Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006677g0040 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 2365.9 1201 100.0
Nitab4.5_0003845g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 2199.5 1227 91.1
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1925.6 1213 80.5
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1906.0 1213 80.0
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 0.0e+00 1719.5 1189 74.5
Peaxi162Scf00094g01313 Petunia axillaris HOM05D003688 ORTHO05D004338 0.0e+00 1666.7 1206 70.9
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1626.3 1214 69.3
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1610.5 1214 68.7
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 0.0e+00 1584.3 1214 67.7
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 1577.8 1190 68.2
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 0.0e+00 1398.6 1203 61.1
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1395.2 1230 59.5
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 0.0e+00 1384.8 1222 59.7
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 0.0e+00 1382.1 1246 59.1
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 0.0e+00 1327.4 1205 58.6
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 1325.5 1150 62.8
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 0.0e+00 1317.8 1199 58.0
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 0.0e+00 1303.5 1231 56.6
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 0.0e+00 1302.0 1228 56.5
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 0.0e+00 1283.5 1229 55.9
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 0.0e+00 1279.6 1222 54.9
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 0.0e+00 1276.5 1231 56.1
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 0.0e+00 1263.1 1228 55.4
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 0.0e+00 1260.7 1204 55.5
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 0.0e+00 1259.2 1226 55.1
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1257.7 1250 55.0
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 0.0e+00 1252.3 1228 55.5
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1248.4 1225 54.7
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 0.0e+00 1245.0 1229 55.1
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 0.0e+00 1244.2 1234 54.1
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 0.0e+00 1240.7 1225 54.5
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 0.0e+00 1229.5 1232 54.5
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 0.0e+00 1229.2 1234 54.9
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 0.0e+00 1223.0 1233 53.7
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1212.2 1231 53.5
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1209.9 1240 53.5
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1207.6 1229 53.8
Oeu036138.2 Olea europaea HOM05D003688 ORTHO05D004338 0.0e+00 1205.3 1146 56.3
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1203.7 1231 53.3
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1201.8 1237 53.9
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1199.9 1228 54.2
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 0.0e+00 1196.8 1228 54.2
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1194.9 1228 53.4
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1194.9 1223 53.9
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1192.2 1234 53.0
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1192.2 1216 52.5
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1185.6 1259 52.6
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1182.9 1228 52.6
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 0.0e+00 1176.4 1229 52.6
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1170.2 1258 52.1
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 0.0e+00 1167.1 1231 52.5
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1164.8 1269 51.9
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1163.7 1229 52.4
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1162.1 1230 52.1
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1161.7 1166 55.3
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 0.0e+00 1160.6 1269 51.5
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 0.0e+00 1154.0 1204 53.6
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 0.0e+00 1153.7 1230 51.9
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1150.2 1229 51.7
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1149.8 1232 51.5
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 0.0e+00 1147.5 1225 52.1
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 0.0e+00 1144.0 1225 51.1
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 0.0e+00 1143.3 1227 51.8
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1140.9 1232 51.0
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 0.0e+00 1140.6 1223 51.9
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 0.0e+00 1139.8 1228 51.3
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 0.0e+00 1139.4 1224 53.1
CAN.G326.3 Capsicum annuum HOM05D003688 ORTHO05D004338 0.0e+00 1137.5 703 79.8
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1135.6 1277 49.3
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 0.0e+00 1134.8 1228 49.8
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1133.2 1236 51.6
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1126.7 1226 51.2
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1126.3 1364 47.9
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1125.9 1225 50.5
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1122.8 1238 51.4
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1121.7 1230 50.2
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 0.0e+00 1117.8 1226 51.0
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1116.3 1233 50.4
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 0.0e+00 1114.0 1225 50.4
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1092.8 1241 50.1
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1091.6 1237 50.0
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1080.5 1236 49.6
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1078.5 1232 49.5
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 8.2e-312 1074.7 1235 48.3
