Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1818.5 954 100.0
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1760.3 954 97.1
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1678.7 954 92.0
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1664.8 954 90.5
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1663.3 954 90.5
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1658.7 954 90.6
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1654.4 977 90.0
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1379.0 963 75.6
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1367.8 985 75.2
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1354.7 990 73.4
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1352.4 980 72.9
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1334.7 977 72.8
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1334.7 977 73.2
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1320.4 971 74.2
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1303.9 966 72.6
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1303.1 1013 68.9
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1301.6 1163 63.5
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1285.8 965 71.4
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1277.3 984 70.6
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1276.2 985 69.1
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1270.0 995 69.6
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1268.4 992 69.1
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1267.7 994 68.8
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1266.5 975 70.5
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1260.4 997 68.8
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1255.7 995 68.7
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1255.0 969 69.7
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1255.0 969 69.7
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1255.0 996 68.4
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1250.3 993 67.4
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1250.0 996 67.1
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1245.0 993 69.3
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1243.8 992 68.1
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1240.7 1002 67.0
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1240.7 962 69.9
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1240.3 1031 65.3
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1239.2 1050 64.4
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1238.4 969 68.4
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1236.1 1028 64.6
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1234.9 1034 64.9
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1234.6 1025 65.5
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1234.2 980 69.4
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1233.8 1007 66.2
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1230.7 994 68.4
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1229.5 986 68.9
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1229.5 1018 66.3
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1229.2 986 67.8
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1222.6 1071 64.3
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1221.5 1048 65.6
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1217.6 1021 64.3
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1216.8 1036 65.1
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1214.1 1053 64.5
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1214.1 980 66.5
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1213.7 997 67.7
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1213.7 981 67.5
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1209.9 977 67.7
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1209.5 1048 64.9
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1209.1 988 66.5
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1206.8 966 67.2
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1201.4 979 66.7
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1201.4 967 66.7
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1201.4 969 66.8
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1201.4 967 66.7
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1200.7 1044 65.1
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1200.3 967 66.7
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1198.7 976 67.3
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1196.4 969 66.2
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1194.5 967 66.3
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1193.7 969 65.9
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1192.2 969 66.6
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1191.8 964 65.9
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1189.1 978 66.0
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1188.7 973 65.9
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1187.9 969 65.8
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1187.6 971 66.2
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1185.6 827 77.4
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1183.7 979 65.8
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1165.2 846 74.7
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1161.0 993 62.8
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1157.5 971 64.5
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1124.8 983 63.9
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 0.0e+00 1118.6 978 64.6
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1115.1 995 59.7
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 0.0e+00 1100.1 984 61.4
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 0.0e+00 1093.2 999 60.7
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 0.0e+00 1079.3 1003 59.9
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 0.0e+00 1078.5 955 65.0
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 6.5e-312 1074.7 906 65.9
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 6.5e-312 1073.9 821 71.3
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 9.0e-304 1047.0 883 66.7
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.1e-272 943.7 1011 53.0
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 1.8e-267 926.4 1070 50.1
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 3.2e-261 905.6 1062 49.1
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 3.7e-257 892.1 975 51.1
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 2.0e-255 886.3 992 52.9
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 1.1e-245 854.0 764 62.6
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.5e-245 853.6 712 66.2
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 1.0e-222 777.7 789 58.6
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 2.8e-212 743.0 917 50.3
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 5.8e-210 735.3 596 66.6
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.3e-209 734.2 615 65.5
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 7.9e-191 671.8 549 66.5
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 3.3e-173 613.2 592 59.3
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 7.9e-167 592.0 555 58.2
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 1.4e-155 554.7 971 35.6
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 1.4e-134 485.0 371 65.2
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 1.5e-128 464.9 982 34.2
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 1.5e-128 464.9 397 61.5
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.0e-126 458.8 305 73.4
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.2e-125 455.3 278 83.8
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 2.9e-124 450.7 269 84.8
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 3.3e-120 437.2 378 60.6
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 3.1e-118 430.6 277 79.8
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 1.5e-112 411.8 1315 29.0
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 3.4e-109 400.6 935 32.0
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 1.1e-107 395.6 297 68.0
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.4e-102 378.6 367 55.6
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 2.3e-97 361.3 352 52.8
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.9e-80 305.1 287 56.4
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 4.8e-79 300.4 184 79.9
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 4.2e-75 287.3 226 66.8
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.2e-69 269.2 176 74.4
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.3e-68 265.8 247 59.1
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 1.7e-68 265.4 145 91.0
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 1.6e-58 232.3 185 65.4
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.1e-58 231.9 144 77.1
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 7.9e-58 229.9 150 75.3
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.9e-54 216.9 177 65.0
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 9.4e-51 206.5 130 76.2
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.0e-48 198.7 130 73.8
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 2.8e-47 194.9 105 91.4
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 7.0e-46 190.3 214 53.7
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.5e-45 187.6 131 71.0
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 5.0e-44 184.1 161 60.9
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 9.4e-43 179.9 221 51.1
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 2.3e-41 175.3 98 86.7
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 5.9e-37 160.6 121 71.1
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.1e-35 156.4 101 74.3
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 2.9e-28 131.7 85 71.8
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 3.6e-26 124.8 206 42.2
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 6.1e-26 124.0 85 68.2
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 1.5e-24 119.4 139 51.8
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 3.7e-23 114.8 170 39.4
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 3.7e-15 88.2 42 97.6
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 2.9e-07 62.0 45 71.1


User provided reference genes

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