Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002344g0060 Nicotiana tabacum HOM05D003241 ORTHO05D003812 5.0e-120 434.5 224 100.0
Nitab4.5_0014335g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 6.6e-88 327.8 232 80.6
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 2.0e-68 263.1 238 67.2
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 7.5e-68 261.2 238 66.8
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 4.9e-67 258.5 240 65.0
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 3.2e-66 255.8 239 63.6
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 5.4e-66 255.0 240 64.6
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 9.2e-66 254.2 240 64.6
PGSC0003DMG400024746 Solanum tuberosum HOM05D003241 ORTHO05D003812 7.6e-60 234.6 217 65.9
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 4.6e-57 225.3 240 60.4
Peaxi162Scf00067g00244 Petunia axillaris HOM05D003241 ORTHO05D003812 6.2e-54 214.9 215 63.7
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 3.8e-51 205.7 246 55.3
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 2.4e-50 203.0 243 51.9
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 4.2e-50 202.2 249 51.0
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 9.3e-50 201.1 247 50.2
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 1.6e-49 200.3 240 52.1
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 6.0e-49 198.4 250 51.2
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 6.0e-49 198.4 242 54.5
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 7.8e-49 198.0 247 50.2
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 1.0e-48 197.6 262 48.5
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 2.3e-48 196.4 241 50.6
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 2.3e-48 196.4 247 49.4
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 2.3e-48 196.4 248 50.0
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 3.0e-48 196.1 265 48.3
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 3.0e-48 196.1 241 50.6
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 5.1e-48 195.3 246 49.6
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 5.1e-48 195.3 240 52.9
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 8.7e-48 194.5 248 50.4
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 8.7e-48 194.5 241 49.8
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 1.1e-47 194.1 241 50.6
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 1.1e-47 194.1 242 50.0
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 1.5e-47 193.7 254 48.8
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 1.9e-47 193.4 247 49.0
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 1.9e-47 193.4 247 49.0
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 1.9e-47 193.4 248 49.6
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 3.3e-47 192.6 250 51.2
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 4.3e-47 192.2 249 48.2
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 4.3e-47 192.2 252 47.2
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 4.3e-47 192.2 238 50.8
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 5.6e-47 191.8 253 48.6
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 5.6e-47 191.8 248 49.2
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 5.6e-47 191.8 246 49.2
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 7.3e-47 191.4 243 50.2
Solyc01g099380.4 Solanum lycopersicum HOM05D003241 ORTHO05D003812 9.6e-47 191.0 216 52.3
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 1.3e-46 190.7 256 47.3
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 1.3e-46 190.7 248 49.6
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 1.3e-46 190.7 248 49.6
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 1.3e-46 190.7 251 49.0
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 1.3e-46 190.7 254 48.0
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 1.3e-46 190.7 249 48.2
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 4.8e-46 188.7 248 50.8
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 6.2e-46 188.3 246 48.0
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 6.2e-46 188.3 248 50.0
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 8.1e-46 188.0 255 49.0
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 8.1e-46 188.0 255 47.5
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 1.8e-45 186.8 246 47.2
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 3.1e-45 186.0 259 47.1
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 4.0e-45 185.7 239 46.4
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 4.0e-45 185.7 263 47.1
