Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 0.0e+00 1761.9 973 100.0
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 0.0e+00 1572.8 973 89.0
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 0.0e+00 1237.6 957 74.4
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 0.0e+00 1236.1 957 74.3
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 0.0e+00 1195.6 957 72.5
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 1.9e-309 1065.8 944 64.9
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 7.1e-280 967.6 682 78.6
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 3.9e-278 961.8 957 58.6
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 3.3e-269 932.2 974 58.8
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 3.3e-269 932.2 954 57.3
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 8.1e-268 927.5 974 56.4
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 1.9e-264 916.4 1023 55.2
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 5.3e-259 898.3 1009 54.7
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 2.2e-257 892.9 928 56.8
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.4e-256 890.2 929 56.6
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 2.1e-255 886.3 931 55.6
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 1.0e-254 884.0 1013 54.6
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 2.1e-252 876.3 948 54.6
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 3.1e-251 872.5 955 54.8
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 1.2e-250 870.5 999 53.9
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.7e-249 866.7 926 56.5
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 2.2e-249 866.3 1022 55.1
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 5.0e-249 865.1 941 54.7
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 3.2e-248 862.4 949 55.1
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 2.7e-247 859.4 970 54.2
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 3.6e-247 859.0 971 53.8
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 2.2e-244 849.7 971 53.7
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 4.8e-244 848.6 970 53.4
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 6.3e-244 848.2 965 53.1
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 1.1e-243 847.4 943 54.1
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 7.7e-242 841.3 950 53.7
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 1.7e-241 840.1 833 58.1
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 5.5e-240 835.1 989 51.2
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 6.1e-239 831.6 1010 55.8
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 1.0e-238 830.9 968 52.3
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 1.4e-238 830.5 961 53.3
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 5.1e-238 828.6 998 49.6
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 5.1e-238 828.6 947 53.6
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.3e-236 823.9 965 51.7
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 3.7e-236 822.4 918 53.7
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 1.4e-235 820.5 1013 49.3
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.8e-235 820.1 965 51.6
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 1.8e-235 820.1 997 53.9
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 2.4e-235 819.7 970 52.1
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 3.1e-235 819.3 966 51.7
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 4.1e-235 818.9 797 59.3
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 6.9e-235 818.1 966 51.6
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 1.3e-233 813.9 1011 53.1
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.7e-233 813.5 929 52.9
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 6.5e-233 811.6 996 50.6
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 8.5e-233 811.2 1029 50.6
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.9e-232 810.1 801 59.8
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 3.2e-232 809.3 900 53.6
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 2.1e-231 806.6 1020 52.3
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 2.1e-231 806.6 993 50.1
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 4.7e-231 805.4 1000 50.7
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 2.3e-230 803.1 1013 54.0
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 3.9e-230 802.4 1011 53.2
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 1.5e-229 800.4 1010 53.5
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 2.4e-227 793.1 1002 50.4
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 4.1e-227 792.3 907 51.6
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 4.1e-227 792.3 946 50.5
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 1.6e-226 790.4 967 51.3
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 1.6e-226 790.4 963 51.1
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 2.0e-226 790.0 970 50.0
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 3.5e-226 789.3 938 51.7
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 3.6e-223 779.2 1007 48.1
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 3.3e-221 772.7 945 52.5
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 1.3e-220 770.8 920 50.2
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 4.8e-220 768.8 967 49.6
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 4.8e-220 768.8 1004 48.5
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 7.0e-219 765.0 994 49.1
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 9.1e-219 764.6 949 49.8
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 2.0e-218 763.5 951 50.2
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 4.7e-215 752.3 939 50.9
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 1.2e-213 747.7 920 49.5
