Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003845g0020 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 1918.3 954 100.0
Nitab4.5_0006677g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 1617.4 862 93.5
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1416.7 871 81.3
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1414.1 871 81.1
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 0.0e+00 1290.0 819 79.9
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1225.3 878 71.6
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1216.8 826 74.6
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 0.0e+00 1191.4 793 75.8
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 0.0e+00 1097.0 833 66.4
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 0.0e+00 1097.0 842 67.3
Peaxi162Scf00094g00138 Petunia axillaris HOM05D003688 ORTHO05D004338 0.0e+00 1092.0 878 65.5
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 6.5e-312 1073.5 831 66.5
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 5.0e-310 1067.8 835 67.5
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 1.3e-307 1059.7 827 65.8
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 5.1e-307 1057.7 835 65.5
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 6.5e-302 1040.8 854 62.9
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 1.6e-300 1036.2 855 62.5
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 8.2e-297 1023.8 834 62.8
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 2.2e-294 1015.8 753 69.3
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 5.5e-293 1011.1 823 64.3
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 1.6e-292 1009.6 850 61.3
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 3.9e-291 1005.0 845 61.8
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 1.9e-290 1002.7 850 60.9
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 4.3e-290 1001.5 860 60.1
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 1.7e-289 999.6 856 61.3
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 1.7e-289 999.6 843 60.7
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 3.7e-289 998.4 842 60.7
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 4.8e-289 998.0 830 62.0
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 9.1e-288 993.8 842 60.5
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 1.2e-287 993.4 860 60.8
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 1.5e-287 993.0 826 62.2
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 3.4e-287 991.9 842 60.2
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 4.5e-287 991.5 842 61.2
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 3.8e-286 988.4 842 59.9
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 5.0e-286 988.0 860 59.8
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 1.8e-283 979.5 864 59.0
Cpa.g.sc228.13 Carica papaya HOM05D003688 ORTHO05D004338 3.7e-281 971.8 852 60.0
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 3.7e-281 971.8 847 59.3
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 3.7e-281 971.8 859 57.5
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 6.3e-281 971.1 862 58.9
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 1.5e-279 966.5 835 59.8
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 1.0e-278 963.8 840 58.6
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 1.9e-277 959.5 844 58.3
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 9.4e-277 957.2 846 57.9
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 3.6e-276 955.3 846 58.3
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 1.8e-275 953.0 873 58.0
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 7.4e-274 947.6 878 58.3
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 2.8e-273 945.7 843 59.7
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 2.8e-273 945.7 843 59.7
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 8.2e-273 944.1 842 59.7
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 1.1e-272 943.7 867 56.3
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 5.3e-272 941.4 841 57.9
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 4.2e-269 931.8 837 58.7
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 5.5e-269 931.4 838 58.6
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 9.4e-269 930.6 837 58.7
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 9.4e-269 930.6 868 57.0
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 1.6e-268 929.9 834 59.0
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 8.0e-268 927.5 913 56.2
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 1.0e-267 927.2 835 58.6
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 6.7e-267 924.5 864 56.1
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 6.3e-265 917.9 832 58.3
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 6.3e-265 917.9 828 58.1
VMungo1383G2756 Vigna mungo HOM05D003688 ORTHO05D004338 1.1e-264 917.1 853 57.3
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 7.0e-264 914.4 835 57.8
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 7.0e-264 914.4 828 57.7
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 3.5e-263 912.1 835 57.4
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 1.7e-262 909.8 844 56.8
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 2.9e-262 909.1 856 55.0
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 5.0e-262 908.3 849 57.2
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 6.5e-262 907.9 835 57.1
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 1.9e-261 906.4 839 57.9
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 2.7e-260 902.5 836 56.7
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 1.8e-259 899.8 844 57.0
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 1.5e-258 896.7 836 57.5
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 1.8e-256 889.8 836 56.9
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 5.0e-254 881.7 846 55.2
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 2.8e-252 875.9 856 54.8
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 1.2e-250 870.5 859 54.8
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 9.8e-250 867.5 830 55.7
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 1.8e-248 863.2 868 51.6
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 2.0e-247 859.8 831 56.0
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 3.6e-244 849.0 831 55.6
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 2.3e-243 846.3 842 53.4