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 5.3e-45 185.3 244 47.1
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 5.3e-45 185.3 241 47.7
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 5.3e-45 185.3 241 47.7
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 6.9e-45 184.9 249 49.0
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 6.9e-45 184.9 241 47.3
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 9.0e-45 184.5 247 47.8
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 9.0e-45 184.5 245 48.6
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 9.0e-45 184.5 288 44.4
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 3.4e-44 182.6 244 50.0
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 4.4e-44 182.2 244 48.8
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 4.4e-44 182.2 244 49.2
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 4.4e-44 182.2 247 47.8
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 5.8e-44 181.8 253 48.2
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 7.6e-44 181.4 271 46.9
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 7.6e-44 181.4 245 48.6
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 7.6e-44 181.4 245 48.6
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 7.6e-44 181.4 243 48.1
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 9.9e-44 181.0 260 45.0
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 9.9e-44 181.0 243 46.5
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 2.9e-43 179.5 255 46.7
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 3.8e-43 179.1 261 44.4
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 1.1e-42 177.6 276 43.5
Sopen01g042940 Solanum pennellii HOM05D003241 ORTHO05D003812 3.2e-42 176.0 153 64.7
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 5.4e-42 175.3 243 43.6
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.2e-41 174.1 274 43.4
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 2.1e-41 173.3 245 47.8
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 2.7e-41 172.9 250 44.0
BcaC04g18849 Brassica carinata HOM05D003241 ORTHO05D003812 4.6e-41 172.2 221 50.2
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 7.9e-41 171.4 261 44.4
Lj6g0011042 Lotus japonicus HOM05D003241 ORTHO05D003812 1.7e-40 170.2 240 45.4
Psat6g151960 Pisum sativum HOM05D003241 ORTHO05D003812 1.7e-40 170.2 236 47.5
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 2.3e-40 169.9 248 45.6
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 2.3e-40 169.9 245 46.9
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.0e-40 169.5 275 42.9
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.0e-40 169.5 275 42.9
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 3.9e-40 169.1 275 42.9
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 6.6e-40 168.3 275 43.6
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 8.7e-40 167.9 275 43.6
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 2.5e-39 166.4 281 40.9
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.3e-38 164.1 276 42.8
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 2.8e-38 162.9 275 42.5
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 3.6e-38 162.5 284 40.8
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 4.8e-38 162.2 252 41.7
Actinidia38515 Actinidia chinensis HOM05D003241 ORTHO05D003812 6.2e-38 161.8 221 49.3
Os02g0511500 Oryza sativa ssp. japonica HOM05D003241 ORTHO05D003812 8.1e-38 161.4 247 43.7
ClCG08G000490 Citrullus lanatus HOM05D003241 ORTHO05D003812 1.1e-37 161.0 142 60.6
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 1.4e-37 160.6 250 43.2
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 1.4e-37 160.6 250 43.2
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 1.8e-37 160.2 254 41.3
BcaC04g18848 Brassica carinata HOM05D003241 ORTHO05D003812 6.9e-37 158.3 185 51.9
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 1.5e-36 157.1 225 45.8
vmacro19776 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 4.5e-36 155.6 180 51.7
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 2.4e-34 149.8 254 37.4
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 4.2e-34 149.1 223 44.8
vmacro19775 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 9.3e-34 147.9 127 59.1
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 1.2e-33 147.5 251 40.6
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 1.2e-33 147.5 221 44.3
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 1.2e-33 147.5 228 43.9
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 3.5e-33 146.0 221 44.8
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 3.5e-33 146.0 127 60.6
Psat0s3089g0040 Pisum sativum HOM05D003241 ORTHO05D003812 6.0e-33 145.2 204 48.0
