Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003845g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 2515.3 1283 100.0
Nitab4.5_0006677g0040 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 2193.3 1227 91.1
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 2003.8 1225 82.3
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1983.8 1225 81.8
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 0.0e+00 1788.1 1201 76.1
Peaxi162Scf00094g01313 Petunia axillaris HOM05D003688 ORTHO05D004338 0.0e+00 1725.7 1219 72.4
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1682.5 1227 70.8
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1670.6 1227 70.4
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 0.0e+00 1644.4 1227 69.3
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 1635.2 1203 70.2
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 0.0e+00 1471.1 1215 63.4
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1466.4 1242 61.4
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 0.0e+00 1444.5 1234 61.5
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 0.0e+00 1442.9 1258 60.9
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 0.0e+00 1385.5 1217 60.1
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 1375.5 1189 63.4
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 0.0e+00 1372.5 1211 59.4
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 0.0e+00 1360.9 1244 57.9
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 0.0e+00 1355.5 1240 58.0
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 0.0e+00 1352.0 1243 58.4
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 0.0e+00 1342.4 1240 57.7
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 0.0e+00 1338.6 1234 56.6
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 0.0e+00 1325.5 1240 57.0
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 0.0e+00 1323.5 1238 56.9
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1314.3 1262 56.1
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 0.0e+00 1311.6 1240 56.4
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 0.0e+00 1307.0 1217 56.5
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 0.0e+00 1306.6 1240 57.2
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1305.8 1238 56.5
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 0.0e+00 1293.5 1243 55.1
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 0.0e+00 1291.6 1241 56.2
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 0.0e+00 1286.6 1240 55.6
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 0.0e+00 1285.8 1245 55.7
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 0.0e+00 1283.1 1243 55.6
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1271.9 1245 55.3
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1263.8 1242 55.5
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1262.7 1245 54.9
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 0.0e+00 1261.9 1242 56.1
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1258.8 1248 55.1
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1257.7 1252 54.8
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1252.7 1240 54.7
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1251.9 1240 54.9
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1248.8 1240 55.5
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1246.9 1240 54.2
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1243.8 1271 54.3
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1243.8 1231 55.1
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 0.0e+00 1241.9 1238 54.7
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 0.0e+00 1229.2 1243 54.1
Oeu036138.2 Olea europaea HOM05D003688 ORTHO05D004338 0.0e+00 1228.4 1181 56.4
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1226.8 1271 53.7
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 0.0e+00 1223.4 1245 53.7
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1223.0 1271 53.4
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1221.5 1245 53.7
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 0.0e+00 1219.9 1271 53.2
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1218.0 1241 53.8
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1217.2 1245 53.7
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 0.0e+00 1216.1 1220 55.2
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1213.7 1245 53.2
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 0.0e+00 1209.5 1237 53.8
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1208.0 1241 53.0
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 0.0e+00 1206.0 1241 53.7
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 0.0e+00 1202.2 1232 53.6
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 0.0e+00 1199.9 1242 52.8
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1199.9 1204 55.6
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 0.0e+00 1199.5 1237 52.5
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 0.0e+00 1197.2 1235 54.5
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1196.8 1289 50.9
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1195.3 1250 53.6
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1194.9 1240 52.6
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1192.2 1238 52.9
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1189.1 1244 52.9
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1186.4 1242 52.0
CAN.G326.3 Capsicum annuum HOM05D003688 ORTHO05D004338 0.0e+00 1183.3 749 78.2
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1183.3 1376 49.6
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 0.0e+00 1182.9 1238 50.9
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 0.0e+00 1182.5 1237 52.7
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1174.1 1253 51.3
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1172.1 1244 51.8
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 0.0e+00 1170.2 1239 52.0
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1168.7 1248 51.9
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1163.7 1254 52.2
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1152.1 1247 51.5
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1148.7 1245 51.6
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 0.0e+00 1140.6 1247 50.1
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1118.2 1230 51.4
