Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006291g0070 Nicotiana tabacum HOM05D000399 ORTHO05D010012 4.3e-25 117.1 55 100.0
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 1.1e-23 112.5 55 96.4
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 4.2e-20 100.5 53 88.7
Sopen03g036060 Solanum pennellii HOM05D000399 ORTHO05D010012 1.2e-19 99.0 52 90.4
MD17G1220100 Malus domestica HOM05D000399 ORTHO05D010012 1.2e-11 72.4 53 62.3
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 1.3e-10 68.9 53 60.4
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 3.9e-10 67.4 50 64.0
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 3.9e-10 67.4 50 64.0
Duzib160G0247 Durio zibethinus HOM05D000399 ORTHO05D010012 3.9e-10 67.4 50 66.0
Duzib235G0300 Durio zibethinus HOM05D000399 ORTHO05D010012 3.9e-10 67.4 50 62.0
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 5.1e-10 67.0 53 58.5
Prupe.3G095800 Prunus persica HOM05D000399 ORTHO05D010012 5.1e-10 67.0 53 58.5
Thecc.06G038100 Theobroma cacao HOM05D000399 ORTHO05D010012 5.1e-10 67.0 50 62.0
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 6.7e-10 66.6 50 60.0
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 8.7e-10 66.2 50 62.0
Haze_16641 Corylus avellana HOM05D000399 ORTHO05D010012 8.7e-10 66.2 51 62.7
SGA_v2.0_scaffold5G02750 Striga asiatica HOM05D000399 ORTHO05D010012 8.7e-10 66.2 53 62.3
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 1.1e-09 65.9 50 62.0
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.5e-09 65.5 50 62.0
A02p23280 Brassica napus HOM05D000399 ORTHO05D010012 2.5e-09 64.7 49 65.3
BraA02t07324Z Brassica rapa HOM05D000399 ORTHO05D010012 2.5e-09 64.7 49 65.3
Cpa.g.sc10.115 Carica papaya HOM05D000399 ORTHO05D010012 2.5e-09 64.7 50 58.0
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 2.5e-09 64.7 53 52.8
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 2.5e-09 64.7 53 52.8
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 2.5e-09 64.7 52 57.7
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 3.3e-09 64.3 52 57.7
COL.COLO4_26655 Corchorus olitorius HOM05D000399 ORTHO05D010012 3.3e-09 64.3 55 58.2
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 3.3e-09 64.3 53 56.6
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 3.3e-09 64.3 52 53.8
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 3.3e-09 64.3 49 59.2
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 4.3e-09 63.9 50 60.0
CDE08G0493 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 4.3e-09 63.9 50 54.0
FAN15G2526 Fragaria x ananassa HOM05D032538 ORTHO05D010012 4.3e-09 63.9 53 56.6
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 4.3e-09 63.9 53 54.7
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 5.7e-09 63.5 52 55.8
BcaC03g15940 Brassica carinata HOM05D000399 ORTHO05D010012 5.7e-09 63.5 55 60.0
C02p37020 Brassica napus HOM05D000399 ORTHO05D010012 5.7e-09 63.5 55 60.0
BolC2t09718H Brassica oleracea HOM05D000134 ORTHO05D002396 5.7e-09 63.5 55 60.0
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 5.7e-09 63.5 53 58.5
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 5.7e-09 63.5 50 60.0
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 5.7e-09 63.5 55 60.0
THA.LOC104813580 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 5.7e-09 63.5 50 58.0
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 7.4e-09 63.2 53 58.5
Gorai.006G107400 Gossypium raimondii HOM05D000399 ORTHO05D010012 7.4e-09 63.2 55 60.0
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 9.7e-09 62.8 50 56.0
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 9.7e-09 62.8 50 58.0
AT4G00420 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 1.3e-08 62.4 54 57.4
CARHR016360 Cardamine hirsuta HOM05D000399 ORTHO05D010012 1.3e-08 62.4 53 58.5
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 1.3e-08 62.4 50 60.0
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.3e-08 62.4 52 57.7
Hma1.2p1_0135F.1_g061800 Hydrangea macrophylla HOM05D000399 ORTHO05D010012 1.3e-08 62.4 46 60.9
PGR031G2642 Punica granatum HOM05D000399 ORTHO05D010012 1.3e-08 62.4 54 55.6
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 1.6e-08 62.0 50 54.0
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 2.2e-08 61.6 57 59.6
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 2.2e-08 61.6 50 58.0
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 2.2e-08 61.6 50 58.0
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 2.2e-08 61.6 48 58.3
THA.LOC104812446 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 2.2e-08 61.6 56 50.0
Cpa.g.sc12.176 Carica papaya HOM05D000399 ORTHO05D010012 2.8e-08 61.2 55 58.2
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 2.8e-08 61.2 50 58.0
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 2.8e-08 61.2 54 53.7
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 3.7e-08 60.8 50 56.0
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 4.8e-08 60.5 50 50.0
Thhalv10019137m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 4.8e-08 60.5 49 61.2
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 4.8e-08 60.5 50 58.0