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 2.8e-212 743.0 989 48.2
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 3.1e-211 739.6 961 49.7
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.2e-210 737.6 886 51.9
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 3.5e-210 736.1 1028 47.8
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 5.9e-210 735.3 956 49.3
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 6.3e-204 715.3 950 50.2
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 1.7e-201 707.2 919 48.0
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 6.6e-201 705.3 836 50.5
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 2.5e-200 703.4 947 46.8
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 9.2e-195 684.9 985 44.8
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 1.9e-192 677.2 1000 44.9
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 2.5e-192 676.8 979 45.0
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 5.6e-192 675.6 1003 44.7
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 3.1e-190 669.8 985 45.0
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 9.8e-189 664.8 785 52.0
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 1.1e-187 661.4 990 43.8
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 1.1e-187 661.4 990 43.8
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 7.0e-187 658.7 990 43.7
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 2.7e-186 656.8 887 46.7
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 3.0e-185 653.3 992 43.5
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 5.0e-185 652.5 930 45.4
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 2.5e-184 650.2 978 46.5
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 6.0e-178 629.0 1000 43.3
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 1.5e-176 624.4 1003 42.6
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 3.3e-176 623.2 979 42.4
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 6.8e-174 615.5 980 42.7
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 6.8e-174 615.5 1002 42.1
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 6.0e-170 602.4 539 60.9
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 9.6e-168 595.1 995 40.5
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 2.6e-165 587.0 994 39.9
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 3.4e-165 586.6 1002 42.3
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 6.6e-161 572.4 546 57.3
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 5.6e-160 569.3 992 39.9
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 5.6e-152 542.7 944 39.8
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.4e-150 537.3 992 39.0
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 4.8e-143 513.1 975 36.8
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 3.4e-141 506.9 543 52.1
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 4.5e-133 479.9 911 38.1
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.0e-125 454.5 545 51.6
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.7e-124 451.4 567 49.9
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 2.4e-110 404.4 928 35.1
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 1.6e-85 322.0 477 49.5
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 2.5e-83 314.7 367 55.3
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 4.4e-80 303.9 405 44.0
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 7.0e-78 296.6 394 44.9
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 7.8e-77 293.1 288 52.1
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 1.5e-72 278.9 314 49.4
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 9.8e-72 276.2 295 50.5
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 3.2e-70 271.2 407 48.9
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 4.1e-70 270.8 387 48.1
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 1.7e-60 238.8 513 31.8
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 6.6e-60 236.9 376 49.5
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.5e-59 235.0 323 40.9
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 2.4e-54 218.4 232 51.3
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 3.8e-47 194.5 933 24.8
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 5.1e-44 184.1 163 55.8
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 1.1e-38 166.4 346 41.9
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 7.4e-35 153.7 208 49.5
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 2.2e-31 142.1 151 57.0
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 6.4e-31 140.6 151 57.0
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 1.4e-25 122.9 145 44.8
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.5e-19 102.1 86 55.8
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 3.3e-19 101.7 77 64.9
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.5e-16 92.8 88 51.1
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 2.2e-15 89.0 63 69.8
PGSC0003DMG402029949 Solanum tuberosum HOM05D004199 ORTHO05D005905 3.2e-14 85.1 47 93.6
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 6.1e-13 80.9 94 56.4
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 3.9e-12 78.2 91 54.9
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 6.7e-12 77.4 82 51.2
Sabra10G0198200 Salix brachista HOM05D004199 ORTHO05D349944 4.3e-11 74.7 141 42.6
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 6.9e-09 67.4 52 55.8
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 2.9e-07 62.0 87 50.6
EL10Ac2g03784 Beta vulgaris HOM05D004199 ORTHO05D019838 1.9e-06 59.3 61 54.1
EL10Ac3g06366 Beta vulgaris HOM05D004199 ORTHO05D019838 1.9e-06 59.3 61 54.1
AagrBONN_evm.TU.Sc2ySwM_368.453 Anthoceros agrestis HOM05D030179 ORTHO05D026588 7.2e-06 57.4 49 53.1
EL10Ac7g17540 Beta vulgaris HOM05D000966 ORTHO05D019838 9.4e-06 57.0 59 54.2


User provided reference genes

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