Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004377g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 2.3e-162 575.5 280 100.0
Nitab4.5_0002396g0050 Nicotiana tabacum HOM05D003562 ORTHO05D004074 2.2e-96 356.3 272 71.0
Nitab4.5_0002396g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 4.8e-88 328.6 227 71.8
PGSC0003DMG400042505 Solanum tuberosum HOM05D003562 ORTHO05D004074 7.7e-86 321.2 224 70.1
PGSC0003DMG400006062 Solanum tuberosum HOM05D003562 ORTHO05D004074 5.0e-85 318.5 224 70.1
Solyc11g005230.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.1e-84 317.4 224 69.2
Sopen11g001240 Solanum pennellii HOM05D003562 ORTHO05D004074 1.4e-84 317.0 224 69.2
Peaxi162Scf00125g00231 Petunia axillaris HOM05D003562 ORTHO05D004074 6.7e-82 308.1 212 70.3
Nitab4.5_0004377g0020 Nicotiana tabacum HOM05D003562 ORTHO05D004074 2.0e-81 306.6 214 72.0
PGSC0003DMG400039163 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.8e-79 300.1 224 67.0
CAN.G557.9 Capsicum annuum HOM05D003562 ORTHO05D004074 2.2e-77 293.1 208 69.7
Solyc11g005240.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 8.5e-77 291.2 220 69.1
Sopen11g001250 Solanum pennellii HOM05D003562 ORTHO05D004074 8.5e-77 291.2 220 69.1
PGSC0003DMG400006063 Solanum tuberosum HOM05D003562 ORTHO05D004074 7.2e-76 288.1 220 69.1
Peaxi162Scf00025g02824 Petunia axillaris HOM05D003562 ORTHO05D004074 1.0e-74 284.3 213 66.7
CAN.G557.10 Capsicum annuum HOM05D003562 ORTHO05D004074 2.0e-73 280.0 224 63.8
Nitab4.5_0002396g0020 Nicotiana tabacum HOM05D003562 ORTHO05D004074 2.3e-50 203.4 127 77.2
Solyc06g005930.3 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.2e-43 181.0 210 45.7
vmacro18374 Vaccinium macrocarpon HOM05D000884 ORTHO05D002127 2.8e-43 179.9 239 38.9
QL06p011807 Quercus lobata HOM05D003562 ORTHO05D004074 8.9e-42 174.9 213 43.2
CAN.G341.6 Capsicum annuum HOM05D003562 ORTHO05D002248 3.4e-41 172.9 230 45.2
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 1.4e-39 167.5 222 41.4
Sopen11g001180 Solanum pennellii HOM05D003562 ORTHO05D004074 7.8e-38 161.8 200 47.5
Solyc11g005180.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.7e-37 160.6 170 51.2
Rhsim08G0039700 Rhododendron simsii HOM05D000884 ORTHO05D002127 2.3e-37 160.2 222 39.2
Dinv02658 Davidia involucrata HOM05D003562 ORTHO05D004074 2.9e-32 143.3 145 44.8
Thecc.07G145200 Theobroma cacao HOM05D003562 ORTHO05D004074 2.4e-31 140.2 273 34.8
Aqoxy1G00347 Aquilegia oxysepala HOM05D003562 ORTHO05D004074 8.6e-29 131.7 209 34.9
Thecc.07G145100 Theobroma cacao HOM05D003562 ORTHO05D004074 1.1e-28 131.3 112 54.5
arahy.Tifrunner.gnm1.ann1.T72YSL Arachis hypogaea HOM05D003562 ORTHO05D004074 9.5e-28 128.3 211 35.5
Nn2g14890 Nelumbo nucifera HOM05D003562 ORTHO05D004074 1.6e-27 127.5 213 35.2
Cpa.g.sc30.42 Carica papaya HOM05D003562 ORTHO05D004074 8.1e-27 125.2 217 34.1
Manes.04G160200 Manihot esculenta HOM05D003562 ORTHO05D004074 1.4e-26 124.4 212 35.8
Rhsim07G0066600 Rhododendron simsii HOM05D003562 ORTHO05D004074 1.8e-26 124.0 211 34.6
Dinv09273 Davidia involucrata HOM05D003562 ORTHO05D004074 3.1e-26 123.2 210 32.9
