Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 1.1e-176 623.2 313 100.0
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 4.6e-164 581.3 313 94.2
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 1.0e-142 510.4 314 83.4
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 2.1e-140 502.7 314 81.8
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 3.5e-140 501.9 314 81.5
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 4.8e-137 491.5 314 79.9
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 1.4e-125 453.4 325 74.8
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 6.3e-121 438.0 330 68.8
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 2.6e-114 416.0 314 69.4
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 2.6e-114 416.0 314 69.4
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 1.3e-113 413.7 315 67.3
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 8.2e-113 411.0 313 69.6
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 8.2e-113 411.0 313 68.4
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 2.0e-111 406.4 315 67.9
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 2.0e-111 406.4 321 66.4
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 2.6e-111 406.0 327 65.4
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 7.7e-111 404.4 315 66.7
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 1.7e-110 403.3 318 65.7
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 1.7e-110 403.3 313 66.8
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 2.2e-110 402.9 312 66.7
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 2.2e-110 402.9 313 65.8
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 2.9e-110 402.5 324 64.8
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 8.5e-110 401.0 311 67.2
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 1.1e-109 400.6 332 66.3
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 1.5e-109 400.2 257 73.5
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 3.2e-109 399.1 298 69.1
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 4.2e-109 398.7 315 65.4
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 7.2e-109 397.9 323 63.8
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 2.1e-108 396.4 314 66.2
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 8.0e-108 394.4 308 64.6
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 2.3e-107 392.9 334 62.9
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 5.2e-107 391.7 327 62.1
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 6.7e-107 391.3 327 61.8
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 8.8e-107 391.0 327 61.8
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 1.5e-106 390.2 315 63.5
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 3.3e-106 389.0 315 63.8
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 4.4e-106 388.7 320 63.4
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 5.7e-106 388.3 315 63.5
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 9.7e-106 387.5 310 62.9
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 1.7e-105 386.7 312 62.8
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 1.7e-105 386.7 311 63.7
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 2.2e-105 386.3 313 62.0
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 2.2e-105 386.3 314 64.0
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 8.2e-105 384.4 315 62.9
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 8.2e-105 384.4 314 66.6
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 4.1e-104 382.1 315 63.5
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 4.1e-104 382.1 314 65.0
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 4.1e-104 382.1 310 63.9
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 4.1e-104 382.1 322 63.0
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 5.3e-104 381.7 353 57.5
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 5.3e-104 381.7 313 65.5
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 5.3e-104 381.7 317 62.5
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 9.1e-104 380.9 318 63.8
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 1.6e-103 380.2 318 62.9
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 3.5e-103 379.0 314 64.3
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 5.9e-103 378.3 314 62.1
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 1.3e-102 377.1 316 63.9
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 1.3e-102 377.1 315 64.4
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 2.2e-102 376.3 318 63.5
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 2.9e-102 375.9 314 62.1
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 2.9e-102 375.9 316 63.9
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 3.8e-102 375.6 310 64.5
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 6.5e-102 374.8 309 61.8
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 1.1e-101 374.0 325 61.8
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 1.9e-101 373.2 342 58.8
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 4.2e-101 372.1 327 61.5
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 4.2e-101 372.1 267 70.0
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 4.2e-101 372.1 310 62.6
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 9.4e-101 370.9 352 57.7
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 3.6e-100 369.0 315 62.5
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 4.7e-100 368.6 212 80.2
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 6.1e-100 368.2 209 81.8
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 1.4e-99 367.1 321 61.4
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 3.0e-99 365.9 324 61.7
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 3.0e-99 365.9 326 60.4
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 2.6e-98 362.8 326 61.3
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 2.6e-98 362.8 316 59.8
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 3.4e-98 362.5 329 60.5
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 3.4e-98 362.5 309 63.1
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 4.4e-98 362.1 316 61.1
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 5.7e-98 361.7 316 60.4
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 5.7e-98 361.7 326 60.1
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 8.3e-97 357.8 328 59.8
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 2.4e-96 356.3 320 59.1
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 2.4e-96 356.3 320 59.1
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 2.4e-96 356.3 320 59.1
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 4.1e-96 355.5 318 60.1
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 5.4e-96 355.1 316 61.4
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 5.4e-96 355.1 316 61.4
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 5.4e-96 355.1 316 61.4
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 5.4e-96 355.1 311 59.5
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 7.0e-96 354.8 205 79.0
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 2.0e-95 353.2 337 57.3
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 1.0e-94 350.9 207 77.8
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 6.6e-94 348.2 302 62.3
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 8.6e-94 347.8 305 64.9
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 2.8e-92 342.8 310 58.7
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 5.2e-91 338.6 281 59.1
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 7.5e-90 334.7 291 60.5
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 8.3e-89 331.3 313 59.1
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.5e-87 325.5 271 60.5
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 1.7e-86 323.6 289 60.6
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 3.8e-86 322.4 276 56.5
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.5e-85 320.5 257 58.0
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 7.3e-85 318.2 260 60.8
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 1.2e-84 317.4 278 56.1
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 1.5e-82 310.5 316 56.0
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 9.2e-80 301.2 313 55.9
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.0e-79 300.1 252 55.6
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 2.3e-78 296.6 363 48.8
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 6.6e-78 295.0 278 55.8
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.5e-77 293.9 252 55.6
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 3.0e-70 269.6 205 60.0
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 6.6e-70 268.5 227 65.2
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 1.5e-69 267.3 203 60.6
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 4.7e-68 262.3 240 62.1
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 8.9e-67 258.1 180 72.2
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 6.4e-65 251.9 239 60.7
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.1e-56 224.6 194 56.7
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 2.7e-55 219.9 165 61.8
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 1.3e-54 217.6 183 56.3
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 3.9e-54 216.1 204 55.9
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 4.9e-49 199.1 209 53.6
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 2.4e-48 196.8 199 52.8
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 3.2e-48 196.4 108 84.3
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 3.3e-37 159.8 100 76.0
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 6.2e-36 155.6 97 78.4
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 3.4e-34 149.8 174 43.1
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.0e-33 148.3 174 42.5
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 2.2e-33 147.1 84 77.4
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.4e-33 145.6 174 42.0
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.1e-31 140.6 174 41.4
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 1.3e-28 131.3 76 75.0
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 6.2e-28 129.0 89 67.4
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.3e-27 125.9 165 40.0
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 1.2e-26 124.8 79 74.7
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 2.0e-26 124.0 174 37.9
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 1.7e-25 120.9 164 45.7
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.0e-22 111.7 174 34.5
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 1.8e-22 110.9 140 45.0
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.3e-20 104.8 174 31.6
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.3e-20 104.8 174 31.6
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 8.2e-20 102.1 116 44.0
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.8e-19 100.9 174 31.6
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 9.0e-19 98.6 69 62.3
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.2e-17 94.0 119 40.3
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 8.2e-12 75.5 57 63.2
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 5.9e-10 69.3 157 26.8
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 1.7e-09 67.8 67 50.7
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 2.2e-09 67.4 174 26.4
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.7e-07 59.7 102 32.4
AUR62002800 Chenopodium quinoa HOM05D004663 ORTHO05D006325 7.9e-07 58.9 32 75.0


User provided reference genes

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