Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1697.2 945 100.0
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1534.2 1008 88.0
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1272.7 1025 73.5
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1270.4 1025 73.5
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1267.3 1025 71.6
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1253.0 1025 71.3
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1217.6 1025 64.7
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1217.2 1025 65.3
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1201.0 1025 64.6
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1186.0 1025 63.5
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1171.4 1025 63.4
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1159.4 1025 62.2
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1152.1 1009 63.6
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1139.4 1025 62.3
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1136.3 1025 61.1
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1129.4 1025 61.1
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1116.7 1025 60.1
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1105.9 1147 56.2
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1097.4 1025 60.5
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1095.9 1025 60.5
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1092.4 1025 60.1
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1090.9 1025 58.7
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1077.0 1025 58.0
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1076.6 1026 60.3
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 6.5e-312 1073.9 1025 57.9
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 3.7e-310 1068.1 1025 58.9
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 9.2e-309 1063.5 1044 59.0
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 5.1e-307 1057.7 1025 59.0
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 5.6e-306 1054.3 1025 57.6
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 1.4e-304 1049.7 1025 58.7
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 3.1e-304 1048.5 1025 58.0
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 4.0e-304 1048.1 1025 56.8
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 1.2e-300 1036.6 1025 57.6
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 2.1e-300 1035.8 1025 56.0
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 2.7e-300 1035.4 1025 57.0
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 1.7e-299 1032.7 1025 57.5
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 1.1e-298 1030.0 1025 57.8
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 2.5e-298 1028.9 1025 56.3
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 5.6e-298 1027.7 1178 52.2
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 3.6e-297 1025.0 1025 56.1
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 1.5e-295 1019.6 1033 57.6
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 2.6e-295 1018.8 1025 56.7
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 6.4e-294 1014.2 1025 55.7
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 1.4e-293 1013.1 1025 56.5
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 1.2e-292 1010.0 1257 50.0
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 1.2e-292 1010.0 1025 56.0
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 3.5e-292 1008.4 1064 54.2
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 1.9e-290 1002.7 1051 55.6
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 9.3e-285 983.8 1025 54.6
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 3.9e-283 978.4 1025 54.3
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 1.9e-282 976.1 1025 55.9
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 6.2e-281 971.1 1002 57.1
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 8.1e-281 970.7 1025 55.1
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 1.4e-277 959.9 1025 55.2
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 1.6e-273 946.4 1025 53.5
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 3.7e-273 945.3 1042 53.2
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 4.8e-273 944.9 1025 53.2
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 1.1e-272 943.7 1046 53.0
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 3.1e-272 942.2 1063 51.8
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 2.0e-271 939.5 1031 53.3
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 2.6e-271 939.1 1031 53.3
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 4.5e-271 938.3 1025 54.1
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 3.8e-270 935.3 1026 53.4
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 4.9e-270 934.9 1026 53.4
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 6.5e-270 934.5 1026 53.4
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 1.6e-268 929.9 1025 53.3
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 3.9e-267 925.2 1025 53.4
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 6.7e-267 924.5 1025 52.7
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 3.2e-261 905.6 1025 53.1
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 6.1e-260 901.4 1025 54.0
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 2.2e-257 892.9 1025 51.0
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 5.9e-255 884.8 1025 50.1
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 1.1e-253 880.6 1025 50.1
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 2.0e-250 869.8 1025 49.9
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 3.4e-247 859.0 1025 50.1
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 4.1e-224 782.3 1070 47.3
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 2.0e-210 736.9 942 46.4
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 5.8e-210 735.3 746 56.8
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 2.4e-176 623.6 825 48.4
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 2.1e-175 620.5 1008 38.7
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.7e-167 593.6 587 56.0
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 8.1e-164 582.0 956 41.4
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 3.5e-159 566.6 467 65.1
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 3.9e-158 563.1 599 53.1
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 6.7e-158 562.4 467 64.7
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 4.0e-155 553.1 746 45.0
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 6.9e-155 552.4 1025 36.1
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 8.4e-153 545.4 477 59.7
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 5.5e-152 542.7 467 64.9
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 3.0e-150 537.0 641 48.5
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 5.9e-146 522.7 1020 35.4
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 3.9e-142 510.0 426 67.4
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 2.4e-139 500.7 631 47.4
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 6.9e-139 499.2 945 37.5
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.0e-137 495.4 1013 36.8
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.4e-136 491.5 436 61.2
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.4e-136 491.5 436 61.2
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 1.0e-134 485.3 469 59.5
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 1.4e-134 485.0 469 59.3
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 1.1e-133 481.9 423 65.5
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 5.5e-128 463.0 467 58.7
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 2.7e-127 460.7 608 47.5
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 6.7e-126 456.1 487 50.5
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 9.4e-120 435.6 587 46.8
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 2.0e-114 417.9 1015 32.1
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 4.9e-100 370.2 326 62.9
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 7.8e-90 336.3 294 64.6
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 2.4e-83 314.7 286 60.8
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 6.8e-78 296.6 380 48.9
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 1.5e-77 295.4 229 66.4
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 6.2e-71 273.5 400 42.5
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 5.3e-62 243.8 178 71.3
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 4.3e-56 224.2 626 32.9
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.6e-55 222.2 203 59.1
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 5.1e-49 200.7 192 55.7
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.3e-41 175.3 124 73.4
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.5e-40 171.8 86 100.0
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 2.5e-40 171.8 1026 22.6
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 5.3e-38 164.1 87 94.3
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 5.8e-37 160.6 88 89.8
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 9.3e-35 153.3 114 68.4
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 1.6e-34 152.5 165 53.3
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 5.3e-30 137.5 137 56.9
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 2.9e-28 131.7 86 75.6
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 1.0e-25 123.2 1061 24.9
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 5.7e-24 117.5 61 90.2
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 7.7e-21 107.1 141 46.8
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 1.9e-19 102.4 90 61.1
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 2.5e-19 102.1 1019 21.0
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 9.4e-19 100.1 280 30.4
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 2.2e-12 79.0 1063 21.3
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 6.5e-12 77.4 124 39.5
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 4.2e-11 74.7 84 52.4
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 1.0e-09 70.1 77 51.9


User provided reference genes

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