Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002396g0020 Nicotiana tabacum HOM05D003562 ORTHO05D004074 2.5e-175 618.6 302 100.0
Nitab4.5_0004377g0020 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.1e-130 470.3 433 61.0
Nitab4.5_0002396g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 3.1e-109 399.1 425 53.4
PGSC0003DMG400006062 Solanum tuberosum HOM05D003562 ORTHO05D004074 5.0e-107 391.7 417 51.8
Peaxi162Scf00125g00231 Petunia axillaris HOM05D003562 ORTHO05D004074 1.2e-105 387.1 397 52.9
PGSC0003DMG400042505 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.0e-104 384.0 423 50.8
PGSC0003DMG400039163 Solanum tuberosum HOM05D003562 ORTHO05D004074 3.0e-104 382.5 418 51.9
Peaxi162Scf00025g02824 Petunia axillaris HOM05D003562 ORTHO05D004074 2.0e-103 379.8 425 50.4
PGSC0003DMG400006063 Solanum tuberosum HOM05D003562 ORTHO05D004074 7.4e-103 377.9 418 52.4
CAN.G557.9 Capsicum annuum HOM05D003562 ORTHO05D004074 3.7e-102 375.6 425 50.4
Solyc11g005230.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 7.7e-100 367.9 417 50.4
Sopen11g001240 Solanum pennellii HOM05D003562 ORTHO05D004074 7.7e-100 367.9 417 50.4
Sopen11g001250 Solanum pennellii HOM05D003562 ORTHO05D004074 1.0e-96 357.5 417 49.6
Solyc11g005240.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 7.5e-95 351.3 411 49.4
CAN.G557.10 Capsicum annuum HOM05D003562 ORTHO05D004074 5.4e-93 345.1 422 49.1
CAN.G341.6 Capsicum annuum HOM05D003562 ORTHO05D002248 5.2e-88 328.6 307 59.9
Nitab4.5_0002396g0050 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.3e-62 244.2 377 42.4
PGSC0003DMG400006032 Solanum tuberosum HOM05D003562 ORTHO05D004074 8.4e-54 214.9 163 66.3
Nitab4.5_0004377g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 5.6e-50 202.2 127 77.2
Sopen11g001180 Solanum pennellii HOM05D003562 ORTHO05D004074 2.8e-49 199.9 411 34.5
Nitab4.5_0004377g0030 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.8e-48 197.2 166 61.4
Dinv02658 Davidia involucrata HOM05D003562 ORTHO05D004074 4.4e-47 192.6 331 36.0
Solyc06g005930.3 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.4e-45 187.6 393 32.3
QL06p011807 Quercus lobata HOM05D003562 ORTHO05D004074 4.6e-44 182.6 411 31.9
vmacro18374 Vaccinium macrocarpon HOM05D000884 ORTHO05D002127 2.3e-43 180.3 445 29.7
Rhsim08G0039700 Rhododendron simsii HOM05D000884 ORTHO05D002127 1.1e-40 171.4 439 29.4
Solyc11g005180.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 6.9e-40 168.7 365 32.9
MBI18_g45417_MAGBIO Magnolia biondii HOM05D003562 ORTHO05D004074 3.9e-35 152.9 373 29.5
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 1.1e-34 151.4 446 28.0
Dinv33286 Davidia involucrata HOM05D003562 ORTHO05D004074 4.6e-28 129.4 261 36.4
Thecc.07G145200 Theobroma cacao HOM05D003562 ORTHO05D004074 2.6e-23 113.6 145 42.8
Thecc.07G145100 Theobroma cacao HOM05D003562 ORTHO05D004074 1.7e-22 110.9 89 59.6
TWI32G0119 Tripterygium wilfordii HOM05D003562 ORTHO05D004074 6.5e-22 109.0 135 40.0
COL.COLO4_07204 Corchorus olitorius HOM05D003562 ORTHO05D004074 1.4e-21 107.8 139 39.6
