Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.3e-152 543.1 289 100.0
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 8.1e-139 497.3 289 93.1
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 3.1e-130 468.8 287 81.9
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 4.0e-122 441.8 289 77.2
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 5.3e-122 441.4 289 77.5
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 6.9e-122 441.0 289 77.9
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 2.4e-119 432.6 289 77.2
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 3.4e-97 359.0 250 69.2
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 5.8e-97 358.2 285 62.8
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 6.5e-96 354.8 289 62.3
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 6.0e-94 348.2 290 64.5
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 5.1e-93 345.1 290 64.1
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 6.7e-93 344.7 286 62.6
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 4.3e-92 342.0 287 62.7
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 9.7e-92 340.9 242 67.8
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 1.3e-91 340.5 287 61.7
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.6e-91 340.1 287 62.7
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 3.7e-91 339.0 286 61.9
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 1.4e-90 337.0 285 62.5
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 9.0e-90 334.3 294 59.9
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 4.5e-89 332.0 294 58.8
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 5.9e-89 331.6 237 66.7
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 7.7e-89 331.3 293 60.1
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 1.3e-88 330.5 285 61.1
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 1.7e-88 330.1 287 62.7
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 1.9e-87 326.6 246 66.3
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 2.5e-87 326.2 240 65.8
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 9.4e-87 324.3 295 57.6
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 1.2e-86 323.9 248 66.5
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 2.1e-86 323.2 241 66.8
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 2.7e-86 322.8 241 66.8
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 7.9e-86 321.2 241 65.1
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 7.9e-86 321.2 289 58.8
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 1.4e-85 320.5 285 58.2
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 5.1e-85 318.5 294 58.8
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 8.8e-85 317.8 293 57.3
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 1.1e-84 317.4 285 58.2
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 1.1e-84 317.4 254 63.8
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.5e-84 317.0 293 57.3
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 1.3e-83 313.9 221 68.8
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 1.3e-83 313.9 251 61.0
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 3.1e-82 309.3 331 51.4
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 6.9e-82 308.1 291 58.1
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 6.9e-82 308.1 285 57.2
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.5e-81 307.0 243 63.8
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 2.6e-81 306.2 330 50.9
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.6e-81 306.2 239 65.7
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.6e-81 306.2 239 65.7
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 4.5e-81 305.4 239 65.7
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 1.0e-80 304.3 220 67.7
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 2.2e-80 303.1 220 67.3
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 3.8e-80 302.4 194 77.3
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 6.5e-80 301.6 284 57.7
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 2.1e-78 296.6 311 52.4
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 4.7e-78 295.4 242 64.5
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 7.9e-78 294.7 230 60.9
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.4e-77 293.9 238 63.4
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 3.9e-77 292.4 290 53.4
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 5.1e-77 292.0 244 60.2
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 6.7e-77 291.6 230 62.6
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 8.8e-77 291.2 218 67.4
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 8.8e-77 291.2 241 60.6
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 1.1e-76 290.8 218 67.0
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 1.5e-76 290.4 287 55.1
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 3.3e-76 289.3 241 61.8
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 3.3e-76 289.3 241 61.8
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 3.3e-76 289.3 291 52.6
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 3.3e-76 289.3 245 58.4
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 3.3e-76 289.3 245 58.4
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 5.7e-76 288.5 221 63.3
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 7.4e-76 288.1 230 63.9
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 1.3e-75 287.3 218 66.5
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 1.3e-75 287.3 219 66.2
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 1.3e-75 287.3 218 66.1
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 1.7e-75 287.0 218 67.0
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 2.8e-75 286.2 242 60.3
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 3.7e-75 285.8 242 60.7
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 3.7e-75 285.8 230 63.5
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 3.7e-75 285.8 230 60.4
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 4.8e-75 285.4 243 60.5
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 4.8e-75 285.4 222 64.9
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 4.8e-75 285.4 243 60.5
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 4.8e-75 285.4 240 58.3
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 4.8e-75 285.4 240 58.3
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 8.2e-75 284.6 249 57.0
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 1.1e-74 284.3 219 65.3
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 1.1e-74 284.3 219 65.3
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 1.1e-74 284.3 249 57.0
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 1.4e-74 283.9 219 64.4
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 1.8e-74 283.5 241 58.5
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 2.4e-74 283.1 240 57.1
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 9.1e-74 281.2 247 57.5
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 2.0e-73 280.0 296 51.4
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 3.5e-73 279.3 244 58.6
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 7.7e-73 278.1 218 61.9
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 7.7e-73 278.1 250 56.4
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 2.2e-72 276.6 242 56.6
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 8.5e-72 274.6 194 69.1
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 1.6e-70 270.4 295 52.2
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 1.6e-70 270.4 293 52.2
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 2.1e-70 270.0 251 55.8
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 1.8e-69 266.9 242 56.6
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 1.3e-67 260.8 255 56.5
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 2.2e-67 260.0 168 76.2
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 6.3e-67 258.5 292 50.0
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 1.1e-66 257.7 251 51.8
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 4.5e-65 252.3 171 72.5
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 1.5e-63 247.3 291 48.1
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 1.4e-61 240.7 199 61.3
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 8.3e-59 231.5 167 70.7
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 2.5e-55 219.9 186 60.2
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 1.8e-50 203.8 205 47.8
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 3.5e-49 199.5 199 54.3
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 3.5e-49 199.5 175 58.3
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 1.0e-45 188.0 325 36.9
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 2.3e-45 186.8 192 55.7
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 5.2e-45 185.7 187 56.7
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 2.6e-44 183.3 237 40.1
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 5.7e-44 182.2 268 44.0
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 2.4e-42 176.8 144 63.9
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 5.4e-42 175.6 185 56.2
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 1.6e-41 174.1 185 56.2
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.6e-41 174.1 191 51.3
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 7.8e-41 171.8 242 40.1
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 1.1e-39 167.9 194 50.5
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 2.5e-39 166.8 191 46.1
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 4.7e-38 162.5 200 44.0
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 1.7e-35 154.1 108 65.7
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.6e-33 147.5 106 67.9
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 7.8e-33 145.2 365 31.0
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 1.5e-31 141.0 220 40.5
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 5.6e-31 139.0 128 55.5
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.8e-30 136.7 129 51.9
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 8.1e-22 108.6 130 46.9
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 4.4e-20 102.8 119 48.7
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 2.2e-19 100.5 229 31.0
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 5.8e-12 75.9 155 32.9
Cfa026181 Carpinus fangiana HOM05D002398 ORTHO05D000038 1.3e-11 74.7 229 23.6
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 1.3e-08 64.7 157 29.9
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 3.0e-08 63.5 45 64.4
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 6.6e-08 62.4 75 37.3


User provided reference genes

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