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 3.6e-310 1068.5 1218 49.8
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 9.0e-309 1063.9 1169 50.7
MBI14_g36919_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 6.4e-307 1057.7 1226 49.6
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 2.4e-306 1055.8 1218 49.0
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 2.3e-304 1049.3 1233 49.3
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 4.6e-297 1025.0 1244 48.2
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 2.3e-296 1022.7 1233 47.4
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 7.4e-295 1017.7 1233 47.4
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 2.4e-293 1012.7 1233 47.3
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 2.4e-293 1012.7 1244 47.5
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 8.8e-280 967.6 1233 45.7
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 8.5e-275 951.0 1223 46.2
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 3.3e-271 939.1 1223 44.6
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 4.4e-271 938.7 1222 45.3
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 9.7e-271 937.6 1228 45.0
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 2.2e-270 936.4 1269 44.3
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 1.1e-269 934.1 1223 45.2
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 1.8e-269 933.3 1223 45.1
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 4.1e-269 932.2 1221 45.1
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 7.0e-269 931.4 1221 45.0
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 9.1e-269 931.0 1240 45.1
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 5.9e-268 928.3 1235 44.6
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 9.4e-266 921.0 1247 44.9
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 2.3e-264 916.4 1226 44.5
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 6.7e-264 914.8 1235 44.2
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 8.8e-264 914.4 1247 43.6
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 3.3e-263 912.5 1235 44.2
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 9.7e-263 911.0 1228 44.6
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 4.8e-262 908.7 1214 44.8
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 6.3e-262 908.3 1220 43.9
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 1.8e-261 906.7 1214 44.8
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 2.9e-259 899.4 1211 44.8
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 4.8e-254 882.1 1208 44.4
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 4.8e-254 882.1 1208 44.4
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 9.1e-253 877.9 1228 42.6
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 3.8e-251 872.5 1247 44.2
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 1.0e-232 811.2 1290 39.3
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 5.2e-232 808.9 1195 43.1
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 9.5e-226 788.1 1226 40.6
Cpa.g.sc228.14 Carica papaya HOM05D003688 ORTHO05D004338 4.0e-216 756.1 825 52.4
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 3.2e-197 693.3 1092 40.4
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 5.3e-192 676.0 1243 37.9
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.2e-188 664.8 1307 34.5
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 4.5e-183 646.4 1220 36.4
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.7e-182 644.4 1313 34.3
Os01g0148050 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 2.2e-182 644.0 989 41.6
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 1.1e-181 641.7 1256 35.1
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.2e-181 640.2 1310 33.8
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 4.2e-181 639.8 1260 34.9
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 5.5e-181 639.4 1339 34.1
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 6.7e-179 632.5 1299 33.7
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 6.7e-179 632.5 1299 33.7
CAN.G326.2 Capsicum annuum HOM05D003688 ORTHO05D004338 8.2e-161 572.4 353 84.4
Atru.chr8.1976 Acer truncatum HOM05D003688 ORTHO05D004338 4.4e-154 550.1 515 55.7
BcaC03g18435 Brassica carinata HOM05D003688 ORTHO05D004338 1.5e-149 535.0 1195 34.1
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 9.1e-136 489.2 416 61.8
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 2.5e-117 427.9 828 36.2
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 4.3e-117 427.2 1591 26.0
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 2.1e-103 381.7 400 55.5
Haze_03516 Corylus avellana HOM05D003688 ORTHO05D004338 3.6e-100 370.9 347 52.7
Oeu051935.1 Olea europaea HOM05D003688 ORTHO05D004338 3.5e-87 327.8 269 58.7
Psat2g029320 Pisum sativum HOM05D003688 ORTHO05D017064 2.6e-42 178.7 185 47.6
SHI12676 Sapria himalayana HOM05D003688 ORTHO05D004338 3.8e-41 174.9 465 30.8
Atru.chr8.1977 Acer truncatum HOM05D003688 ORTHO05D004338 8.5e-41 173.7 170 56.5
PRCOL_00001936 Prasinoderma coloniale HOM05D003688 ORTHO05D004338 9.4e-40 170.2 1312 22.0
SHI12675 Sapria himalayana HOM05D003688 ORTHO05D004338 4.4e-37 161.4 253 37.5
Lsat_1_v5_gn_4_33481 Lactuca sativa HOM05D003688 ORTHO05D004338 1.4e-30 139.8 171 50.9
MBI19_g16672_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 2.4e-19 102.4 127 47.2
AagrBONN_evm.TU.Sc2ySwM_344.5255 Anthoceros agrestis HOM05D003688 ORTHO05D004338 2.5e-16 92.4 1288 19.9
Pp3c7_22570 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.0e-14 85.5 188 28.7
Mapoly0028s0055 Marchantia polymorpha HOM05D003688 ORTHO05D004338 4.0e-14 85.1 649 21.9
Pp3c15_3560 Physcomitrium patens HOM05D003688 ORTHO05D004338 9.8e-13 80.5 190 28.9
unitig_0.g701 Utricularia gibba HOM05D003688 ORTHO05D004338 1.3e-12 80.1 45 80.0
Pp3c9_4700 Physcomitrium patens HOM05D003688 ORTHO05D004338 4.9e-12 78.2 198 29.8
Sc20g0004940 Simmondsia chinensis HOM05D003688 ORTHO05D004338 7.0e-11 74.3 41 80.5
Pp3c2_29090 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.2e-10 73.6 184 26.6
Pp3c17_2850 Physcomitrium patens HOM05D003688 ORTHO05D004338 5.0e-09 68.2 117 32.5
MCO04G508 Micromonas commoda HOM05D003688 ORTHO05D004338 2.3e-06 59.3 718 22.1


User provided reference genes

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