Thecc.10G162500 Theobroma cacao HOM05D003562 ORTHO05D004074 3.2e-21 106.7 135 40.7
Cpa.g.sc30.42 Carica papaya HOM05D003562 ORTHO05D004074 7.1e-21 105.5 135 40.7
Duzib114G0768 Durio zibethinus HOM05D003562 ORTHO05D004074 7.1e-21 105.5 135 39.3
Duzib128G0310 Durio zibethinus HOM05D003562 ORTHO05D004074 9.3e-21 105.1 139 38.1
CANSAT35G1715 Cannabis sativa HOM05D003562 ORTHO05D004074 2.1e-20 104.0 135 42.2
Gohir.D10G190150 Gossypium hirsutum HOM05D003562 ORTHO05D004074 2.1e-20 104.0 139 38.8
Gohir.D10G190200 Gossypium hirsutum HOM05D003562 ORTHO05D004074 2.1e-20 104.0 139 38.8
Thhalv10014282m.g Eutrema salsugineum HOM05D003562 ORTHO05D004074 3.5e-20 103.2 139 38.1
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 4.6e-20 102.8 136 37.5
Aqoxy1G00347 Aquilegia oxysepala HOM05D003562 ORTHO05D004074 4.6e-20 102.8 147 38.8
THA.LOC104807160 Tarenaya hassleriana HOM05D003562 ORTHO05D004074 6.0e-20 102.4 135 39.3
Gohir.A10G183700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 7.9e-20 102.1 139 38.1
Gohir.D10G190700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 7.9e-20 102.1 139 38.1
Gorai.011G213800 Gossypium raimondii HOM05D003562 ORTHO05D004074 7.9e-20 102.1 139 38.1
Sp6g21260 Schrenkiella parvula HOM05D003562 ORTHO05D004074 1.0e-19 101.7 135 37.8
BcaB05g22520 Brassica carinata HOM05D003562 ORTHO05D004074 1.3e-19 101.3 135 38.5
BcaC04g19758 Brassica carinata HOM05D003562 ORTHO05D004074 1.3e-19 101.3 135 37.0
A10p16750 Brassica napus HOM05D003562 ORTHO05D004074 1.3e-19 101.3 135 37.8
C09p51940 Brassica napus HOM05D003562 ORTHO05D004074 1.3e-19 101.3 135 37.0
BolC9t58057H Brassica oleracea HOM05D003562 ORTHO05D004074 1.3e-19 101.3 135 37.0
Manes.04G160200 Manihot esculenta HOM05D003562 ORTHO05D004074 1.3e-19 101.3 135 38.5
TAR636G0244 Trochodendron aralioides HOM05D003562 ORTHO05D004074 1.3e-19 101.3 135 40.0
QL04p014940 Quercus lobata HOM05D003562 ORTHO05D004074 1.8e-19 100.9 135 40.7
TAR636G1695 Trochodendron aralioides HOM05D003562 ORTHO05D004074 1.8e-19 100.9 135 39.3
arahy.Tifrunner.gnm1.ann1.T72YSL Arachis hypogaea HOM05D003562 ORTHO05D004074 2.3e-19 100.5 134 38.8
Potri.001G026700 Populus trichocarpa HOM05D003562 ORTHO05D004074 2.3e-19 100.5 139 38.1
QL04p014579 Quercus lobata HOM05D003562 ORTHO05D004074 2.3e-19 100.5 135 40.7
BcaB08g36248 Brassica carinata HOM05D003562 ORTHO05D004074 3.0e-19 100.1 136 40.4
BolC2t11811H Brassica oleracea HOM05D003562 ORTHO05D004074 5.1e-19 99.4 127 39.4
PSO384G3387 Papaver somniferum HOM05D003562 ORTHO05D004074 5.1e-19 99.4 151 37.1
BcaB07g34157 Brassica carinata HOM05D003562 ORTHO05D004074 6.7e-19 99.0 141 36.9
CARHR273020 Cardamine hirsuta HOM05D003562 ORTHO05D004074 6.7e-19 99.0 136 39.0
Rhsim07G0066600 Rhododendron simsii HOM05D003562 ORTHO05D004074 6.7e-19 99.0 140 36.4
RhsimUnG0111400 Rhododendron simsii HOM05D003562 ORTHO05D004074 6.7e-19 99.0 140 36.4
Solyc11g005260.2 Solanum lycopersicum HOM05D003562 ORTHO05D004074 6.7e-19 99.0 171 34.5
TAR636G1892 Trochodendron aralioides HOM05D003562 ORTHO05D004074 6.7e-19 99.0 133 39.1
AUR62037195 Chenopodium quinoa HOM05D003562 ORTHO05D004074 1.1e-18 98.2 158 35.4