MBI14_g36919_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 0.0e+00 1117.1 1238 51.1
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 0.0e+00 1113.2 1208 51.7
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1105.9 1230 50.2
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 0.0e+00 1103.6 1249 50.9
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1098.6 1245 50.0
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1097.4 1240 50.2
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1090.9 1240 49.9
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1084.7 1255 49.9
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 5.1e-310 1068.1 1255 48.8
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 7.6e-298 1027.7 1252 47.2
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 4.2e-296 1021.9 1238 48.3
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 3.5e-295 1018.8 1239 47.4
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 7.4e-293 1011.1 1245 47.6
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 2.4e-291 1006.1 1235 47.4
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 4.0e-291 1005.4 1235 47.4
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 2.0e-290 1003.0 1250 47.3
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 4.5e-290 1001.9 1236 47.3
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 4.5e-290 1001.9 1236 47.4
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 2.5e-288 996.1 1261 47.3
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 4.2e-288 995.3 1249 46.9
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 3.5e-287 992.3 1281 45.8
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 8.7e-286 987.6 1258 46.6
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 3.3e-285 985.7 1258 46.6
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 2.8e-284 982.6 1232 47.5
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 2.0e-282 976.5 1235 46.6
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 4.5e-282 975.3 1241 46.1
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 2.2e-281 973.0 1235 46.7
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 2.9e-281 972.6 1245 46.2
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 1.9e-280 969.9 1235 46.6
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 6.7e-278 961.4 1260 45.3
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 2.5e-277 959.5 1230 46.5
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 1.9e-272 943.3 1225 46.1
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 1.9e-272 943.3 1225 46.1
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 7.2e-272 941.4 1252 44.5
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 2.0e-261 906.7 1256 45.2
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 6.7e-254 881.7 1254 43.5
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 7.0e-251 871.7 1302 41.2
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 2.4e-243 846.7 1223 43.4
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 1.3e-217 761.1 1236 40.9
Cpa.g.sc228.14 Carica papaya HOM05D003688 ORTHO05D004338 2.3e-214 750.4 837 52.1
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 4.3e-200 703.0 1326 35.5
Os01g0148050 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 1.5e-197 694.5 1006 43.6
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.3e-196 691.4 1334 35.5
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.1e-195 688.3 1314 35.3
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 1.9e-195 687.6 1104 40.3
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 2.4e-195 687.2 1263 36.9
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 2.7e-194 683.7 1233 37.0
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 6.0e-194 682.6 1267 36.6
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 4.3e-192 676.4 1356 35.7
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.8e-188 663.3 1316 34.1
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.8e-188 663.3 1316 34.1
Atru.chr8.1976 Acer truncatum HOM05D003688 ORTHO05D004338 3.2e-179 633.6 515 61.9
BcaC03g18435 Brassica carinata HOM05D003688 ORTHO05D004338 2.4e-166 590.9 1218 35.7
CAN.G326.2 Capsicum annuum HOM05D003688 ORTHO05D004338 5.7e-160 569.7 365 81.6
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 3.8e-132 477.2 441 58.5
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 2.2e-127 461.5 1588 27.1
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 1.1e-115 422.5 839 36.0
Oeu051935.1 Olea europaea HOM05D003688 ORTHO05D004338 8.3e-103 379.8 298 61.4
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 2.3e-100 371.7 410 52.4
Haze_03516 Corylus avellana HOM05D003688 ORTHO05D004338 5.4e-94 350.5 374 48.7
Psat2g029320 Pisum sativum HOM05D003688 ORTHO05D017064 1.0e-60 240.0 185 60.0
PRCOL_00001936 Prasinoderma coloniale HOM05D003688 ORTHO05D004338 2.8e-50 205.3 1313 23.1
Atru.chr8.1977 Acer truncatum HOM05D003688 ORTHO05D004338 5.3e-41 174.5 170 56.5
SHI12676 Sapria himalayana HOM05D003688 ORTHO05D004338 1.0e-39 170.2 458 32.8
SHI12675 Sapria himalayana HOM05D003688 ORTHO05D004338 1.6e-37 162.9 254 38.6
Lsat_1_v5_gn_4_33481 Lactuca sativa HOM05D003688 ORTHO05D004338 2.5e-30 139.0 171 50.3
unitig_0.g701 Utricularia gibba HOM05D003688 ORTHO05D004338 2.1e-29 136.0 79 81.0
AagrBONN_evm.TU.Sc2ySwM_344.5255 Anthoceros agrestis HOM05D003688 ORTHO05D004338 1.8e-25 122.9 1291 21.6
MCO04G508 Micromonas commoda HOM05D003688 ORTHO05D004338 1.7e-23 116.3 145 42.8
MBI19_g16672_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 1.3e-18 100.1 127 45.7
Pp3c9_4700 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.8e-18 99.0 203 33.5
Pp3c15_3560 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.8e-17 96.3 259 27.0
Pp3c17_2850 Physcomitrium patens HOM05D003688 ORTHO05D004338 9.1e-17 94.0 156 36.5
Mapoly0028s0055 Marchantia polymorpha HOM05D003688 ORTHO05D004338 3.5e-16 92.0 203 30.0
Sc20g0004930 Simmondsia chinensis HOM05D003688 ORTHO05D004338 2.2e-15 89.4 47 87.2
Cre02.g089237 Chlamydomonas reinhardtii HOM05D003688 ORTHO05D004338 5.0e-15 88.2 140 35.0
Pp3c2_29090 Physcomitrium patens HOM05D003688 ORTHO05D004338 8.5e-15 87.4 135 34.1
Pp3c7_22570 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.1e-14 87.0 184 28.3
Sc20g0004940 Simmondsia chinensis HOM05D003688 ORTHO05D004338 2.6e-11 75.9 41 82.9


User provided reference genes

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