RhsimUnG0111400 Rhododendron simsii HOM05D003562 ORTHO05D004074 3.1e-26 123.2 211 34.6
MBI18_g45417_MAGBIO Magnolia biondii HOM05D003562 ORTHO05D004074 4.0e-26 122.9 158 38.6
vmacro13748 Vaccinium macrocarpon HOM05D003562 ORTHO05D004074 1.2e-25 121.3 211 34.1
CSS0045780 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 2.0e-25 120.6 209 34.4
Peaxi162Scf00025g00152 Petunia axillaris HOM05D003562 ORTHO05D004074 2.0e-25 120.6 208 34.1
TAR636G0244 Trochodendron aralioides HOM05D003562 ORTHO05D004074 2.0e-25 120.6 208 31.7
BcaB05g22520 Brassica carinata HOM05D003562 ORTHO05D004074 2.6e-25 120.2 211 33.6
CDE12G0865 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 2.6e-25 120.2 217 33.2
Thhalv10014282m.g Eutrema salsugineum HOM05D003562 ORTHO05D004074 2.6e-25 120.2 217 33.6
CSS0041933 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 3.4e-25 119.8 209 35.4
Solyc11g005260.2 Solanum lycopersicum HOM05D003562 ORTHO05D004074 3.4e-25 119.8 227 33.0
THA.LOC104807160 Tarenaya hassleriana HOM05D003562 ORTHO05D004074 3.4e-25 119.8 203 35.0
Potri.003G198000 Populus trichocarpa HOM05D003562 ORTHO05D004074 4.4e-25 119.4 211 34.6
Sp6g21260 Schrenkiella parvula HOM05D003562 ORTHO05D004074 5.8e-25 119.0 211 32.2
TAR636G1892 Trochodendron aralioides HOM05D003562 ORTHO05D004074 5.8e-25 119.0 207 32.9
BcaB08g36248 Brassica carinata HOM05D003562 ORTHO05D004074 7.6e-25 118.6 215 34.0
Lalb_Chr03g0032801 Lupinus albus HOM05D003562 ORTHO05D004074 7.6e-25 118.6 206 36.9
Potri.T125306 Populus trichocarpa HOM05D003562 ORTHO05D004074 7.6e-25 118.6 211 34.1
Sopen11g001270 Solanum pennellii HOM05D003562 ORTHO05D004074 7.6e-25 118.6 227 32.6
CDE01G0515 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 9.9e-25 118.2 207 32.9
Cc01_g07880 Coffea canephora HOM05D003562 ORTHO05D004074 1.3e-24 117.9 210 35.2
Glyma.11G154000 Glycine max HOM05D003562 ORTHO05D004074 1.3e-24 117.9 213 35.2
Nitab4.5_0010864g0010 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.3e-24 117.9 211 33.2
QL04p014940 Quercus lobata HOM05D003562 ORTHO05D004074 1.3e-24 117.9 200 37.0
CSS0019906 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 1.7e-24 117.5 209 34.0
Haze_03073 Corylus avellana HOM05D003562 ORTHO05D004074 1.7e-24 117.5 200 35.5
Medtr3g017470 Medicago truncatula HOM05D003562 ORTHO05D004074 1.7e-24 117.5 202 35.6
QL04p014579 Quercus lobata HOM05D003562 ORTHO05D004074 1.7e-24 117.5 200 37.0
Phvul.005G028600 Phaseolus vulgaris HOM05D003562 ORTHO05D004074 2.9e-24 116.7 209 34.9
TAR636G1695 Trochodendron aralioides HOM05D003562 ORTHO05D004074 2.9e-24 116.7 208 31.7
TAR636G2713 Trochodendron aralioides HOM05D003562 ORTHO05D004074 2.9e-24 116.7 208 31.2
Cfa010886 Carpinus fangiana HOM05D003562 ORTHO05D004074 3.7e-24 116.3 200 35.0
Lsat_1_v5_gn_6_15520 Lactuca sativa HOM05D003562 ORTHO05D004074 3.7e-24 116.3 209 35.4
Potri.001G026700 Populus trichocarpa HOM05D003562 ORTHO05D004074 3.7e-24 116.3 212 34.4
Prupe.7G009600 Prunus persica HOM05D003562 ORTHO05D004074 3.7e-24 116.3 200 35.0
CiPaw.13G012700 Carya illinoinensis HOM05D003562 ORTHO05D004074 4.9e-24 115.9 209 34.9
