Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002259g0090 Nicotiana tabacum HOM05D005759 ORTHO05D007172 1.4e-215 752.7 379 100.0
Nitab4.5_0010486g0020 Nicotiana tabacum HOM05D005759 ORTHO05D007172 1.1e-199 699.9 379 94.5
CAN.G135.64 Capsicum annuum HOM05D005759 ORTHO05D007172 1.3e-160 570.1 382 79.1
PGSC0003DMG400027344 Solanum tuberosum HOM05D005759 ORTHO05D007172 9.9e-153 543.9 370 77.8
Sopen11g003460 Solanum pennellii HOM05D005759 ORTHO05D007172 2.4e-151 539.3 370 77.3
Solyc11g007610.2 Solanum lycopersicum HOM05D005759 ORTHO05D007172 1.2e-150 537.0 370 77.3
Peaxi162Scf00244g00007 Petunia axillaris HOM05D005759 ORTHO05D007172 6.6e-133 478.0 305 81.0
Cc02_g10290 Coffea canephora HOM05D005759 ORTHO05D007172 9.7e-100 367.9 391 52.4
Oeu059850.1 Olea europaea HOM05D005759 ORTHO05D007172 6.3e-99 365.2 395 49.6
Dinv31290 Davidia involucrata HOM05D005759 ORTHO05D007172 2.4e-98 363.2 421 50.1
Haze_02624 Corylus avellana HOM05D005759 ORTHO05D007172 1.9e-95 353.6 417 47.5
CiPaw.13G035800 Carya illinoinensis HOM05D005759 ORTHO05D007172 4.7e-94 349.0 401 50.6
Cfa011218 Carpinus fangiana HOM05D005759 ORTHO05D007172 6.1e-94 348.6 417 47.0
THA.LOC104826349 Tarenaya hassleriana HOM05D005759 ORTHO05D007172 2.6e-92 343.2 393 48.3
TAR623G0127 Trochodendron aralioides HOM05D005759 ORTHO05D007172 7.4e-92 341.7 406 48.5
DCAR_030749 Daucus carota HOM05D005759 ORTHO05D007172 2.8e-91 339.7 381 49.1
Duzib114G0077 Durio zibethinus HOM05D005759 ORTHO05D007172 6.9e-90 335.1 424 45.8
QL04p040912 Quercus lobata HOM05D005759 ORTHO05D007172 2.6e-89 333.2 411 46.0
Manes.07G091866 Manihot esculenta HOM05D005759 ORTHO05D007172 5.0e-88 328.9 417 46.3
Actinidia31089 Actinidia chinensis HOM05D005759 ORTHO05D007172 8.5e-88 328.2 410 46.6
Gorai.011G232200 Gossypium raimondii HOM05D005759 ORTHO05D007172 1.4e-87 327.4 403 46.2
TWI38G0593 Tripterygium wilfordii HOM05D005759 ORTHO05D007172 1.9e-87 327.0 401 47.4
Thecc.10G099000 Theobroma cacao HOM05D005759 ORTHO05D007172 5.5e-87 325.5 416 45.4
GSVIVG01034722001 Vitis vinifera HOM05D005759 ORTHO05D007172 7.2e-87 325.1 378 48.9
RcHm_v2.0_Chr1g0334181 Rosa chinensis HOM05D005759 ORTHO05D007172 9.4e-87 324.7 396 44.4
Gohir.D10G206700 Gossypium hirsutum HOM05D005759 ORTHO05D007172 1.2e-86 324.3 403 45.9
Hma1.2p1_0352F.1_g133040 Hydrangea macrophylla HOM05D005759 ORTHO05D007172 1.2e-86 324.3 428 42.8
Medtr1g050730 Medicago truncatula HOM05D005759 ORTHO05D007172 1.6e-86 323.9 390 46.7
MD07G1072000 Malus domestica HOM05D005759 ORTHO05D007172 4.7e-86 322.4 411 44.5
CSS0028406 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 8.0e-86 321.6 378 50.3
