Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 7.6e-189 663.7 336 100.0
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.3e-185 652.1 336 97.9
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 2.9e-172 608.6 336 90.2
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 3.2e-171 605.1 336 89.9
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 9.3e-171 603.6 336 89.9
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 4.0e-166 588.2 337 87.5
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 3.4e-165 585.1 338 87.6
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 4.3e-144 515.0 338 76.6
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 4.3e-144 515.0 338 76.6
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 8.2e-143 510.8 332 77.7
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.2e-141 506.9 338 76.6
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 6.5e-140 501.1 332 76.2
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 2.5e-139 499.2 335 75.8
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 6.7e-137 491.1 339 75.8
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 6.7e-137 491.1 342 74.6
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 5.3e-134 481.5 336 73.8
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 1.4e-131 473.4 337 73.0
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 2.5e-131 472.6 336 73.2
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 1.2e-130 470.3 336 73.2
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 1.0e-129 467.2 332 72.0
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 1.4e-129 466.8 330 73.0
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 3.9e-129 465.3 337 72.4
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 6.7e-129 464.5 338 70.7
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 1.1e-128 463.8 338 70.7
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 2.0e-128 463.0 338 70.1
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 2.0e-128 463.0 338 70.7
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 4.4e-128 461.8 333 73.0
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 7.4e-128 461.1 339 72.0
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 9.7e-128 460.7 343 73.5
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 1.7e-127 459.9 330 71.5
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 1.7e-127 459.9 339 71.4
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 6.3e-127 458.0 338 71.9
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 8.2e-127 457.6 337 71.5
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 1.1e-126 457.2 338 69.2
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.4e-126 456.8 337 71.5
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.8e-126 456.4 337 71.5
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 4.1e-126 455.3 337 72.1
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 4.1e-126 455.3 336 68.2
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 5.3e-126 454.9 345 70.1
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 9.1e-126 454.1 338 70.7
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 1.2e-125 453.8 332 69.3
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 1.2e-125 453.8 338 71.3
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 1.6e-125 453.4 338 68.9
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 2.6e-125 452.6 338 69.5
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 7.7e-125 451.1 338 68.6
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 1.0e-124 450.7 338 68.0
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.3e-124 450.3 338 71.0
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 1.7e-124 449.9 329 72.0
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 2.2e-124 449.5 338 70.4
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 2.9e-124 449.1 338 67.5
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 2.9e-124 449.1 334 68.9
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 6.5e-124 448.0 338 70.7
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 3.2e-123 445.7 332 72.3
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 5.5e-123 444.9 338 68.3
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 7.2e-123 444.5 338 66.6
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 7.2e-123 444.5 336 67.6
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 1.2e-122 443.7 338 68.9
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.7e-122 442.6 323 72.4
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 4.7e-122 441.8 337 70.6
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 6.1e-122 441.4 335 70.7
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 8.0e-122 441.0 338 68.3
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 1.4e-121 440.3 338 67.5
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 2.3e-121 439.5 333 67.9
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 3.0e-121 439.1 335 70.1
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 4.0e-121 438.7 329 69.9
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 6.7e-121 438.0 338 67.8
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 8.8e-121 437.6 337 67.7
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 1.5e-120 436.8 337 68.2
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 1.5e-120 436.8 335 67.8
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 2.0e-120 436.4 357 67.5
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 3.3e-120 435.6 339 68.1
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 4.4e-120 435.3 384 62.0
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 7.5e-120 434.5 338 68.6
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 1.3e-119 433.7 338 67.5
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 1.7e-119 433.3 338 68.3
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 7.0e-118 427.9 340 67.4
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 1.2e-117 427.2 334 66.8
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.2e-117 427.2 336 67.3
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 1.6e-117 426.8 349 67.9
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 2.0e-117 426.4 338 66.6
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 4.5e-117 425.2 334 66.5
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 4.5e-117 425.2 342 67.0
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 4.5e-117 425.2 329 67.5
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 5.9e-117 424.9 338 67.2
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 7.7e-117 424.5 334 66.5
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.3e-116 423.7 331 67.1
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.3e-116 423.7 331 67.1
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.7e-116 423.3 336 66.7
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 8.5e-116 421.0 338 66.3
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 1.1e-115 420.6 338 66.3
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.9e-115 419.9 338 66.3
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 7.2e-115 417.9 334 65.3
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 3.6e-114 415.6 338 66.6
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 8.0e-114 414.5 339 64.0
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 3.0e-113 412.5 355 61.4
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 9.8e-112 407.5 338 65.7
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.3e-111 407.1 336 65.2
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 1.3e-111 407.1 322 64.0
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.8e-111 406.0 360 63.1
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.8e-111 405.2 336 64.3
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 6.3e-111 404.8 335 64.8
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 2.4e-110 402.9 334 62.0
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.9e-107 393.3 353 59.8
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.9e-107 393.3 353 59.8
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 4.2e-107 392.1 358 61.5
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 1.6e-106 390.2 337 61.1
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 8.9e-105 384.4 351 62.7
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 9.8e-104 380.9 351 62.7
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 4.1e-102 375.6 339 58.7
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 7.0e-102 374.8 286 69.6
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 8.0e-98 361.3 341 58.9
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 5.2e-97 358.6 332 62.0
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 2.6e-96 356.3 268 71.3
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 6.8e-89 331.6 345 53.9
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.5e-88 330.5 342 55.3
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 2.6e-88 329.7 215 78.1
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 2.3e-81 306.6 327 55.7
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.1e-78 297.7 246 62.6
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 1.3e-76 290.8 192 77.6
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.9e-75 287.0 235 66.8
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 3.4e-72 276.2 352 47.4
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.3e-71 274.2 265 60.0
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 2.5e-67 260.0 265 54.0
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 1.3e-60 237.7 185 62.7
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 3.9e-60 236.1 380 43.9
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 4.0e-57 226.1 360 42.2
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 3.2e-54 216.5 350 39.4
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.1e-53 213.8 360 40.8
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 1.1e-51 208.0 365 40.8
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.9e-51 207.2 216 54.2
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 3.8e-47 193.0 214 53.7
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 4.6e-45 186.0 174 51.1
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 5.7e-43 179.1 368 36.4
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.8e-36 157.5 363 34.4
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 2.8e-34 150.2 348 36.2
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.2e-26 124.0 121 62.8
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 1.5e-24 117.9 348 31.9
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 2.0e-24 117.5 90 60.0
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 4.5e-24 116.3 147 44.2
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 1.3e-23 114.8 106 52.8
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 1.7e-23 114.4 87 59.8
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 2.2e-23 114.0 84 65.5
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 1.9e-22 110.9 87 58.6
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 2.5e-22 110.5 189 40.7
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.0e-16 90.9 106 58.5
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 4.5e-16 89.7 80 57.5
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 5.9e-16 89.4 149 34.9
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 1.0e-15 88.6 54 74.1
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 2.5e-14 84.0 80 50.0
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.1e-13 80.9 74 59.5
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 3.6e-13 80.1 148 31.8
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 2.2e-10 70.9 40 82.5
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.2e-10 70.9 172 30.8
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.2e-08 65.1 42 69.0
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 3.5e-08 63.5 53 52.8


User provided reference genes

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