CAN.G1074.6 Capsicum annuum HOM05D003562 ORTHO05D004074 6.4e-24 115.5 208 34.1
Glyma.06G083300 Glycine max HOM05D003562 ORTHO05D004074 6.4e-24 115.5 213 34.7
Psat5g217800 Pisum sativum HOM05D003562 ORTHO05D004074 6.4e-24 115.5 201 37.3
Sabra03G0147400 Salix brachista HOM05D003562 ORTHO05D004074 6.4e-24 115.5 211 33.6
SalBow7G2199 Salvia bowleyana HOM05D003562 ORTHO05D004074 6.4e-24 115.5 212 32.1
CANSAT35G1715 Cannabis sativa HOM05D003562 ORTHO05D004074 8.4e-24 115.2 199 36.7
Cc00_g22970 Coffea canephora HOM05D003562 ORTHO05D004074 8.4e-24 115.2 201 36.3
DCAR_022850 Daucus carota HOM05D003562 ORTHO05D004074 8.4e-24 115.2 213 33.3
Hma1.2p1_1396F.1_g280630 Hydrangea macrophylla HOM05D003562 ORTHO05D004074 8.4e-24 115.2 200 36.0
TAR636G2742 Trochodendron aralioides HOM05D003562 ORTHO05D004074 8.4e-24 115.2 208 31.2
TPR.G17800 Trifolium pratense HOM05D003562 ORTHO05D004074 1.1e-23 114.8 200 35.5
TWI32G0119 Tripterygium wilfordii HOM05D003562 ORTHO05D004074 1.1e-23 114.8 212 34.4
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 1.4e-23 114.4 199 33.2
C02p12410 Brassica napus HOM05D003562 ORTHO05D004074 1.4e-23 114.4 199 33.2
Ca_27897_v3 Cicer arietinum L. HOM05D003562 ORTHO05D004074 1.9e-23 114.0 200 35.0
Duzib114G0768 Durio zibethinus HOM05D003562 ORTHO05D004074 2.4e-23 113.6 220 31.8
Gorai.011G213800 Gossypium raimondii HOM05D003562 ORTHO05D004074 2.4e-23 113.6 208 33.7
BcaC04g19758 Brassica carinata HOM05D003562 ORTHO05D004074 3.2e-23 113.2 211 29.9
C09p51940 Brassica napus HOM05D003562 ORTHO05D004074 3.2e-23 113.2 211 29.9
BolC9t58057H Brassica oleracea HOM05D003562 ORTHO05D004074 3.2e-23 113.2 211 29.9
CARHR273020 Cardamine hirsuta HOM05D003562 ORTHO05D004074 3.2e-23 113.2 201 32.8
Gohir.D10G190700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 3.2e-23 113.2 208 33.7
VMungo1080G1790 Vigna mungo HOM05D003562 ORTHO05D004074 5.4e-23 112.5 200 34.0
Gohir.D10G190150 Gossypium hirsutum HOM05D003562 ORTHO05D004074 7.1e-23 112.1 208 33.7
Gohir.D10G190200 Gossypium hirsutum HOM05D003562 ORTHO05D004074 7.1e-23 112.1 208 33.7
Nitab4.5_0000320g0220 Nicotiana tabacum HOM05D003562 ORTHO05D004074 7.1e-23 112.1 211 32.7
ClCG01G007760 Citrullus lanatus HOM05D003562 ORTHO05D004074 9.2e-23 111.7 200 34.0
Duzib128G0310 Durio zibethinus HOM05D003562 ORTHO05D004074 9.2e-23 111.7 208 33.2
Gohir.A10G183700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 9.2e-23 111.7 145 40.0
Lj8P275T68 Lonicera japonica HOM05D003562 ORTHO05D004074 9.2e-23 111.7 208 34.1
CiPaw.14G007100 Carya illinoinensis HOM05D003562 ORTHO05D004074 1.2e-22 111.3 209 33.5
BcaC03g14002 Brassica carinata HOM05D003562 ORTHO05D004074 1.6e-22 110.9 199 31.7
A02p07060 Brassica napus HOM05D003562 ORTHO05D004074 1.6e-22 110.9 199 31.2
BolC2t07341H Brassica oleracea HOM05D003562 ORTHO05D004074 1.6e-22 110.9 199 31.7
BraA02t05786Z Brassica rapa HOM05D003562 ORTHO05D004074 1.6e-22 110.9 199 31.2
MD06G1045900 Malus domestica HOM05D003562 ORTHO05D004074 1.6e-22 110.9 200 34.5
SHI01272 Sapria himalayana HOM05D003562 ORTHO05D004074 1.6e-22 110.9 204 34.3