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 1.0e-32 144.4 225 44.4
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 1.8e-32 143.7 197 48.2
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 2.3e-32 143.3 225 43.1
QL09p049212 Quercus lobata HOM05D003241 ORTHO05D003812 3.9e-32 142.5 151 55.0
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 1.5e-31 140.6 234 40.6
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 2.5e-31 139.8 244 39.3
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 7.4e-31 138.3 256 36.7
VMungo1127G0135 Vigna mungo HOM05D003241 ORTHO05D003812 2.8e-30 136.3 229 45.0
CDE06G2045 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 1.4e-29 134.0 209 44.0
CAN.G1652.14 Capsicum annuum HOM05D003241 ORTHO05D003812 1.8e-29 133.7 124 65.3
QL11p041824 Quercus lobata HOM05D003241 ORTHO05D003812 2.9e-27 126.3 216 43.1
Eucgr.L02270 Eucalyptus grandis HOM05D001083 ORTHO05D003812 4.3e-23 112.5 86 67.4
Migut.N01793 Erythranthe guttata HOM05D003241 ORTHO05D003812 2.8e-22 109.8 102 56.9
AagrBONN_evm.TU.Sc2ySwM_117.3043 Anthoceros agrestis HOM05D003241 ORTHO05D003812 1.1e-21 107.8 111 52.3
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 4.5e-20 102.4 254 36.2
Actinidia21372 Actinidia chinensis HOM05D003241 ORTHO05D003812 2.5e-18 96.7 113 47.8
Hma1.2p1_0765F.1_g215090 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 5.5e-18 95.5 83 61.4
Hma1.2p1_0358F.1_g134820 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 1.2e-17 94.4 83 61.4
Sp6g27340 Schrenkiella parvula HOM05D003241 ORTHO05D003812 2.1e-17 93.6 173 37.6
Haze_08784 Corylus avellana HOM05D003241 ORTHO05D003812 3.6e-17 92.8 116 48.3
Lju445A0T13 Lonicera japonica HOM05D003241 ORTHO05D003812 3.6e-17 92.8 75 66.7
AL3G27010 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 1.3e-16 90.9 124 45.2
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 2.3e-16 90.1 114 43.9
MCO08G320 Micromonas commoda HOM05D003241 ORTHO05D003812 1.9e-15 87.0 123 41.5
Aa31LG8G1930 Aethionema arabicum HOM05D003241 ORTHO05D000015 3.3e-15 86.3 103 54.4
Atru.chr1.2009 Acer truncatum HOM05D003241 ORTHO05D003812 5.7e-15 85.5 109 46.8
AT3G14700 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 1.3e-14 84.3 118 44.9
SalBow6G1729 Salvia bowleyana HOM05D003241 ORTHO05D003812 1.3e-14 84.3 156 37.2
SalBow6G5488 Salvia bowleyana HOM05D003241 ORTHO05D003812 1.3e-14 84.3 156 37.2
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 3.7e-14 82.8 217 32.7
Thhalv10022422m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 1.4e-13 80.9 144 41.0
BcaB06g25362 Brassica carinata HOM05D003241 ORTHO05D003812 2.4e-13 80.1 111 46.8
A05p34740 Brassica napus HOM05D003241 ORTHO05D003812 2.4e-13 80.1 107 46.7
Rhsim06G0183100 Rhododendron simsii HOM05D003241 ORTHO05D003812 2.4e-13 80.1 112 46.4
BcaC05g29043 Brassica carinata HOM05D003241 ORTHO05D003812 3.1e-13 79.7 112 48.2
RcHm_v2.0_Chr7g0234901 Rosa chinensis HOM05D003241 ORTHO05D003812 4.1e-13 79.3 231 30.7
BraA05t22289Z Brassica rapa HOM05D003241 ORTHO05D003812 6.9e-13 78.6 113 48.7
AagrBONN_evm.TU.Sc2ySwM_344.225 Anthoceros agrestis HOM05D003241 ORTHO05D003812 9.0e-13 78.2 216 31.5
C05p52560 Brassica napus HOM05D003241 ORTHO05D003812 9.0e-13 78.2 109 48.6
Cre03.g156100 Chlamydomonas reinhardtii HOM05D003241 ORTHO05D003812 9.0e-13 78.2 115 39.1
Rhsim06G0182100 Rhododendron simsii HOM05D003241 ORTHO05D003812 1.2e-12 77.8 112 45.5
Carub.0003s1438 Capsella rubella HOM05D003241 ORTHO05D003812 2.6e-12 76.6 145 36.6
SMO111G0075 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 3.4e-12 76.3 158 36.1
SMO111G0085 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 5.9e-12 75.5 154 37.0
SMO351G0236 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 7.7e-12 75.1 151 36.4
Lj1A444G10 Lonicera japonica HOM05D003241 ORTHO05D003812 3.8e-11 72.8 113 43.4
MD07G1289000 Malus domestica HOM05D003241 ORTHO05D003812 3.2e-10 69.7 104 41.3
Hma1.2p1_0148F.1_g066050 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 7.9e-09 65.1 40 77.5
PRCOL_00003741 Prasinoderma coloniale HOM05D003241 ORTHO05D003812 1.4e-08 64.3 257 25.3
Actinidia16705 Actinidia chinensis HOM05D003241 ORTHO05D003812 1.8e-08 63.9 70 48.6
FAN22G0104 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.3e-07 59.7 153 35.3
vmacro00335 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 7.4e-07 58.5 178 33.1
SHI33107 Sapria himalayana HOM05D001560 ORTHO05D004675 9.7e-07 58.2 58 53.4
ClCG08G000520 Citrullus lanatus HOM05D003241 ORTHO05D003812 8.2e-06 55.1 80 51.2
Glyma.15G216300 Glycine max HOM05D003241 ORTHO05D003812 8.2e-06 55.1 91 47.3


User provided reference genes

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