Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 5.3e-232 807.4 420 100.0
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.0e-223 778.9 420 97.4
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.1e-216 755.0 419 93.8
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 7.7e-215 750.4 417 93.5
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 2.2e-214 748.8 419 92.8
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 1.1e-213 746.5 419 92.6
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 1.5e-210 736.1 420 91.4
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 9.8e-194 680.2 419 84.0
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 3.1e-192 675.2 419 83.1
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 1.3e-190 669.8 420 81.7
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 1.7e-190 669.5 419 82.1
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 6.5e-190 667.5 417 83.0
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 4.2e-189 664.8 419 83.3
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 5.5e-189 664.5 420 80.7
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.6e-188 662.9 420 80.7
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 2.8e-188 662.1 419 81.1
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 8.0e-188 660.6 420 80.5
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 1.4e-187 659.8 420 80.7
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 3.0e-187 658.7 420 80.7
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 4.0e-187 658.3 418 80.9
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 5.2e-187 657.9 420 79.8
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 6.8e-187 657.5 420 80.2
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 2.6e-186 655.6 416 80.5
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 5.7e-186 654.4 420 79.5
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.3e-185 653.3 422 80.3
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 1.3e-185 653.3 420 80.0
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 1.7e-185 652.9 420 79.8
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 2.2e-185 652.5 420 79.8
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 2.2e-185 652.5 451 75.6
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 2.8e-185 652.1 420 80.7
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 2.8e-185 652.1 415 80.5
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 6.3e-185 651.0 420 78.6
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 1.4e-184 649.8 420 79.5
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 2.4e-184 649.0 419 79.2
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 2.4e-184 649.0 415 80.7
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 3.5e-183 645.2 420 78.1
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 3.5e-183 645.2 420 78.8
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 5.9e-183 644.4 420 78.3
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 5.9e-183 644.4 420 78.3
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 7.8e-183 644.0 417 79.6
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 1.0e-182 643.7 417 78.9
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 3.8e-182 641.7 419 78.5
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.1e-181 640.2 420 78.1
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.5e-181 639.8 420 77.6
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 3.3e-181 638.6 420 77.9
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 3.3e-181 638.6 420 77.6
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 5.6e-181 637.9 418 77.0
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 7.3e-181 637.5 420 77.6
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 2.1e-180 636.0 422 77.7
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 2.8e-180 635.6 420 76.7
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.0e-179 633.6 420 76.9
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 1.4e-179 633.3 420 77.4
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 2.3e-179 632.5 420 78.1
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 3.0e-179 632.1 420 76.9
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 6.8e-179 630.9 415 77.8
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 1.5e-178 629.8 421 77.2
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 2.0e-178 629.4 435 75.9
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 4.4e-178 628.2 420 77.1
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 7.5e-178 627.5 420 76.0
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 9.8e-178 627.1 420 75.7
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.3e-177 626.7 420 76.7
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 1.7e-177 626.3 420 76.7
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 1.7e-177 626.3 420 76.9
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 1.7e-177 626.3 420 76.7
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 1.7e-177 626.3 420 77.4
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.7e-177 626.3 420 76.7
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.9e-177 625.5 420 75.7
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 6.4e-177 624.4 420 76.7
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 6.4e-177 624.4 420 75.7
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 1.1e-176 623.6 420 76.4
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.4e-176 623.2 420 76.2
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.8e-176 622.9 420 76.7
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 1.6e-175 619.8 420 76.2
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 2.5e-173 612.5 421 75.5
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 3.3e-173 612.1 432 74.3
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 3.3e-173 612.1 432 74.3
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 5.6e-173 611.3 432 74.1
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 7.3e-173 610.9 420 74.3
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 2.8e-172 609.0 420 74.5
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 6.2e-172 607.8 415 76.6
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 2.3e-171 605.9 417 75.8
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 9.8e-170 600.5 420 74.8
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.2e-167 593.6 444 71.4
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 2.7e-167 592.4 421 72.2
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 6.0e-167 591.3 419 69.7
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.3e-166 590.1 420 72.9
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 7.3e-165 584.3 421 71.3
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 7.3e-165 584.3 421 71.0
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 3.6e-164 582.0 377 79.3
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.1e-163 580.5 381 78.2
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 6.8e-163 577.8 412 73.5
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 1.1e-160 570.5 422 71.6
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.9e-157 559.7 416 68.3
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 6.8e-155 551.2 422 68.7
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 6.8e-155 551.2 377 77.5
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 5.8e-154 548.1 418 70.6
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 3.2e-152 542.3 415 67.0
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 5.4e-152 541.6 420 68.3
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 6.0e-151 538.1 329 83.9
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 4.2e-144 515.4 423 66.0
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.5e-141 506.9 406 63.5
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 1.5e-141 506.9 411 60.6
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 3.6e-140 502.3 491 59.1
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.1e-139 500.7 417 66.2
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 1.4e-136 490.3 418 59.8
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 5.3e-131 471.9 309 77.7
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 2.6e-130 469.5 296 79.7
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 8.4e-129 464.5 287 82.2
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.5e-128 461.8 287 81.9
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 4.0e-123 445.7 263 86.7
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 2.9e-113 412.9 320 67.8
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 4.3e-109 399.1 262 76.0
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.3e-108 397.5 285 70.2
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 2.3e-102 376.7 313 64.5
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.7e-97 360.5 290 66.6
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-96 357.1 301 65.1
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 5.2e-94 349.0 342 52.0
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 2.4e-83 313.5 200 82.0
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 7.0e-83 312.0 179 91.1
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 3.8e-81 306.2 197 80.7
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.9e-72 277.3 244 60.7
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 1.2e-71 274.6 185 76.2
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.0e-67 258.8 205 65.4
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 2.4e-59 233.8 404 35.6
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.1e-59 233.0 210 61.4
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 9.5e-56 221.9 324 37.3
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 8.0e-55 218.8 220 55.0
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.1e-54 218.4 305 40.7
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.4e-53 213.4 146 76.0
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 3.7e-52 209.9 121 84.3
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.6e-47 194.5 132 75.0
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 8.3e-44 182.2 102 87.3
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.7e-42 177.2 198 55.1
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-37 161.4 161 57.1
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.9e-37 158.7 177 53.7
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.9e-35 154.5 83 89.2
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.3e-33 147.5 107 66.4
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 1.6e-31 141.4 420 30.0
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 3.6e-31 140.2 114 62.3
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 6.9e-30 136.0 80 80.0
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.3e-23 115.2 121 57.9
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 1.4e-22 111.7 153 47.1
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.5e-16 91.7 51 86.3
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 2.8e-15 87.4 133 41.4
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 4.8e-15 86.7 105 52.4
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 2.0e-13 81.3 143 42.0
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 1.3e-12 78.6 54 79.6
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.1e-11 75.5 55 70.9
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 1.4e-11 75.1 146 40.4
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.2e-11 73.6 50 72.0
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 4.6e-10 70.1 62 62.9
Solyc12g070150.1 Solanum lycopersicum HOM05D004528 ORTHO05D005815 3.9e-09 67.0 43 81.4
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 6.7e-09 66.2 38 84.2
Cfa025229 Carpinus fangiana HOM05D004528 ORTHO05D005815 9.6e-08 62.4 279 24.4


User provided reference genes

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