A10p16750 Brassica napus HOM05D003562 ORTHO05D004074 2.1e-22 110.5 199 31.2
PSO384G3387 Papaver somniferum HOM05D003562 ORTHO05D004074 2.7e-22 110.2 211 32.2
MSTRG.16988 Avicennia marina HOM05D003562 ORTHO05D004074 3.5e-22 109.8 201 34.8
BraA10t43756Z Brassica rapa HOM05D003562 ORTHO05D004074 4.6e-22 109.4 206 34.0
Thecc.10G162500 Theobroma cacao HOM05D003562 ORTHO05D004074 6.0e-22 109.0 208 32.2
BcaB07g34157 Brassica carinata HOM05D003562 ORTHO05D004074 1.0e-21 108.2 201 33.3
Lj3g0004154 Lotus japonicus HOM05D003562 ORTHO05D004074 1.0e-21 108.2 200 34.5
MD02G1270100 Malus domestica HOM05D003562 ORTHO05D004074 1.0e-21 108.2 200 33.5
Peaxi162Scf00128g00115 Petunia axillaris HOM05D003562 ORTHO05D004074 1.0e-21 108.2 188 34.0
PGR142G2845 Punica granatum HOM05D003562 ORTHO05D004074 1.0e-21 108.2 199 33.7
Sc10g0004400 Simmondsia chinensis HOM05D003562 ORTHO05D004074 1.0e-21 108.2 204 33.3
ATR0763G113 Amborella trichopoda HOM05D003562 ORTHO05D004074 1.3e-21 107.8 211 32.7
AL8G36050 Arabidopsis lyrata HOM05D003562 ORTHO05D004074 1.3e-21 107.8 200 32.5
AT5G59560 Arabidopsis thaliana HOM05D003562 ORTHO05D004074 1.3e-21 107.8 200 31.5
COL.COLO4_07204 Corchorus olitorius HOM05D003562 ORTHO05D004074 1.3e-21 107.8 208 32.2
MELO3C005120.2 Cucumis melo HOM05D003562 ORTHO05D004074 1.7e-21 107.5 200 34.0
SGA_v2.0_scaffold71G23983 Striga asiatica HOM05D003562 ORTHO05D004074 1.7e-21 107.5 199 33.2
CsaV3_5G024840 Cucumis sativus L. HOM05D003562 ORTHO05D004074 2.3e-21 107.1 209 32.1
Sed0007359 Sechium edule HOM05D003562 ORTHO05D004074 2.3e-21 107.1 202 33.2
Ciclev10029023m.g Citrus clementina HOM05D003562 ORTHO05D004074 5.1e-21 105.9 209 31.6
Atru.chr12.1362 Acer truncatum HOM05D003562 ORTHO05D004074 1.5e-20 104.4 212 32.5
Carub.0008s2023 Capsella rubella HOM05D003562 ORTHO05D004074 1.9e-20 104.0 200 31.5
PSO339G2283 Papaver somniferum HOM05D003562 ORTHO05D004074 1.9e-20 104.0 213 31.0
HanXRQChr12g0359541 Helianthus annuus HOM05D003562 ORTHO05D004074 2.5e-20 103.6 211 31.8
FvH4_5g25300 Fragaria vesca HOM05D003562 ORTHO05D004074 4.3e-20 102.8 212 33.0
FAN18G1494 Fragaria x ananassa HOM05D003562 ORTHO05D004074 4.3e-20 102.8 212 33.0
Ah.04g155210 Amaranthus hybridus HOM05D003562 ORTHO05D004074 5.6e-20 102.4 201 33.8
Ah.04g155220 Amaranthus hybridus HOM05D003562 ORTHO05D004074 5.6e-20 102.4 201 33.8
FAN13G2751 Fragaria x ananassa HOM05D003562 ORTHO05D004074 5.6e-20 102.4 212 33.0
FAN04G2150 Fragaria x ananassa HOM05D003562 ORTHO05D004074 1.6e-19 100.9 145 39.3
Eucgr.G03239 Eucalyptus grandis HOM05D003562 ORTHO05D004074 2.1e-19 100.5 201 32.3
GSVIVG01037424001 Vitis vinifera HOM05D003562 ORTHO05D004074 2.1e-19 100.5 202 30.2
Migut.N01839 Erythranthe guttata HOM05D003562 ORTHO05D004074 3.6e-19 99.8 212 29.2
Actinidia06246 Actinidia chinensis HOM05D003562 ORTHO05D004074 6.2e-19 99.0 185 33.0
AUR62037195 Chenopodium quinoa HOM05D003562 ORTHO05D004074 1.1e-18 98.2 205 31.7
unitig_747.g21707 Utricularia gibba HOM05D003562 ORTHO05D004074 1.4e-18 97.8 201 30.8
ECA233G2618 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-18 97.4 192 31.2
