Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 3.9e-111 404.8 206 100.0
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 5.4e-105 384.4 201 98.5
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 4.8e-101 371.3 205 92.2
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 9.9e-99 363.6 198 94.4
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 6.4e-98 360.9 201 92.5
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 5.1e-95 351.3 192 93.8
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 9.9e-91 337.0 197 87.8
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 1.9e-86 322.8 196 82.7
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 1.3e-85 320.1 189 84.1
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 1.3e-85 320.1 189 84.1
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 2.1e-85 319.3 192 83.9
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 3.7e-85 318.5 194 84.5
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 8.2e-85 317.4 193 83.4
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 1.1e-84 317.0 191 84.3
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 1.4e-84 316.6 191 82.2
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 6.9e-84 314.3 196 80.6
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 6.9e-84 314.3 194 80.9
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 7.6e-83 310.8 194 81.4
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 1.0e-82 310.5 191 81.2
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 1.0e-82 310.5 198 79.3
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 1.3e-82 310.1 191 81.2
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 1.3e-82 310.1 196 79.1
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 1.7e-82 309.7 191 80.6
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 1.7e-82 309.7 197 79.2
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 2.2e-82 309.3 198 78.8
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 2.9e-82 308.9 196 80.1
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 2.9e-82 308.9 194 78.9
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 3.8e-82 308.5 194 79.9
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 3.8e-82 308.5 198 79.3
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 4.9e-82 308.1 195 80.5
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 1.1e-81 307.0 191 81.2
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 1.4e-81 306.6 191 81.2
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 1.4e-81 306.6 197 76.6
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 2.5e-81 305.8 193 78.8
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 3.2e-81 305.4 194 79.4
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 7.1e-81 304.3 192 80.7
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 1.2e-80 303.5 198 76.3
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 2.1e-80 302.8 194 76.8
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 2.7e-80 302.4 205 74.1
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 3.5e-80 302.0 192 80.7
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 6.0e-80 301.2 195 77.4
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 7.9e-80 300.8 197 77.2
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 1.8e-79 299.7 191 79.6
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 1.8e-79 299.7 200 77.0
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 2.3e-79 299.3 196 79.1
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 2.3e-79 299.3 191 78.0
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 3.9e-79 298.5 194 78.9
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 5.1e-79 298.1 205 73.2
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 5.1e-79 298.1 196 77.6
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 8.7e-79 297.4 188 78.2
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 1.1e-78 297.0 195 77.4
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.5e-78 296.6 187 78.1
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.5e-78 296.6 187 78.1
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 1.9e-78 296.2 193 77.2
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 1.9e-78 296.2 188 77.7
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.3e-78 295.4 187 77.5
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 4.3e-78 295.0 188 80.3
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 5.7e-78 294.7 186 80.1
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 5.7e-78 294.7 200 76.5
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 9.7e-78 293.9 193 75.6
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 1.6e-77 293.1 188 78.7
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 2.1e-77 292.7 188 78.2
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 2.1e-77 292.7 188 78.2
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 2.8e-77 292.4 197 74.6
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 3.7e-77 292.0 218 70.6
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 4.8e-77 291.6 190 77.4
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 4.8e-77 291.6 188 77.7
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 6.3e-77 291.2 190 77.9
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 8.2e-77 290.8 188 77.7
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 1.1e-76 290.4 188 77.7
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 2.4e-76 289.3 188 75.5
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 4.1e-76 288.5 178 79.8
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 6.9e-76 287.7 194 73.2
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 6.9e-76 287.7 186 80.6
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 1.2e-75 287.0 196 76.5
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 2.0e-75 286.2 204 75.5
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 3.4e-75 285.4 190 75.3
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 1.0e-74 283.9 255 61.2
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 1.3e-74 283.5 244 63.1
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 3.8e-74 282.0 204 73.5
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 1.4e-73 280.0 194 73.7
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 1.9e-73 279.6 188 77.7
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 5.5e-73 278.1 190 74.2
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 9.3e-73 277.3 188 75.0
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 2.7e-72 275.8 188 74.5
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 1.0e-71 273.9 204 73.5
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.4e-68 263.5 190 68.9
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 1.5e-67 260.0 163 79.1
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 4.2e-65 251.9 188 68.6
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 1.6e-64 250.0 160 76.9
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 1.1e-60 237.3 195 64.1
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 3.1e-60 235.7 166 75.3
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 5.3e-60 235.0 194 66.0
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 6.9e-60 234.6 193 66.3
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 1.0e-58 230.7 148 77.0
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 8.5e-58 227.6 185 63.2
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 9.4e-57 224.2 187 64.7
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 2.6e-54 216.1 141 78.7
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 2.2e-50 203.0 136 75.0
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 1.2e-48 197.2 110 89.1
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 2.7e-48 196.1 251 50.6
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 2.3e-47 193.0 126 81.0
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 6.7e-47 191.4 112 85.7
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.2e-46 190.7 113 83.2
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 3.3e-46 189.1 138 69.6
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 9.7e-46 187.6 138 71.0
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 1.6e-40 170.2 198 50.5
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 1.4e-39 167.2 200 48.5
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 2.2e-37 159.8 84 92.9
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 6.3e-37 158.3 105 76.2
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 1.1e-36 157.5 114 71.9
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 3.1e-36 156.0 116 69.0
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 2.9e-34 149.4 138 58.7
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 9.5e-33 144.4 140 54.3
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 8.6e-26 121.3 141 53.9
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 1.0e-23 114.4 132 50.0
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 7.5e-22 108.2 62 87.1
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 1.1e-20 104.4 202 35.6
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 3.2e-20 102.8 81 61.7
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 9.5e-17 91.3 81 58.0
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 7.0e-12 75.1 109 45.0
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 4.6e-11 72.4 56 64.3
SalBow1G6941 Salvia bowleyana HOM05D000780 ORTHO05D008187 4.3e-09 65.9 54 59.3
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 1.1e-07 61.2 52 55.8


User provided reference genes

Program Settings