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 7.5e-242 841.3 832 55.2
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 2.2e-241 839.7 832 55.0
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 5.4e-240 835.1 845 54.1
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 1.2e-239 833.9 833 53.2
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 1.2e-239 833.9 903 51.3
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 3.5e-239 832.4 834 51.4
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 1.1e-237 827.4 835 52.0
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 4.7e-236 822.0 829 53.6
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 8.0e-236 821.2 950 49.9
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 4.4e-234 815.5 832 51.9
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 1.7e-233 813.5 840 52.9
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 1.3e-230 803.9 897 49.2
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 2.3e-230 803.1 829 51.5
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 5.1e-230 802.0 826 51.5
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 2.5e-229 799.7 832 51.6
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 2.5e-229 799.7 834 52.3
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 4.3e-229 798.9 835 51.9
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 4.3e-229 798.9 832 51.7
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 5.6e-229 798.5 834 52.0
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 4.7e-228 795.4 904 48.6
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 8.1e-228 794.7 839 51.4
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 1.1e-227 794.3 836 52.0
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 1.1e-227 794.3 838 51.6
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 4.0e-227 792.3 824 50.2
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 4.0e-227 792.3 838 51.6
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 7.8e-223 778.1 827 50.5
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 1.9e-216 756.9 876 48.3
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 1.0e-214 751.1 843 49.1
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 4.8e-212 742.3 825 49.1
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 8.1e-212 741.5 825 49.1
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 1.8e-211 740.3 901 46.9
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 1.8e-211 740.3 901 46.8
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 1.8e-211 740.3 901 46.8
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 2.1e-199 700.3 886 45.4
Os01g0148000 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 1.3e-188 664.5 802 44.4
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.3e-185 654.4 823 48.8
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 5.1e-166 589.3 452 67.7
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 2.8e-164 583.6 841 41.9
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 5.0e-153 546.2 922 38.2
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 9.8e-149 531.9 918 37.5
GSVIVG01034167001 Vitis vinifera HOM05D003688 ORTHO05D004338 2.7e-146 523.9 376 68.4
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 1.1e-144 518.5 844 36.4
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 1.1e-144 518.5 840 36.8
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 1.9e-144 517.7 822 40.3
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 9.4e-144 515.4 878 36.0
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 6.3e-140 502.7 850 36.7
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 6.6e-137 492.7 823 37.7
Oeu051936.1 Olea europaea HOM05D003688 ORTHO05D004338 1.2e-135 488.4 433 59.8
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 4.0e-134 483.4 822 35.6
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 6.6e-129 466.1 831 35.6
Oeu033326.1 Olea europaea HOM05D003688 ORTHO05D004338 1.6e-127 461.5 304 73.0
BcaB01g06223 Brassica carinata HOM05D003688 ORTHO05D004338 1.2e-119 435.3 373 59.2
Oeu036137.1 Olea europaea HOM05D003688 ORTHO05D004338 5.2e-118 429.9 297 70.7
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 7.1e-115 419.5 829 35.2
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 1.0e-105 389.0 491 46.6
CDE04G0526 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 2.3e-97 361.3 330 56.7
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 3.1e-94 350.9 1007 29.8
Haze_03516 Corylus avellana HOM05D003688 ORTHO05D004338 1.8e-86 325.1 364 50.0
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 1.7e-60 238.8 444 36.7
Oeu039697.1 Olea europaea HOM05D003688 ORTHO05D004338 2.5e-59 235.0 229 54.1
CAN.G325.1 Capsicum annuum HOM05D003688 ORTHO05D004338 4.2e-59 234.2 158 76.6
PRCOL_00001936 Prasinoderma coloniale HOM05D003688 ORTHO05D004338 3.7e-55 221.1 847 26.4
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 8.2e-47 193.4 186 49.5
Pp3c22_8160 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.2e-43 181.4 244 41.4
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 5.9e-37 160.6 233 39.9
Pp3c7_22570 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.7e-34 151.8 416 27.9
Pp3c15_3560 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.4e-33 149.4 403 29.3
Pp3c17_2850 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.3e-33 148.7 357 29.7
Mapoly0028s0055 Marchantia polymorpha HOM05D003688 ORTHO05D004338 6.3e-31 140.6 427 26.7
AagrBONN_evm.TU.Sc2ySwM_344.5255 Anthoceros agrestis HOM05D003688 ORTHO05D004338 1.6e-29 136.0 420 28.6
Pp3c2_29090 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.7e-29 135.2 402 28.9
GSVIVG01023054001 Vitis vinifera HOM05D003688 ORTHO05D004338 2.2e-28 132.1 82 70.7
Pp3c9_4700 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.8e-28 131.3 371 28.8
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 2.3e-25 122.1 69 79.7
Cre02.g089237 Chlamydomonas reinhardtii HOM05D003688 ORTHO05D004338 3.0e-17 95.1 81 49.4
Psat5g038080 Pisum sativum HOM05D001700 ORTHO05D016448 5.2e-17 94.4 217 34.6
vmacro07102 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 5.2e-17 94.4 77 61.0
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 6.4e-15 87.4 80 55.0
MCO04G508 Micromonas commoda HOM05D003688 ORTHO05D004338 7.8e-13 80.5 84 42.9
Cfa025161 Carpinus fangiana HOM05D003688 ORTHO05D004338 5.6e-11 74.3 116 32.8


User provided reference genes

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