Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 4.1e-220 767.7 372 100.0
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.1e-212 743.0 372 96.8
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 2.6e-190 668.7 372 86.3
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.1e-185 653.3 420 76.9
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 1.9e-177 625.9 351 87.2
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 6.2e-168 594.3 361 80.6
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 4.6e-163 578.2 366 74.9
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 6.3e-160 567.8 376 72.6
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 2.0e-158 562.8 378 72.2
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 1.7e-157 559.7 368 72.6
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 5.3e-151 538.1 366 70.8
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 5.3e-151 538.1 358 71.2
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 6.9e-151 537.7 372 70.7
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 6.5e-149 531.2 366 69.4
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 6.1e-147 524.6 354 75.7
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 3.9e-146 521.9 364 69.5
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 3.9e-146 521.9 362 69.1
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.1e-143 513.8 364 66.2
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 6.9e-143 511.1 360 66.7
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 4.5e-142 508.4 359 67.4
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 7.7e-142 507.7 365 69.0
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 2.2e-141 506.1 359 67.4
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 2.2e-141 506.1 363 65.6
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 5.0e-141 505.0 359 67.7
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 8.5e-141 504.2 359 67.7
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 1.4e-140 503.4 360 66.7
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 3.2e-140 502.3 360 66.7
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.6e-139 500.0 357 64.7
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 3.6e-139 498.8 369 64.2
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 3.6e-139 498.8 438 59.4
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 6.1e-139 498.0 359 64.6
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 2.3e-138 496.1 360 66.4
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 3.9e-138 495.4 360 65.0
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 5.2e-138 495.0 365 66.6
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 6.7e-138 494.6 357 67.8
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 6.7e-138 494.6 374 64.7
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 6.7e-138 494.6 374 64.7
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 8.8e-138 494.2 358 65.4
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 1.1e-137 493.8 359 64.1
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 1.5e-137 493.4 353 64.6
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 2.0e-137 493.0 491 53.6
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 2.6e-137 492.7 359 66.6
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.3e-137 492.3 367 65.1
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 4.4e-137 491.9 364 63.7
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 7.4e-137 491.1 356 65.2
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 7.4e-137 491.1 359 64.3
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.7e-136 490.0 363 65.0
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 1.7e-136 490.0 356 67.1
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.8e-136 489.2 355 65.1
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 3.7e-136 488.8 332 71.4
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.1e-135 487.3 367 63.2
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 1.1e-135 487.3 364 64.8
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 1.4e-135 486.9 360 65.6
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 2.4e-135 486.1 358 65.1
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 5.3e-135 485.0 360 64.7
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 9.1e-135 484.2 367 62.7
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 9.1e-135 484.2 365 63.8
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 1.2e-134 483.8 361 62.9
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 3.5e-134 482.3 358 63.4
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 3.5e-134 482.3 359 63.8
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 1.3e-133 480.3 363 64.2
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 1.3e-133 480.3 358 63.4
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 6.5e-133 478.0 332 66.9
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 3.2e-132 475.7 357 62.5
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 2.1e-131 473.0 362 63.3
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 1.0e-130 470.7 368 63.0
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 1.2e-129 467.2 432 55.6
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 3.3e-129 465.7 365 64.1
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 5.7e-129 464.9 363 62.3
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 5.7e-129 464.9 370 60.3
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 7.5e-129 464.5 368 62.5
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 9.7e-129 464.2 359 61.6
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 1.3e-128 463.8 356 61.5
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 2.8e-128 462.6 355 62.5
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 3.7e-128 462.2 355 63.1
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 6.3e-128 461.5 356 62.4
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 1.1e-127 460.7 360 60.6
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 1.1e-127 460.7 357 62.5
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 1.8e-127 459.9 362 61.0
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 4.1e-127 458.8 356 62.4
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 7.0e-127 458.0 360 60.0
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 9.1e-127 457.6 360 61.4
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 9.1e-127 457.6 360 61.4
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 1.6e-126 456.8 359 61.3
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 2.7e-126 456.1 357 64.1
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 2.7e-126 456.1 359 63.5
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 1.1e-124 450.7 360 61.9
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 1.9e-124 449.9 360 60.8
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 7.2e-124 448.0 360 61.4
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 9.4e-124 447.6 359 61.0
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 1.2e-123 447.2 356 60.4
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 4.7e-123 445.3 359 61.0
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 2.2e-117 426.4 404 54.5
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 6.5e-117 424.9 296 68.9
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.3e-112 410.6 359 58.5
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 2.4e-111 406.4 342 54.7
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 5.4e-111 405.2 364 55.5
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 7.8e-110 401.4 295 65.1
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 6.6e-109 398.3 368 53.8
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 1.9e-108 396.7 357 56.9
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 9.5e-108 394.4 238 75.6
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 3.0e-106 389.4 362 50.8
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 4.4e-105 385.6 385 50.6
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 7.5e-105 384.8 336 58.0
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 8.3e-104 381.3 359 54.9
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 7.0e-103 378.3 249 72.3
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 6.0e-94 348.6 295 57.6
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 7.8e-94 348.2 296 59.8
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 2.5e-92 343.2 422 42.2
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 3.4e-89 332.8 213 72.3
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 5.8e-89 332.0 206 74.3
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 2.0e-81 307.0 359 46.0
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 5.8e-81 305.4 376 41.2
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 9.9e-81 304.7 415 39.5
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 2.7e-78 296.6 154 86.4
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 5.2e-74 282.3 364 40.4
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 1.3e-69 267.7 234 56.4
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 8.4e-64 248.4 132 86.4
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 4.6e-62 242.7 128 82.8
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 3.4e-57 226.5 264 47.3
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 3.4e-57 226.5 264 47.3
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 2.4e-42 177.2 209 46.4
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 4.1e-42 176.4 209 46.4
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 4.5e-41 172.9 208 46.6
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 7.6e-41 172.2 159 56.0
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 3.8e-40 169.9 281 33.5
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 4.6e-38 162.9 83 85.5
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 1.8e-29 134.4 75 84.0
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 5.3e-26 122.9 129 49.6
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.5e-25 121.3 147 49.0
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.8e-21 107.8 122 49.2
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 8.2e-19 99.0 205 32.7
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 7.7e-17 92.4 102 50.0


User provided reference genes

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