Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.2e-153 545.0 277 100.0
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 2.0e-139 499.2 264 95.5
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 1.4e-119 433.3 268 83.6
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 2.3e-119 432.6 268 84.0
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 4.9e-117 424.9 268 84.7
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 1.1e-113 413.7 266 80.5
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 6.2e-112 407.9 264 81.1
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 4.6e-99 365.2 256 71.5
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 1.5e-97 360.1 260 69.6
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 9.6e-97 357.5 260 69.2
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 3.6e-96 355.5 256 70.3
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 6.2e-96 354.8 234 73.9
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 6.2e-96 354.8 221 76.9
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 8.1e-96 354.4 230 75.2
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 1.4e-95 353.6 260 69.6
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 3.1e-95 352.4 221 75.1
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 4.0e-95 352.1 265 67.2
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 5.2e-95 351.7 283 64.7
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 1.2e-94 350.5 269 67.3
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 2.0e-94 349.7 256 69.1
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 2.0e-94 349.7 219 80.8
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 2.6e-94 349.4 212 78.3
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 4.4e-94 348.6 265 67.2
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 5.8e-94 348.2 266 69.2
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 5.8e-94 348.2 265 66.8
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 5.8e-94 348.2 270 66.7
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 5.8e-94 348.2 265 67.9
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 1.7e-93 346.7 255 69.8
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.7e-93 346.7 229 73.4
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 2.9e-93 345.9 269 66.2
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 2.4e-92 342.8 255 71.0
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 2.4e-92 342.8 278 63.7
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 2.4e-92 342.8 254 68.1
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 2.4e-92 342.8 254 68.1
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 4.2e-92 342.0 259 68.0
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 9.3e-92 340.9 216 77.3
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 9.3e-92 340.9 268 67.2
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 9.3e-92 340.9 260 68.8
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.1e-91 339.7 277 63.5
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 2.1e-91 339.7 266 66.5
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 2.1e-91 339.7 269 69.5
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 4.6e-91 338.6 260 66.9
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 4.6e-91 338.6 260 66.9
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 4.6e-91 338.6 237 72.6
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 5.1e-90 335.1 242 67.4
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 5.1e-90 335.1 265 65.3
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 5.1e-90 335.1 207 78.3
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 6.6e-90 334.7 266 69.2
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 1.5e-89 333.6 220 75.5
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 2.5e-89 332.8 269 68.8
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.3e-89 332.4 265 67.9
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 3.3e-89 332.4 265 63.8
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 7.3e-89 331.3 264 63.6
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 9.6e-89 330.9 219 77.6
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 2.1e-88 329.7 255 68.6
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 2.8e-88 329.3 209 73.7
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 1.4e-87 327.0 260 63.8
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 1.8e-87 326.6 255 66.3
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 2.4e-87 326.2 265 61.9
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 2.4e-87 326.2 265 63.4
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 3.1e-87 325.9 292 59.9
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 5.3e-87 325.1 267 67.0
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.5e-86 323.6 272 66.2
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 1.5e-86 323.6 258 63.6
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 2.0e-86 323.2 261 66.7
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 2.6e-86 322.8 278 62.9
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 7.6e-86 321.2 187 81.8
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 9.9e-86 320.9 265 66.4
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 9.9e-86 320.9 265 65.3
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 1.3e-85 320.5 256 64.1
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.4e-84 317.0 259 64.9
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 5.4e-84 315.1 259 64.5
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 9.3e-84 314.3 269 65.8
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 2.1e-83 313.2 254 66.1
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 3.9e-82 308.9 271 63.1
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 6.6e-82 308.1 278 62.9
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 6.6e-82 308.1 179 80.4
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 1.1e-81 307.4 235 65.5
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 2.5e-81 306.2 268 65.7
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.3e-81 305.8 185 78.4
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 2.8e-80 302.8 157 88.5
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 6.2e-80 301.6 265 62.6
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 1.4e-79 300.4 262 63.0
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 1.8e-79 300.1 263 62.0
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 3.1e-79 299.3 259 64.1
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 4.5e-78 295.4 154 89.6
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 5.8e-78 295.0 156 87.2
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 3.2e-76 289.3 157 84.1
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 1.0e-74 284.3 242 61.2
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 2.3e-74 283.1 258 60.5
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 2.5e-68 263.1 137 88.3
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.3e-66 257.3 218 63.3
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.3e-66 257.3 241 59.8
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 6.7e-66 255.0 209 61.7
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 2.5e-65 253.1 227 63.0
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.1e-64 250.0 176 68.2
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.1e-64 250.0 176 68.2
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 5.3e-63 245.4 216 57.9
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.7e-61 240.4 265 54.7
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 3.9e-58 229.2 229 58.1
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 6.7e-58 228.4 160 66.9
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 2.2e-56 223.4 179 65.9
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.9e-53 213.0 193 58.0
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 5.0e-53 212.2 213 52.6
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 9.4e-52 208.0 217 46.5
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 1.1e-47 194.5 103 86.4
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.2e-45 186.8 158 62.0
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.2e-43 181.0 99 84.8
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 2.6e-38 163.3 138 55.1
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 1.5e-36 157.5 156 55.1
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 7.5e-33 145.2 76 86.8
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.0e-30 137.1 178 47.8
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.2e-27 127.9 109 61.5
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 6.1e-27 125.6 61 91.8
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 1.8e-23 114.0 107 50.5
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 6.5e-21 105.5 143 42.0
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 5.9e-14 82.4 48 77.1
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 5.0e-13 79.3 41 90.2
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 9.5e-12 75.1 158 36.7
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.4e-09 66.2 68 51.5
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.4e-09 66.2 68 51.5
CsaV3_5G018930 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.6e-06 56.2 59 47.5


User provided reference genes

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