 Actinidia chinensis HOM05D003404 ORTHO05D004052 4.7e-71 273.9 176 79.5
SEGI_11687 Sequoiadendron giganteum HOM05D003404 ORTHO05D000003 1.0e-70 272.7 182 74.2
Zm00001eb006600 Zea mays HOM05D003404 ORTHO05D004052 6.7e-70 270.0 184 73.9
BcaC06g34049 Brassica carinata HOM05D003404 ORTHO05D004052 9.7e-69 266.2 195 68.7
arahy.Tifrunner.gnm1.ann1.7AK1LE Arachis hypogaea HOM05D003404 ORTHO05D004052 5.7e-61 240.4 210 67.1
SEGI_37814 Sequoiadendron giganteum HOM05D003404 ORTHO05D004052 2.1e-55 221.9 197 56.9
Hund15388 Selenicereus undatus HOM05D003404 ORTHO05D004052 1.4e-51 209.1 432 38.9
Gohir.A11G223200 Gossypium hirsutum HOM05D003404 ORTHO05D004052 2.4e-51 208.4 163 69.3
arahy.Tifrunner.gnm1.ann1.V95A4R Arachis hypogaea HOM05D003404 ORTHO05D004052 3.5e-50 204.5 287 47.7
Cfa023835 Carpinus fangiana HOM05D003404 ORTHO05D004052 3.5e-50 204.5 848 26.8
Lsat_1_v5_gn_8_101580 Lactuca sativa HOM05D001355 ORTHO05D004052 5.0e-49 200.7 147 74.1
Lsat_1_v5_gn_4_49821 Lactuca sativa HOM05D003404 ORTHO05D004052 8.9e-46 189.9 112 84.8
arahy.Tifrunner.gnm1.ann1.M7XV95 Arachis hypogaea HOM05D003404 ORTHO05D004052 7.5e-45 186.8 215 57.2
Lsat_1_v5_gn_3_80641 Lactuca sativa HOM05D003404 ORTHO05D004052 1.7e-44 185.7 114 80.7
Prupe.6G174400 Prunus persica HOM05D003404 ORTHO05D004052 8.6e-41 173.3 206 51.0
arahy.Tifrunner.gnm1.ann1.GKM8IL Arachis hypogaea HOM05D003404 ORTHO05D004052 1.5e-37 162.5 191 56.0
Hund15376 Selenicereus undatus HOM05D003404 ORTHO05D004052 6.4e-36 157.1 137 64.2
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 1.9e-32 145.6 168 53.6
arahy.Tifrunner.gnm1.ann1.R2063T Arachis hypogaea HOM05D003404 ORTHO05D004052 6.2e-31 140.6 90 82.2
Actinidia01639 Actinidia chinensis HOM05D003404 ORTHO05D004052 2.4e-27 128.6 76 85.5
PGSC0003DMG400025772 Solanum tuberosum HOM05D001465 ORTHO05D001434 1.6e-26 125.9 271 34.7
RcHm_v2.0_Chr3g0481561 Rosa chinensis HOM05D003404 ORTHO05D029456 8.6e-25 120.2 91 69.2
Actinidia04155 Actinidia chinensis HOM05D003404 ORTHO05D004052 3.3e-24 118.2 263 35.0
TPR.G18134 Trifolium pratense HOM05D003404 ORTHO05D004052 3.3e-24 118.2 85 77.6
Atru.chr8.1282 Acer truncatum HOM05D003404 ORTHO05D004052 1.2e-23 116.3 73 78.1
HPP92_012169 Vanilla planifolia HOM05D003404 ORTHO05D004052 1.2e-23 116.3 129 52.7
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 4.7e-23 114.4 168 44.6
Lsat_1_v5_gn_6_52600 Lactuca sativa HOM05D003404 ORTHO05D016190 3.1e-22 111.7 73 79.5
Cfa005443 Carpinus fangiana HOM05D003404 ORTHO05D004052 7.6e-21 107.1 61 86.9
Cfa012819 Carpinus fangiana HOM05D003404 ORTHO05D004052 7.6e-21 107.1 61 86.9
arahy.Tifrunner.gnm1.ann1.HGQ6MN Arachis hypogaea HOM05D003404 ORTHO05D004052 1.3e-20 106.3 81 71.6
FvH4_3g22840 Fragaria vesca HOM05D003404 ORTHO05D004052 5.4e-19 100.9 102 57.8
TPR.G7178 Trifolium pratense HOM05D003404 ORTHO05D004052 5.4e-19 100.9 82 63.4
Atru.chr11.445 Acer truncatum HOM05D000107 ORTHO05D000062 1.2e-18 99.8 69 75.4
TPR.G35220 Trifolium pratense HOM05D003404 ORTHO05D037367 3.5e-18 98.2 78 65.4
Pp3c21_4800 Physcomitrium patens HOM05D003404 ORTHO05D004052 3.3e-16 91.7 70 60.0
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 4.3e-16 91.3 60 76.7
TPR.G40778 Trifolium pratense HOM05D003404 ORTHO05D004052 1.8e-14 85.9 70 55.7
TPR.G15895 Trifolium pratense HOM05D003404 ORTHO05D004052 3.4e-13 81.6 55 67.3
TPR.G35216 Trifolium pratense HOM05D003404 ORTHO05D037367 1.7e-12 79.3 69 72.5
HPP92_012174 Vanilla planifolia HOM05D017293 ORTHO05D019386 4.9e-12 77.8 72 61.1
Lsat_1_v5_gn_5_51840 Lactuca sativa HOM05D000113 ORTHO05D012184 1.1e-11 76.6 69 63.8
VMungo1080G1281 Vigna mungo HOM05D003404 ORTHO05D004052 1.4e-11 76.3 39 87.2
Sopen01g049870 Solanum pennellii HOM05D003404 ORTHO05D004052 5.4e-11 74.3 133 40.6
Lsat_1_v5_gn_5_63380 Lactuca sativa HOM05D000113 ORTHO05D012184 1.2e-10 73.2 48 77.1
TPR.G35222 Trifolium pratense HOM05D003691 ORTHO05D004288 1.6e-10 72.8 53 75.5
HPP92_012173 Vanilla planifolia HOM05D017293 ORTHO05D019386 4.6e-10 71.2 54 68.5
TPR.G21811 Trifolium pratense HOM05D002870 ORTHO05D003241 1.1e-08 66.6 61 50.8
VMungo0112G0001 Vigna mungo HOM05D003404 ORTHO05D004052 1.9e-08 65.9 73 52.1
HPP92_012175 Vanilla planifolia HOM05D017293 ORTHO05D019386 4.3e-08 64.7 64 56.2
SalBow1G0245 Salvia bowleyana HOM05D002043 ORTHO05D002207 1.6e-07 62.8 87 43.7
Psat4g002600 Pisum sativum HOM05D003404 ORTHO05D037367 4.8e-07 61.2 57 70.2
Zm00001eb112530 Zea mays HOM05D038755 ORTHO05D001566 4.0e-06 58.2 60 50.0
TPR.G21366 Trifolium pratense HOM05D003404 ORTHO05D004052 6.9e-06 57.4 48 70.8


User provided reference genes

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