Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 8.6e-171 603.6 311 100.0
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.0e-163 578.6 311 97.1
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.3e-155 552.4 311 91.3
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 6.6e-155 550.8 311 91.0
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 2.5e-154 548.9 311 91.0
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 2.8e-153 545.4 311 90.4
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 5.8e-151 537.7 310 90.6
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 9.3e-133 477.2 311 79.1
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.1e-132 476.1 313 82.4
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.0e-127 459.5 311 77.2
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 2.2e-126 456.1 313 76.0
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 1.9e-125 453.0 311 75.6
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 3.2e-125 452.2 311 75.2
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 1.6e-124 449.9 316 75.0
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 2.7e-124 449.1 311 75.9
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 6.0e-124 448.0 316 74.7
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 6.0e-124 448.0 313 76.7
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 1.0e-123 447.2 311 75.2
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 1.8e-123 446.4 316 74.7
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 3.0e-123 445.7 316 74.1
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 3.9e-123 445.3 314 76.1
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 5.1e-123 444.9 311 74.3
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 3.7e-121 438.7 312 74.4
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 8.2e-121 437.6 317 72.9
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 8.2e-121 437.6 316 74.1
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 1.4e-120 436.8 309 73.1
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 1.8e-120 436.4 311 74.3
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 4.0e-120 435.3 311 75.9
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 5.3e-120 434.9 310 74.5
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 6.9e-120 434.5 315 74.0
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 1.5e-119 433.3 311 72.3
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.5e-119 433.3 313 73.2
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 2.0e-119 433.0 316 72.5
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 2.6e-119 432.6 309 73.8
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 4.5e-119 431.8 311 74.0
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 5.8e-119 431.4 314 72.0
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 5.8e-119 431.4 311 74.9
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.3e-118 430.3 312 74.0
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.2e-118 429.5 314 72.3
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.2e-118 429.5 312 73.4
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 2.2e-118 429.5 312 73.4
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.9e-118 429.1 314 73.2
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 2.9e-118 429.1 314 73.2
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 3.8e-118 428.7 311 71.1
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 4.9e-118 428.3 318 72.6
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 4.9e-118 428.3 311 73.3
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 2.5e-117 426.0 319 71.8
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 5.5e-117 424.9 311 73.0
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 1.2e-116 423.7 311 72.7
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 2.7e-116 422.5 312 72.1
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 2.7e-116 422.5 312 71.8
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 3.5e-116 422.2 311 73.0
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 6.1e-116 421.4 315 71.4
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 7.9e-116 421.0 322 70.2
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 3.0e-115 419.1 316 71.5
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 3.0e-115 419.1 310 71.6
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 3.0e-115 419.1 310 71.6
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 6.7e-115 417.9 322 68.0
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 6.7e-115 417.9 322 68.0
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 1.1e-114 417.2 318 71.4
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.5e-114 416.8 311 71.4
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 1.9e-114 416.4 312 71.2
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 3.3e-114 415.6 322 67.7
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 4.3e-114 415.2 353 64.6
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 4.3e-114 415.2 315 70.8
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 7.4e-114 414.5 323 68.7
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.6e-113 413.3 313 69.6
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 4.8e-113 411.8 319 67.7
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 8.2e-113 411.0 311 70.4
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 1.1e-112 410.6 313 69.0
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 1.4e-112 410.2 312 68.9
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 1.5e-111 406.8 312 68.3
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 2.6e-111 406.0 311 68.8
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 3.4e-111 405.6 312 67.3
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 4.5e-111 405.2 312 69.6
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 4.5e-111 405.2 315 68.6
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 2.9e-110 402.5 351 65.0
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 2.9e-110 402.5 312 68.9
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 3.8e-110 402.1 320 65.9
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 5.0e-110 401.7 314 69.1
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 5.0e-110 401.7 315 68.3
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 1.1e-109 400.6 311 69.1
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 1.1e-109 400.6 311 69.1
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 1.1e-109 400.6 311 69.1
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.4e-109 400.2 311 69.5
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 1.9e-109 399.8 311 68.5
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 2.5e-109 399.4 311 68.5
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 2.5e-109 399.4 311 68.5
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 4.2e-109 398.7 311 68.2
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 4.2e-109 398.7 273 78.8
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 7.2e-109 397.9 313 68.7
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 9.4e-109 397.5 316 66.8
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 2.1e-108 396.4 314 66.9
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 3.0e-107 392.5 314 68.8
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 8.2e-105 384.4 334 64.4
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 1.4e-104 383.6 291 71.1
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 1.5e-103 380.2 312 66.7
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.1e-101 374.0 254 77.6
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 5.5e-101 371.7 224 83.0
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 3.6e-100 369.0 289 68.5
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 6.1e-100 368.2 340 60.6
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 6.7e-99 364.8 339 60.2
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 1.5e-98 363.6 270 73.7
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 3.3e-98 362.5 347 59.1
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 7.0e-96 354.8 268 70.9
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.0e-94 350.9 317 63.1
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 1.7e-94 350.1 203 86.2
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.5e-93 347.1 265 71.7
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 3.6e-92 342.4 310 58.4
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 8.0e-92 341.3 322 57.8
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 1.0e-91 340.9 211 81.5
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 2.2e-89 333.2 376 54.0
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 5.0e-86 322.0 274 63.9
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 5.5e-85 318.5 311 59.2
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 7.2e-85 318.2 311 56.3
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 3.0e-83 312.8 235 69.4
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 5.3e-80 302.0 185 82.2
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 1.6e-79 300.4 314 54.8
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 1.1e-77 294.3 249 70.3
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 2.3e-75 286.6 200 79.0
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 3.0e-67 259.6 191 78.5
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 1.5e-66 257.3 414 42.8
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 2.4e-64 250.0 294 51.0
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 8.6e-62 241.5 313 52.1
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 1.8e-51 207.2 189 59.3
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 3.4e-50 203.0 278 52.2
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 6.4e-49 198.7 117 87.2
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 3.2e-48 196.4 226 47.8
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 6.8e-43 178.7 241 44.4
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 5.4e-40 169.1 120 73.3
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 9.2e-40 168.3 208 47.1
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.2e-39 167.9 192 51.0
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.7e-38 164.1 95 86.3
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 3.6e-36 156.4 96 85.4
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 3.1e-35 153.3 122 68.9
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 6.8e-35 152.1 126 64.3
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 6.8e-35 152.1 126 64.3
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 4.4e-34 149.4 93 84.9
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.6e-31 139.4 80 90.0
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.6e-28 131.0 198 42.9
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 2.4e-24 117.1 242 38.0
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 6.0e-23 112.5 99 63.6
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 3.9e-22 109.8 149 45.0
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 6.9e-19 99.0 92 63.0
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 9.9e-18 95.1 60 83.3
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 3.4e-10 70.1 52 59.6
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 4.2e-08 63.2 43 72.1
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 5.5e-08 62.8 41 65.9
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 3.5e-07 60.1 62 56.5
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 7.9e-07 58.9 67 41.8
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 3.0e-06 57.0 128 34.4
Potri.004G176100 Populus trichocarpa HOM05D002972 ORTHO05D002272 3.9e-06 56.6 42 54.8
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 3.9e-06 56.6 57 59.6
COL.COLO4_17354 Corchorus olitorius HOM05D002972 ORTHO05D002272 8.7e-06 55.5 67 40.3


User provided reference genes

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