AUR62041532 Chenopodium quinoa HOM05D005759 ORTHO05D007172 8.0e-86 321.6 371 46.4
TPR.G7613 Trifolium pratense HOM05D005759 ORTHO05D007172 3.0e-85 319.7 392 45.9
vmacro10276 Vaccinium macrocarpon HOM05D005759 ORTHO05D007172 3.0e-85 319.7 384 49.2
Actinidia34708 Actinidia chinensis HOM05D005759 ORTHO05D007172 3.9e-85 319.3 370 48.6
COL.COLO4_35597 Corchorus olitorius HOM05D005759 ORTHO05D007172 1.1e-84 317.8 414 43.2
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 3.3e-84 316.2 397 46.6
MD02G1244900 Malus domestica HOM05D005759 ORTHO05D007172 5.7e-84 315.5 401 43.9
Rhsim09G0144200 Rhododendron simsii HOM05D005759 ORTHO05D007172 1.7e-83 313.9 403 46.2
EL10Ac4g08636 Beta vulgaris HOM05D005759 ORTHO05D007172 2.2e-83 313.5 382 45.5
CsaV3_2G032950 Cucumis sativus L. HOM05D005759 ORTHO05D007172 2.2e-83 313.5 391 46.8
Lalb_Chr03g0036351 Lupinus albus HOM05D005759 ORTHO05D007172 3.7e-83 312.8 398 43.7
MELO3C019880.2 Cucumis melo HOM05D005759 ORTHO05D007172 1.8e-82 310.5 392 46.4
Sed0025588 Sechium edule HOM05D005759 ORTHO05D007172 1.8e-82 310.5 410 44.4
FvH4_7g06330 Fragaria vesca HOM05D005759 ORTHO05D007172 3.1e-82 309.7 363 47.7
PGR142G1839 Punica granatum HOM05D005759 ORTHO05D007172 4.1e-82 309.3 397 46.3
FAN03G0647 Fragaria x ananassa HOM05D005759 ORTHO05D007172 7.0e-82 308.5 370 45.7
Potri.010G234000 Populus trichocarpa HOM05D005759 ORTHO05D007172 1.6e-81 307.4 394 44.9
SalBow6G0601 Salvia bowleyana HOM05D005759 ORTHO05D007172 2.0e-81 307.0 371 47.4
Hund06749 Selenicereus undatus HOM05D005759 ORTHO05D007172 5.9e-81 305.4 378 46.3
CDE04G0943 Ceratophyllum demersum HOM05D005759 ORTHO05D007172 1.7e-80 303.9 361 46.8
SGA_v2.0_scaffold13G06508 Striga asiatica HOM05D005759 ORTHO05D007172 3.8e-80 302.8 359 48.7
FAN06G0090 Fragaria x ananassa HOM05D005759 ORTHO05D007172 5.0e-80 302.4 373 46.6
Psat6g094520 Pisum sativum HOM05D005759 ORTHO05D007172 8.5e-80 301.6 398 44.5
ClCG08G008080 Citrullus lanatus HOM05D005759 ORTHO05D007172 1.5e-79 300.8 395 44.3
MSTRG.409 Avicennia marina HOM05D005759 ORTHO05D007172 1.9e-79 300.4 333 49.5
VMungo0720G2821 Vigna mungo HOM05D005759 ORTHO05D007172 2.5e-79 300.1 345 46.4
Atru.chr12.959 Acer truncatum HOM05D005759 ORTHO05D007172 2.7e-78 296.6 312 51.6
Ciclev10031564m.g Citrus clementina HOM05D005759 ORTHO05D007172 3.6e-78 296.2 382 45.8
AL4G23090 Arabidopsis lyrata HOM05D005759 ORTHO05D007172 8.0e-78 295.0 397 43.1
AUR62041544 Chenopodium quinoa HOM05D005759 ORTHO05D007172 3.0e-77 293.1 305 50.2
RhsimUnG0061600 Rhododendron simsii HOM05D005759 ORTHO05D007172 3.0e-77 293.1 444 41.9
