Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 7.6e-89 330.5 169 100.0
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.8e-83 312.0 172 95.9
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.3e-72 276.6 164 90.9
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 7.7e-65 250.8 149 85.2
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 9.1e-58 227.3 150 80.0
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 2.2e-56 222.6 147 79.6
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 3.2e-55 218.8 165 71.5
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.6e-49 199.9 164 68.3
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 6.8e-45 184.5 138 66.7
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 8.8e-45 184.1 144 66.7
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 1.2e-44 183.7 149 62.4
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 2.8e-43 179.1 141 63.8
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 4.8e-43 178.3 146 63.0
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 3.1e-42 175.6 146 62.3
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 9.1e-42 174.1 150 63.3
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 2.7e-41 172.6 142 62.0
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 7.7e-41 171.0 149 59.7
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 7.7e-41 171.0 146 59.6
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 1.0e-40 170.6 152 59.9
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.7e-40 169.9 139 61.9
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.7e-40 169.9 148 58.1
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 1.5e-39 166.8 147 63.9
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 1.9e-39 166.4 150 63.3
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 2.5e-39 166.0 153 57.5
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 5.5e-39 164.9 139 64.0
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 7.2e-39 164.5 147 59.9
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 2.8e-38 162.5 130 66.2
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.6e-38 162.2 149 56.4
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 3.6e-38 162.2 116 71.6
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 1.0e-37 160.6 152 58.6
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 1.8e-37 159.8 132 63.6
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.8e-37 159.8 128 64.1
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 2.3e-37 159.5 148 58.1
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 3.0e-37 159.1 130 59.2
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 3.0e-37 159.1 147 59.2
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 4.0e-37 158.7 151 59.6
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 4.0e-37 158.7 148 59.5
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 5.7e-36 154.8 145 59.3
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 9.8e-36 154.1 149 56.4
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 9.8e-36 154.1 149 58.4
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.3e-35 153.7 146 53.4
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 1.7e-35 153.3 149 58.4
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 1.7e-35 153.3 150 56.0
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.2e-35 152.9 144 57.6
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 2.8e-35 152.5 143 55.9
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 3.7e-35 152.1 133 60.9
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 4.9e-35 151.8 147 57.1
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 6.3e-35 151.4 144 59.7
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 8.3e-35 151.0 155 57.4
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 1.1e-34 150.6 136 60.3
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.1e-34 150.6 125 61.6
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.1e-34 150.6 150 57.3
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.1e-34 150.6 143 56.6
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 1.4e-34 150.2 136 61.0
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 1.8e-34 149.8 147 54.4
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 2.4e-34 149.4 140 58.6
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 2.4e-34 149.4 147 56.5
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 2.4e-34 149.4 129 61.2
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 3.1e-34 149.1 141 58.9
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 7.0e-34 147.9 145 55.9
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 9.2e-34 147.5 120 62.5
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 1.6e-33 146.7 139 57.6
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.6e-33 146.7 126 60.3
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 2.0e-33 146.4 154 53.9
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 3.5e-33 145.6 130 59.2
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 4.5e-33 145.2 144 54.9
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 4.5e-33 145.2 143 58.0
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 5.9e-33 144.8 163 53.4
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 7.8e-33 144.4 145 57.9
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.3e-32 143.7 139 55.4
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 2.9e-32 142.5 138 52.9
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 5.0e-32 141.7 136 55.1
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 1.5e-31 140.2 128 57.8
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 9.5e-31 137.5 137 56.2
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 9.5e-31 137.5 130 50.8
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 2.1e-30 136.3 147 52.4
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 2.8e-30 136.0 137 57.7
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 4.7e-30 135.2 136 53.7
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 8.0e-30 134.4 146 47.9
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 1.4e-29 133.7 132 53.8
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.4e-29 133.7 89 74.2
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 1.8e-29 133.3 94 69.1
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 3.1e-29 132.5 149 52.3
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 3.1e-29 132.5 149 52.3
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 3.1e-29 132.5 150 51.3
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 8.9e-29 131.0 160 52.5
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.5e-28 130.2 138 54.3
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 2.6e-28 129.4 143 54.5
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 3.4e-28 129.0 148 55.4
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 3.4e-28 129.0 145 51.7
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 3.4e-28 129.0 89 70.8
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 7.5e-28 127.9 148 54.7
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 7.5e-28 127.9 145 50.3
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 7.5e-28 127.9 145 50.3
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 7.5e-28 127.9 146 50.7
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 9.8e-28 127.5 143 53.1
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 9.8e-28 127.5 141 51.1
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 9.8e-28 127.5 164 45.7
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 1.3e-27 127.1 148 54.1
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.3e-27 127.1 139 51.1
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.7e-27 126.7 147 54.4
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 2.9e-27 125.9 144 51.4
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 2.9e-27 125.9 89 68.5
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 2.9e-27 125.9 152 46.7
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 4.9e-27 125.2 146 51.4
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 8.3e-27 124.4 104 55.8
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.1e-26 124.0 94 63.8
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.1e-26 124.0 128 52.3
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 1.4e-26 123.6 130 50.0
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 4.1e-26 122.1 149 45.6
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 7.0e-26 121.3 147 50.3
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 7.0e-26 121.3 147 50.3
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 9.2e-26 120.9 131 50.4
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 9.2e-26 120.9 132 52.3
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 9.2e-26 120.9 132 52.3
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 7.8e-25 117.9 116 54.3
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.0e-24 117.5 83 67.5
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.3e-24 117.1 81 69.1
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 3.0e-24 115.9 97 57.7
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 3.9e-24 115.5 139 53.2
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 3.9e-24 115.5 139 53.2
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 3.9e-24 115.5 139 53.2
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 1.1e-23 114.0 121 54.5
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 1.1e-23 114.0 94 59.6
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 4.3e-23 112.1 105 58.1
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 1.6e-22 110.2 153 45.8
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 4.7e-22 108.6 92 59.8
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 1.4e-21 107.1 148 40.5
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 4.0e-21 105.5 138 42.0
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 5.2e-21 105.1 146 43.2
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 6.8e-21 104.8 132 51.5
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 8.9e-21 104.4 133 47.4
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 1.5e-20 103.6 146 43.2
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 2.0e-20 103.2 146 43.2
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 2.6e-20 102.8 152 44.1
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.3e-19 100.5 148 41.9
Solyc11g007810.3 Solanum lycopersicum HOM05D004569 ORTHO05D005333 1.3e-19 100.5 100 59.0
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 2.2e-19 99.8 126 42.9
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 2.4e-18 96.3 120 50.0
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 5.4e-18 95.1 147 42.2
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 3.5e-17 92.4 66 65.2
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 6.0e-17 91.7 93 49.5
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 7.8e-17 91.3 165 37.6
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.7e-16 90.1 119 44.5
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 3.6e-14 82.4 132 37.9
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 1.4e-13 80.5 138 38.4
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 8.9e-13 77.8 63 58.7
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 1.2e-12 77.4 98 49.0
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 3.4e-12 75.9 145 35.9
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 5.8e-12 75.1 146 37.0
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 2.9e-11 72.8 48 72.9
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 1.1e-10 70.9 90 44.4
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 3.2e-10 69.3 97 41.2
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 2.7e-09 66.2 83 48.2
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 3.0e-08 62.8 46 65.2
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 6.6e-08 61.6 71 46.5
Hma1.2p1_0549F.1_g176960 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.6e-06 57.0 40 72.5


User provided reference genes

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