Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 2326.2 1276 100.0
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1895.2 1261 83.9
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1886.7 1261 82.2
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1882.1 1261 82.3
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1867.8 1261 83.0
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1800.8 1261 74.8
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1781.1 1261 74.7
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1761.9 1261 73.5
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1758.8 1261 73.7
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1737.6 1261 73.4
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1718.7 1261 72.8
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1680.2 1261 71.6
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1679.5 1265 71.8
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1679.5 1261 70.3
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1664.8 1262 71.6
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1661.4 1261 71.0
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1658.3 1261 70.1
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1650.2 1261 69.0
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1641.3 1261 70.5
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1635.5 1261 70.4
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1634.4 1261 69.2
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1632.5 1261 68.8
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1629.4 1389 65.3
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1624.8 1261 69.3
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1624.4 1261 68.0
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1623.6 1309 68.5
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1619.0 1261 67.6
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1615.9 1261 68.1
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1608.6 1261 68.0
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1602.0 1261 68.6
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1597.0 1261 68.0
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1596.3 1261 67.5
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1592.8 1261 67.2
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1591.2 1261 68.6
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1587.0 1261 68.3
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1585.9 1493 60.8
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1579.3 1330 64.3
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1572.8 1269 68.2
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1572.0 1261 66.5
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1569.7 1261 67.8
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1567.4 1261 66.8
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1561.2 1261 66.2
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1560.8 1261 66.1
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1560.0 1261 66.1
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1537.7 1261 66.6
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1537.3 1261 67.3
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1529.2 1008 88.0
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1528.8 1287 65.3
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1525.0 1261 65.3
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1516.1 1284 64.7
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1509.2 1276 64.8
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1508.8 1276 64.8
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1508.8 1303 63.8
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1502.6 1261 64.9
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1499.2 1254 64.7
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1496.5 1314 62.6
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1494.2 1261 64.2
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1492.2 1154 69.3
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1489.9 1154 69.2
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1486.1 1261 64.4
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1483.4 1261 65.2
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1483.0 1261 66.2
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1473.8 1261 65.0
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1454.5 1261 64.5
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1453.7 1345 61.5
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1443.3 1281 62.7
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1442.2 1262 63.1
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1440.2 1262 63.0
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1439.9 1262 63.0
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1439.5 1261 62.7
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1429.8 1261 61.5
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1418.3 1261 61.4
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1415.2 1261 62.5
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1409.0 1261 61.5
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1363.2 1261 60.0
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1337.0 1314 59.4
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1107.8 1261 49.5
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 0.0e+00 1078.9 1062 55.0
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 1.6e-295 1020.0 1261 47.3
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 1.1e-288 997.3 1269 46.7
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 2.7e-271 939.5 846 62.2
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 4.3e-261 905.6 669 71.9
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 4.5e-258 895.6 1262 44.9
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 1.9e-256 890.2 1003 52.8
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 1.1e-248 864.4 761 61.0
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 9.4e-248 861.3 631 71.2
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 6.1e-247 858.6 631 71.0
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.0e-245 853.6 703 64.7
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 7.4e-245 851.7 846 56.0
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 1.7e-244 850.5 688 65.3
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.5e-240 837.4 1056 49.4
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 6.3e-236 822.0 1199 44.6
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 1.6e-234 817.4 731 60.9
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.2e-226 791.2 631 68.9
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 4.2e-224 782.7 558 76.2
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 2.8e-215 753.4 1268 39.4
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 5.2e-206 722.6 735 56.6
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.3e-204 718.0 552 69.4
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.3e-204 718.0 552 69.4
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 1.1e-203 714.9 734 56.5
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 2.4e-203 713.8 628 60.8
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 1.5e-197 694.5 672 55.4
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 5.6e-192 676.0 592 64.5
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 4.6e-162 576.6 524 64.5
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 1.5e-144 518.5 1316 31.3
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 1.6e-138 498.4 450 61.8
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.8e-134 485.0 389 66.3
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 1.5e-133 481.9 456 60.5
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 2.2e-127 461.5 294 81.6
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.0e-120 438.3 222 96.8
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 4.4e-120 437.2 1311 32.4
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.3e-119 435.6 319 71.8
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 6.3e-119 433.3 1326 30.8
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 1.8e-113 415.2 224 91.5
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 5.4e-110 403.7 830 38.1
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 7.2e-107 393.3 1274 28.2
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 7.2e-107 393.3 240 84.2
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 2.5e-99 368.2 307 65.8
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 3.4e-96 357.8 408 53.4
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 4.9e-95 354.0 384 51.6
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 4.1e-94 350.9 202 87.6
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 4.7e-90 337.4 223 78.5
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 4.6e-85 320.9 209 79.9
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 1.2e-69 269.6 223 63.7
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 3.6e-66 258.1 126 100.0
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 1.5e-64 252.7 131 95.4
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 6.9e-49 200.7 192 56.2
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 2.7e-45 188.7 170 58.8
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 3.0e-44 185.3 119 82.4
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 3.0e-36 158.7 107 80.4
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 8.7e-36 157.1 106 78.3
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 2.8e-34 152.1 165 53.9
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 4.1e-33 148.3 72 93.1
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 2.2e-31 142.5 112 65.2
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 8.8e-28 130.6 137 55.5
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.2e-23 115.9 100 64.0
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 4.2e-22 111.7 64 85.9
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 6.1e-21 107.8 141 46.8
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 2.3e-20 105.9 110 56.4
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 3.0e-20 105.5 64 79.7
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 5.3e-17 94.7 280 29.6
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 1.3e-15 90.1 88 56.8
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 3.2e-14 85.5 45 95.6
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 1.0e-12 80.5 77 55.8
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 1.8e-12 79.7 124 38.7
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 4.4e-11 75.1 81 53.1
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 9.1e-09 67.4 58 67.2
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 4.5e-08 65.1 56 67.9
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 4.5e-08 65.1 56 67.9
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 1.3e-07 63.5 77 49.4
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 5.5e-06 58.2 33 84.8
SHI26066 Sapria himalayana HOM05D005045 ORTHO05D366980 9.4e-06 57.4 58 50.0


User provided reference genes

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