PGSC0003DMG400006036 Solanum tuberosum HOM05D003562 ORTHO05D004074 3.1e-18 96.7 181 33.1
unitig_26.g9509 Utricularia gibba HOM05D003562 ORTHO05D004074 4.0e-18 96.3 183 30.1
Oeu015695.4 Olea europaea HOM05D003562 ORTHO05D004074 8.9e-18 95.1 145 35.9
HPP92_020694 Vanilla planifolia HOM05D003562 ORTHO05D004074 2.6e-17 93.6 116 38.8
HPP92_020796 Vanilla planifolia HOM05D003562 ORTHO05D004074 2.6e-17 93.6 116 38.8
HPP92_000641 Vanilla planifolia HOM05D003562 ORTHO05D004074 5.8e-17 92.4 214 29.4
BolC2t11811H Brassica oleracea HOM05D003562 ORTHO05D004074 2.9e-16 90.1 117 38.5
CANSAT11G2219 Cannabis sativa HOM05D003562 ORTHO05D004074 4.2e-15 86.3 154 33.8
CSS0043492 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 5.4e-15 85.9 206 31.1
Dinv33286 Davidia involucrata HOM05D003562 ORTHO05D004074 9.3e-15 85.1 61 54.1
Os05g0118000 Oryza sativa ssp. japonica HOM05D003562 ORTHO05D004074 9.3e-15 85.1 201 28.9
SEGI_35747 Sequoiadendron giganteum HOM05D003562 ORTHO05D004074 2.1e-14 84.0 161 29.2
CANSAT11G2347 Cannabis sativa HOM05D003562 ORTHO05D004074 6.0e-14 82.4 147 32.7
ECA247G0148 Erigeron canadensis HOM05D003562 ORTHO05D004074 6.0e-14 82.4 131 35.1
Lsat_1_v5_gn_3_4941 Lactuca sativa HOM05D003562 ORTHO05D004074 6.0e-14 82.4 116 35.3
HPP92_000706 Vanilla planifolia HOM05D003562 ORTHO05D004074 1.3e-13 81.3 146 32.2
BolC2t11816H Brassica oleracea HOM05D003562 ORTHO05D004074 1.7e-13 80.9 116 37.9
Zm00001eb188200 Zea mays HOM05D003562 ORTHO05D004074 5.1e-13 79.3 197 27.4
CDE01G0328 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 6.6e-13 79.0 208 29.8
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 6.6e-13 79.0 141 31.2
BraA02t08793Z Brassica rapa HOM05D003562 ORTHO05D004074 1.5e-12 77.8 114 37.7
Actinidia10167 Actinidia chinensis HOM05D003562 ORTHO05D004074 2.5e-12 77.0 109 34.9
Lsat_1_v5_gn_4_44700 Lactuca sativa HOM05D003562 ORTHO05D004074 4.3e-12 76.3 113 32.7
TAR636G1190 Trochodendron aralioides HOM05D003562 ORTHO05D004074 1.6e-11 74.3 208 23.6
CARHR266600 Cardamine hirsuta HOM05D003562 ORTHO05D004074 2.1e-11 73.9 115 36.5
CANSAT11G1241 Cannabis sativa HOM05D003562 ORTHO05D004074 2.8e-11 73.6 136 36.0
CANSAT01G2732 Cannabis sativa HOM05D003562 ORTHO05D004074 1.1e-10 71.6 176 30.1
Mapoly0008s0158 Marchantia polymorpha HOM05D003562 ORTHO05D004074 1.1e-10 71.6 171 29.8
AagrBONN_evm.TU.Sc2ySwM_362.1627 Anthoceros agrestis HOM05D003562 ORTHO05D004074 2.4e-10 70.5 169 26.6
Ah.10g030580 Amaranthus hybridus HOM05D003562 ORTHO05D004074 5.3e-10 69.3 104 34.6
CDE12G0883 Ceratophyllum demersum HOM05D000824 ORTHO05D002221 6.9e-10 68.9 189 28.0
Pp3c12_13390 Physcomitrium patens HOM05D003562 ORTHO05D004074 2.0e-09 67.4 177 29.4
PGSC0003DMG400009785 Solanum tuberosum HOM05D003562 ORTHO05D004074 3.4e-09 66.6 101 34.7
Pp3c25_14670 Physcomitrium patens HOM05D003562 ORTHO05D004074 5.8e-09 65.9 109 36.7
AUR62026879 Chenopodium quinoa HOM05D003562 ORTHO05D004074 2.2e-08 63.9 92 38.0
Cre10.g423700 Chlamydomonas reinhardtii HOM05D003562 ORTHO05D004074 3.2e-07 60.1 61 41.0


User provided reference genes

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