Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 4.5e-236 820.8 409 100.0
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 1.3e-230 802.7 412 97.3
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 5.2e-216 754.2 433 88.2
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 2.0e-215 752.3 433 88.2
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 2.6e-215 751.9 433 88.2
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 5.4e-213 744.2 435 87.4
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 1.3e-203 713.0 433 85.2
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 2.3e-192 675.6 431 80.3
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 1.3e-190 669.8 416 81.5
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 8.3e-190 667.2 406 82.5
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 8.3e-190 667.2 432 79.6
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 1.1e-189 666.8 431 79.6
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 1.9e-189 666.0 433 79.2
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 4.1e-189 664.8 413 82.6
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 7.0e-189 664.1 432 79.6
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 2.1e-188 662.5 437 78.7
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 4.6e-188 661.4 440 77.3
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 6.0e-188 661.0 416 80.3
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 6.0e-188 661.0 440 77.0
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 1.3e-187 659.8 399 83.0
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 1.7e-187 659.4 440 78.6
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 3.9e-187 658.3 433 77.8
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 3.9e-187 658.3 433 78.8
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 6.6e-187 657.5 433 79.0
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 8.6e-187 657.1 440 76.6
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 8.6e-187 657.1 440 77.7
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 1.1e-186 656.8 388 84.0
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 1.1e-186 656.8 399 82.7
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.5e-186 655.6 440 76.8
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 2.5e-186 655.6 434 77.9
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 3.3e-186 655.2 395 83.5
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 5.6e-186 654.4 434 77.4
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 7.3e-186 654.1 435 77.2
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 9.5e-186 653.7 396 83.1
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 1.2e-185 653.3 393 83.2
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 1.2e-185 653.3 393 83.2
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 1.2e-185 653.3 395 83.3
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 1.2e-185 653.3 435 77.7
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 2.8e-185 652.1 405 80.7
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 8.1e-185 650.6 435 78.2
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 1.1e-184 650.2 433 77.1
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 1.1e-184 650.2 433 76.9
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 1.4e-184 649.8 433 77.4
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 1.4e-184 649.8 433 77.6
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 1.8e-184 649.4 433 77.1
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 1.8e-184 649.4 394 82.7
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 2.3e-184 649.0 434 78.3
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 3.1e-184 648.7 435 78.2
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 3.1e-184 648.7 404 80.2
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 3.1e-184 648.7 393 82.7
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 3.1e-184 648.7 435 77.5
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 3.1e-184 648.7 435 77.5
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 5.2e-184 647.9 437 77.1
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 6.8e-184 647.5 397 81.6
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 8.9e-184 647.1 434 77.6
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 1.2e-183 646.7 397 80.9
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 1.5e-183 646.4 437 77.1
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 2.0e-183 646.0 397 81.6
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 2.6e-183 645.6 437 77.3
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 4.4e-183 644.8 413 79.2
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 5.8e-183 644.4 394 81.2
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 7.5e-183 644.0 433 76.4
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 9.9e-183 643.7 394 81.2
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 1.3e-182 643.3 398 80.2
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 2.9e-182 642.1 380 84.5
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 8.3e-182 640.6 433 76.7
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 1.9e-181 639.4 392 81.4
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 4.1e-181 638.3 397 80.6
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 5.4e-181 637.9 419 78.0
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 7.1e-181 637.5 379 83.9
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 1.6e-180 636.3 433 75.5
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 2.1e-180 636.0 436 75.7
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 2.7e-180 635.6 398 78.6
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 4.6e-180 634.8 397 80.1
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 7.8e-180 634.0 397 80.1
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 5.1e-179 631.3 432 75.5
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 8.6e-179 630.6 408 77.7
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 1.5e-178 629.8 396 79.8
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 1.5e-178 629.8 420 77.4
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 3.3e-178 628.6 390 81.3
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 4.3e-178 628.2 396 79.5
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 5.6e-178 627.9 395 80.5
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 5.6e-178 627.9 414 77.8
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 9.5e-178 627.1 393 79.9
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 1.6e-177 626.3 395 79.2
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 1.6e-177 626.3 395 80.5
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 2.8e-177 625.5 394 79.2
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 3.6e-177 625.2 425 75.1
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 4.7e-177 624.8 431 74.9
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 4.7e-177 624.8 409 77.8
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 4.7e-177 624.8 393 79.1
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 8.1e-177 624.0 431 75.2
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 1.1e-176 623.6 431 74.9
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 1.1e-176 623.6 398 79.1
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.1e-176 623.6 368 84.0
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 1.8e-176 622.9 368 84.5
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 2.4e-176 622.5 393 80.2
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 3.1e-176 622.1 396 79.3
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 1.2e-175 620.2 396 78.5
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 1.2e-175 620.2 393 79.9
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 6.4e-174 614.4 393 79.4
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 8.4e-174 614.0 441 73.2
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 7.1e-173 610.9 385 79.7
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 7.8e-172 607.4 394 77.4
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 1.7e-171 606.3 458 70.3
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 3.1e-168 595.5 402 76.9
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 7.1e-165 584.3 361 82.5
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 2.1e-164 582.8 368 79.1
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 2.7e-164 582.4 386 73.8
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 3.9e-163 578.6 382 71.7
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 5.1e-163 578.2 427 68.4
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 9.0e-160 567.4 378 73.5
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 2.0e-159 566.2 324 85.2
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 9.9e-159 563.9 379 73.4
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 4.0e-152 542.0 312 85.6
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 8.4e-150 534.3 378 69.6
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 1.8e-147 526.6 378 67.7
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 1.1e-144 517.3 394 69.3
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 1.5e-143 513.5 338 74.6
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 1.1e-138 497.3 369 67.5
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 2.6e-135 486.1 378 63.2
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 3.4e-135 485.7 359 68.8
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 2.6e-127 459.5 288 79.9
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 2.3e-115 419.9 406 58.4
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 4.4e-114 415.6 299 72.2
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 2.4e-104 383.3 280 72.1
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.3e-94 350.9 267 70.0
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 3.0e-70 270.0 186 75.3
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 1.4e-64 251.1 308 43.2
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 3.5e-63 246.5 308 42.9
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 2.2e-49 200.7 107 88.8
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 1.3e-44 184.9 99 90.9
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 2.0e-26 124.4 118 60.2
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 3.5e-23 113.6 84 69.0
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 8.7e-22 109.0 57 84.2
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 9.0e-19 99.0 84 63.1
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 1.9e-16 91.3 84 59.5
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 3.2e-16 90.5 84 58.3
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 2.7e-15 87.4 258 29.8
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 6.1e-15 86.3 56 78.6
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 1.8e-11 74.7 79 53.2
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 1.9e-08 64.7 40 72.5
BolC3t17202H Brassica oleracea HOM05D000003 ORTHO05D001498 8.8e-06 55.8 39 71.8


User provided reference genes

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