TPR.G17800 Trifolium pratense HOM05D003562 ORTHO05D004074 1.1e-18 98.2 178 34.8
TAR636G2742 Trochodendron aralioides HOM05D003562 ORTHO05D004074 1.1e-18 98.2 135 38.5
Ca_27897_v3 Cicer arietinum L. HOM05D003562 ORTHO05D004074 1.5e-18 97.8 134 39.6
Sopen11g001270 Solanum pennellii HOM05D003562 ORTHO05D004074 1.5e-18 97.8 171 33.9
AL8G36050 Arabidopsis lyrata HOM05D003562 ORTHO05D004074 1.9e-18 97.4 136 37.5
C02p12410 Brassica napus HOM05D003562 ORTHO05D004074 1.9e-18 97.4 135 37.8
Hma1.2p1_1396F.1_g280630 Hydrangea macrophylla HOM05D003562 ORTHO05D004074 1.9e-18 97.4 139 37.4
Phvul.005G028600 Phaseolus vulgaris HOM05D003562 ORTHO05D004074 1.9e-18 97.4 134 41.0
Prupe.7G009600 Prunus persica HOM05D003562 ORTHO05D004074 1.9e-18 97.4 135 38.5
BraA10t43756Z Brassica rapa HOM05D003562 ORTHO05D004074 2.5e-18 97.1 140 38.6
Dinv09273 Davidia involucrata HOM05D003562 ORTHO05D004074 2.5e-18 97.1 139 37.4
vmacro13748 Vaccinium macrocarpon HOM05D003562 ORTHO05D004074 2.5e-18 97.1 141 34.0
CDE01G0515 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 3.3e-18 96.7 139 36.7
Ciclev10029023m.g Citrus clementina HOM05D003562 ORTHO05D004074 3.3e-18 96.7 135 37.8
Glyma.11G154000 Glycine max HOM05D003562 ORTHO05D004074 3.3e-18 96.7 134 38.8
Potri.003G198000 Populus trichocarpa HOM05D003562 ORTHO05D004074 3.3e-18 96.7 135 38.5
Potri.T125306 Populus trichocarpa HOM05D003562 ORTHO05D004074 3.3e-18 96.7 135 37.8
Medtr3g017470 Medicago truncatula HOM05D003562 ORTHO05D004074 4.3e-18 96.3 134 39.6
Sabra03G0147400 Salix brachista HOM05D003562 ORTHO05D004074 4.3e-18 96.3 140 36.4
Sed0007359 Sechium edule HOM05D003562 ORTHO05D004074 4.3e-18 96.3 187 29.9
PGSC0003DMG400016924 Solanum tuberosum HOM05D003562 ORTHO05D051166 4.3e-18 96.3 72 62.5
AT5G59560 Arabidopsis thaliana HOM05D003562 ORTHO05D004074 5.7e-18 95.9 136 36.8
VMungo1080G1790 Vigna mungo HOM05D003562 ORTHO05D004074 5.7e-18 95.9 134 39.6
FAN04G2150 Fragaria x ananassa HOM05D003562 ORTHO05D004074 7.4e-18 95.5 135 37.8
TAR636G2713 Trochodendron aralioides HOM05D003562 ORTHO05D004074 7.4e-18 95.5 136 36.0
Eucgr.G03239 Eucalyptus grandis HOM05D003562 ORTHO05D004074 9.6e-18 95.1 144 37.5
Sc10g0004400 Simmondsia chinensis HOM05D003562 ORTHO05D004074 9.6e-18 95.1 135 36.3
BcaC03g14002 Brassica carinata HOM05D003562 ORTHO05D004074 1.3e-17 94.7 135 37.0
BolC2t07341H Brassica oleracea HOM05D003562 ORTHO05D004074 1.3e-17 94.7 135 37.0
CSS0045780 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 1.3e-17 94.7 153 36.6
FvH4_5g25300 Fragaria vesca HOM05D003562 ORTHO05D004074 1.3e-17 94.7 135 37.8
FAN18G1494 Fragaria x ananassa HOM05D003562 ORTHO05D004074 1.3e-17 94.7 135 37.8
Nn2g14890 Nelumbo nucifera HOM05D003562 ORTHO05D004074 1.3e-17 94.7 139 35.3
Atru.chr12.1362 Acer truncatum HOM05D003562 ORTHO05D004074 1.6e-17 94.4 135 35.6
Actinidia06246 Actinidia chinensis HOM05D003562 ORTHO05D004074 1.6e-17 94.4 139 36.0
Glyma.06G083300 Glycine max HOM05D003562 ORTHO05D004074 1.6e-17 94.4 134 38.1
Peaxi162Scf00025g00152 Petunia axillaris HOM05D003562 ORTHO05D004074 1.6e-17 94.4 139 38.1