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 4.8e-08 60.5 50 56.0
BcaB05g25237 Brassica carinata HOM05D000399 ORTHO05D010012 6.3e-08 60.1 47 59.6
CARHR073870 Cardamine hirsuta HOM05D000399 ORTHO05D010012 6.3e-08 60.1 49 61.2
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 6.3e-08 60.1 52 53.8
Carub.0002s2691 Capsella rubella HOM05D000399 ORTHO05D010012 8.2e-08 59.7 46 63.0
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 8.2e-08 59.7 51 49.0
Thhalv10009652m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 8.2e-08 59.7 54 55.6
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 8.2e-08 59.7 50 56.0
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 8.2e-08 59.7 50 56.0
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 1.1e-07 59.3 50 58.0
Sp5g35110 Schrenkiella parvula HOM05D000399 ORTHO05D010012 1.1e-07 59.3 47 61.7
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 1.1e-07 59.3 50 54.0
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 1.1e-07 59.3 50 58.0
BolC6t40403H Brassica oleracea HOM05D000134 ORTHO05D002396 1.4e-07 58.9 48 58.3
Eucgr.J03093 Eucalyptus grandis HOM05D000399 ORTHO05D010012 1.4e-07 58.9 52 55.8
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 1.4e-07 58.9 50 60.0
Aa31LG4G930 Aethionema arabicum HOM05D000399 ORTHO05D010012 1.8e-07 58.5 46 60.9
ECA232G1568 Erigeron canadensis HOM05D000399 ORTHO05D010012 1.8e-07 58.5 57 49.1
AL2G40790 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 2.4e-07 58.2 63 50.8
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 3.1e-07 57.8 50 56.0
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 6.9e-07 56.6 50 50.0
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 6.9e-07 56.6 50 50.0
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 6.9e-07 56.6 50 52.0
Zm00001eb312740 Zea mays HOM05D000399 ORTHO05D010012 6.9e-07 56.6 49 53.1
Aa31LG7G440 Aethionema arabicum HOM05D000399 ORTHO05D010012 9.0e-07 56.2 54 51.9
Carub.0001s1565 Capsella rubella HOM05D000399 ORTHO05D010012 9.0e-07 56.2 52 50.0
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 9.0e-07 56.2 50 52.0
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 9.0e-07 56.2 50 50.0
AL1G28000 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 1.2e-06 55.8 54 51.9
Actinidia18233 Actinidia chinensis HOM05D000399 ORTHO05D010012 1.5e-06 55.5 49 57.1
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.5e-06 55.5 50 58.0
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.5e-06 55.5 50 54.0
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 2.0e-06 55.1 44 61.4
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 2.0e-06 55.1 50 54.0
vmacro19037 Vaccinium macrocarpon HOM05D000399 ORTHO05D010012 2.0e-06 55.1 45 60.0
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 2.0e-06 55.1 50 48.0
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 2.6e-06 54.7 50 56.0
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.6e-06 54.7 50 58.0
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 2.6e-06 54.7 50 50.0
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 3.4e-06 54.3 56 48.2
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.4e-06 54.3 54 50.0
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.4e-06 54.3 54 50.0
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 3.4e-06 54.3 50 48.0
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 3.4e-06 54.3 51 49.0
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 4.5e-06 53.9 50 50.0
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 4.5e-06 53.9 50 46.0
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 4.5e-06 53.9 50 56.0
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 4.5e-06 53.9 52 55.8
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 4.5e-06 53.9 52 55.8
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.9e-06 53.5 50 52.0
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 5.9e-06 53.5 50 54.0
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 5.9e-06 53.5 42 61.9
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 5.9e-06 53.5 54 46.3
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 7.7e-06 53.1 50 50.0
A06p11910 Brassica napus HOM05D002847 ORTHO05D003155 7.7e-06 53.1 50 56.0
C05p14090 Brassica napus HOM05D002847 ORTHO05D003155 7.7e-06 53.1 45 60.0
BolC5t30140H Brassica oleracea HOM05D002847 ORTHO05D003155 7.7e-06 53.1 45 60.0
BraA06t24361Z Brassica rapa HOM05D002847 ORTHO05D003155 7.7e-06 53.1 50 56.0
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 7.7e-06 53.1 50 52.0
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 7.7e-06 53.1 50 52.0
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 7.7e-06 53.1 50 52.0
Os09g0416500 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D010012 7.7e-06 53.1 50 48.0
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 7.7e-06 53.1 57 47.4
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 7.7e-06 53.1 62 45.2
Sp1g14150 Schrenkiella parvula HOM05D000399 ORTHO05D010012 1.0e-05 52.8 53 49.1


User provided reference genes

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