Peaxi162Scf00128g00115 Petunia axillaris HOM05D003562 ORTHO05D004074 1.6e-17 94.4 139 38.1
Ah.04g155210 Amaranthus hybridus HOM05D003562 ORTHO05D004074 2.1e-17 94.0 140 35.7
Ah.04g155220 Amaranthus hybridus HOM05D003562 ORTHO05D004074 2.1e-17 94.0 140 35.7
A02p07060 Brassica napus HOM05D003562 ORTHO05D004074 2.1e-17 94.0 135 36.3
BraA02t05786Z Brassica rapa HOM05D003562 ORTHO05D004074 2.1e-17 94.0 135 36.3
Lalb_Chr03g0032801 Lupinus albus HOM05D003562 ORTHO05D004074 2.1e-17 94.0 131 39.7
HPP92_020796 Vanilla planifolia HOM05D003562 ORTHO05D004074 2.1e-17 94.0 140 39.3
Cfa010886 Carpinus fangiana HOM05D003562 ORTHO05D004074 2.8e-17 93.6 135 35.6
Lj3g0004154 Lotus japonicus HOM05D003562 ORTHO05D004074 2.8e-17 93.6 134 38.8
PGR142G2845 Punica granatum HOM05D003562 ORTHO05D004074 2.8e-17 93.6 139 38.1
CSS0041933 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 3.7e-17 93.2 153 36.6
CAN.G1074.6 Capsicum annuum HOM05D003562 ORTHO05D004074 3.7e-17 93.2 171 33.9
Haze_03073 Corylus avellana HOM05D003562 ORTHO05D004074 3.7e-17 93.2 135 35.6
FAN13G2751 Fragaria x ananassa HOM05D003562 ORTHO05D004074 3.7e-17 93.2 135 37.0
Carub.0008s2023 Capsella rubella HOM05D003562 ORTHO05D004074 4.8e-17 92.8 136 36.8
CiPaw.13G012700 Carya illinoinensis HOM05D003562 ORTHO05D004074 4.8e-17 92.8 135 37.0
CsaV3_5G024840 Cucumis sativus L. HOM05D003562 ORTHO05D004074 4.8e-17 92.8 135 37.0
PSO339G2283 Papaver somniferum HOM05D003562 ORTHO05D004074 4.8e-17 92.8 143 37.1
SHI01272 Sapria himalayana HOM05D003562 ORTHO05D004074 6.3e-17 92.4 139 37.4
HPP92_020694 Vanilla planifolia HOM05D003562 ORTHO05D004074 6.3e-17 92.4 140 36.4
ClCG01G007760 Citrullus lanatus HOM05D003562 ORTHO05D004074 1.1e-16 91.7 135 37.0
CSS0019906 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 1.4e-16 91.3 153 35.9
CDE12G0865 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 1.4e-16 91.3 143 38.5
DCAR_022850 Daucus carota HOM05D003562 ORTHO05D004074 1.4e-16 91.3 159 33.3
Psat5g217800 Pisum sativum HOM05D003562 ORTHO05D004074 1.8e-16 90.9 146 37.7
MELO3C005120.2 Cucumis melo HOM05D003562 ORTHO05D004074 2.4e-16 90.5 135 37.0
SGA_v2.0_scaffold71G23983 Striga asiatica HOM05D003562 ORTHO05D004074 2.4e-16 90.5 139 34.5
MSTRG.16988 Avicennia marina HOM05D003562 ORTHO05D004074 3.1e-16 90.1 135 36.3
SalBow7G2199 Salvia bowleyana HOM05D003562 ORTHO05D004074 5.3e-16 89.4 144 34.0
unitig_747.g21707 Utricularia gibba HOM05D003562 ORTHO05D004074 5.3e-16 89.4 168 30.4
Cc01_g07880 Coffea canephora HOM05D003562 ORTHO05D004074 6.9e-16 89.0 139 35.3
CiPaw.14G007100 Carya illinoinensis HOM05D003562 ORTHO05D004074 1.5e-15 87.8 136 33.8
Cc00_g22970 Coffea canephora HOM05D003562 ORTHO05D004074 1.5e-15 87.8 139 34.5
Lsat_1_v5_gn_3_4941 Lactuca sativa HOM05D003562 ORTHO05D004074 2.0e-15 87.4 125 32.8
MD06G1045900 Malus domestica HOM05D003562 ORTHO05D004074 2.6e-15 87.0 135 35.6
Solyc03g071623.1 Solanum lycopersicum HOM05D003562 ORTHO05D051166 2.6e-15 87.0 72 63.9
CARHR266600 Cardamine hirsuta HOM05D003562 ORTHO05D004074 4.5e-15 86.3 124 37.9
MD02G1270100 Malus domestica HOM05D003562 ORTHO05D004074 4.5e-15 86.3 135 34.1
BraA02t08793Z Brassica rapa HOM05D003562 ORTHO05D004074 5.9e-15 85.9 123 38.2
Lj8P275T68 Lonicera japonica HOM05D003562 ORTHO05D004074 1.3e-14 84.7 139 31.7
Oeu015695.4 Olea europaea HOM05D003562 ORTHO05D004074 1.7e-14 84.3 135 31.9
Nitab4.5_0000320g0220 Nicotiana tabacum HOM05D003562 ORTHO05D004074 2.2e-14 84.0 139 33.8
Lsat_1_v5_gn_4_44700 Lactuca sativa HOM05D003562 ORTHO05D004074 2.9e-14 83.6 129 30.2
BolC2t11816H Brassica oleracea HOM05D003562 ORTHO05D004074 3.8e-14 83.2 127 36.2
ECA233G2618 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.8e-14 83.2 135 32.6
unitig_26.g9509 Utricularia gibba HOM05D003562 ORTHO05D004074 5.0e-14 82.8 141 36.9
Nitab4.5_0010864g0010 Nicotiana tabacum HOM05D003562 ORTHO05D004074 1.1e-13 81.6 133 33.8
Migut.N01839 Erythranthe guttata HOM05D003562 ORTHO05D004074 1.9e-13 80.9 139 31.7
PGSC0003DMG400006036 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.9e-13 80.9 116 41.4
GSVIVG01037424001 Vitis vinifera HOM05D003562 ORTHO05D004074 1.9e-13 80.9 135 34.1
ATR0763G113 Amborella trichopoda HOM05D003562 ORTHO05D004074 4.2e-13 79.7 135 31.9
Lsat_1_v5_gn_6_15520 Lactuca sativa HOM05D003562 ORTHO05D004074 9.3e-13 78.6 134 31.3
HanXRQChr12g0359541 Helianthus annuus HOM05D003562 ORTHO05D004074 1.6e-12 77.8 134 31.3
ECA247G0148 Erigeron canadensis HOM05D003562 ORTHO05D004074 1.3e-11 74.7 135 31.1
Ah.10g030580 Amaranthus hybridus HOM05D003562 ORTHO05D004074 1.8e-11 74.3 111 35.1
Actinidia10167 Actinidia chinensis HOM05D003562 ORTHO05D004074 3.9e-11 73.2 91 42.9
AUR62026879 Chenopodium quinoa HOM05D003562 ORTHO05D004074 1.1e-10 71.6 105 37.1
CANSAT01G2732 Cannabis sativa HOM05D003562 ORTHO05D004074 2.5e-10 70.5 98 40.8
HPP92_000706 Vanilla planifolia HOM05D003562 ORTHO05D004074 3.3e-10 70.1 140 30.0
CSS0043492 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 5.7e-10 69.3 146 32.2
PGSC0003DMG400009785 Solanum tuberosum HOM05D003562 ORTHO05D004074 5.7e-10 69.3 110 33.6
SEGI_35747 Sequoiadendron giganteum HOM05D003562 ORTHO05D004074 9.7e-10 68.6 141 28.4
HPP92_000641 Vanilla planifolia HOM05D003562 ORTHO05D004074 2.2e-09 67.4 102 38.2
CANSAT11G2347 Cannabis sativa HOM05D003562 ORTHO05D004074 2.8e-09 67.0 81 42.0
CANSAT11G2219 Cannabis sativa HOM05D003562 ORTHO05D004074 8.2e-09 65.5 97 39.2
TAR636G1190 Trochodendron aralioides HOM05D003562 ORTHO05D004074 8.2e-09 65.5 144 30.6
Zm00001eb188200 Zea mays HOM05D003562 ORTHO05D004074 2.4e-08 63.9 124 33.1
CDE12G0883 Ceratophyllum demersum HOM05D000824 ORTHO05D002221 4.1e-08 63.2 108 31.5
Mapoly0008s0158 Marchantia polymorpha HOM05D003562 ORTHO05D004074 9.0e-08 62.0 80 36.2
CANSAT11G1241 Cannabis sativa HOM05D003562 ORTHO05D004074 3.4e-07 60.1 97 40.2
AagrBONN_evm.TU.Sc2ySwM_362.1627 Anthoceros agrestis HOM05D003562 ORTHO05D004074 5.9e-07 59.3 93 36.6
Os05g0118000 Oryza sativa ssp. japonica HOM05D003562 ORTHO05D004074 5.9e-07 59.3 127 33.1
Pp3c25_14670 Physcomitrium patens HOM05D003562 ORTHO05D004074 2.2e-06 57.4 91 39.6


User provided reference genes

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