Ah.04g163640 Amaranthus hybridus HOM05D005759 ORTHO05D007172 4.0e-77 292.7 366 44.5
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.0e-77 292.7 418 43.5
MBI17_g30596_MAGBIO Magnolia biondii HOM05D005759 ORTHO05D007172 6.7e-77 292.0 416 42.5
CARHR121620 Cardamine hirsuta HOM05D005759 ORTHO05D007172 1.5e-76 290.8 394 44.2
HanXRQChr14g0456321 Helianthus annuus HOM05D005759 ORTHO05D007172 2.0e-76 290.4 362 45.9
A08p00720 Brassica napus HOM05D005759 ORTHO05D007172 5.7e-76 288.9 392 43.6
BraA08t32129Z Brassica rapa HOM05D005759 ORTHO05D007172 5.7e-76 288.9 392 43.6
Phvul.007G245100 Phaseolus vulgaris HOM05D005759 ORTHO05D007172 5.7e-76 288.9 368 43.5
Sabra10G0181400 Salix brachista HOM05D005759 ORTHO05D007172 7.5e-76 288.5 407 41.8
AT2G28600 Arabidopsis thaliana HOM05D005759 ORTHO05D007172 9.7e-76 288.1 397 41.6
CANSAT56G0546 Cannabis sativa HOM05D005759 ORTHO05D007172 1.7e-75 287.3 377 45.1
Glyma.02G165400 Glycine max HOM05D005759 ORTHO05D007172 3.7e-75 286.2 411 41.4
Carub.0004s0956 Capsella rubella HOM05D005759 ORTHO05D007172 8.2e-75 285.0 394 42.4
unitig_736.g22320 Utricularia gibba HOM05D005759 ORTHO05D007172 8.2e-75 285.0 380 45.3
arahy.Tifrunner.gnm1.ann1.Y61W31 Arachis hypogaea HOM05D005759 ORTHO05D007172 2.4e-74 283.5 392 41.3
Lsat_1_v5_gn_2_102781 Lactuca sativa HOM05D005759 ORTHO05D007172 1.6e-73 280.8 344 45.9
Migut.F01660 Erythranthe guttata HOM05D005759 ORTHO05D007172 2.0e-73 280.4 389 44.7
Sc06g0002190 Simmondsia chinensis HOM05D005759 ORTHO05D007172 2.0e-73 280.4 372 44.4
Aqoxy1G00957 Aquilegia oxysepala HOM05D005759 ORTHO05D007172 2.7e-73 280.0 397 41.8
arahy.Tifrunner.gnm1.ann1.0Q505S Arachis hypogaea HOM05D005759 ORTHO05D007172 3.5e-73 279.6 392 41.1
Lj5g0004167 Lotus japonicus HOM05D005759 ORTHO05D007172 1.7e-72 277.3 362 43.1
Thhalv10016555m.g Eutrema salsugineum HOM05D005759 ORTHO05D007172 1.9e-71 273.9 394 41.6
Sp4g11420 Schrenkiella parvula HOM05D005759 ORTHO05D007172 5.5e-71 272.3 392 42.3
PSO339G3253 Papaver somniferum HOM05D005759 ORTHO05D007172 1.0e-69 268.1 371 41.2
HPP92_024384 Vanilla planifolia HOM05D005759 ORTHO05D007172 1.8e-69 267.3 341 43.1
HanXRQChr16g0513241 Helianthus annuus HOM05D005759 ORTHO05D007172 2.0e-68 263.8 321 48.9
Nn2g13981 Nelumbo nucifera HOM05D005759 ORTHO05D007172 4.4e-68 262.7 364 41.8
Zm00001eb164020 Zea mays HOM05D005759 ORTHO05D007172 4.4e-68 262.7 374 43.6
PSO384G4559 Papaver somniferum HOM05D005759 ORTHO05D007172 9.8e-68 261.5 371 40.2
Eucgr.G02717 Eucalyptus grandis HOM05D005759 ORTHO05D007172 1.3e-67 261.2 344 41.6
Prupe.2G090100 Prunus persica HOM05D005759 ORTHO05D007172 1.3e-67 261.2 335 43.9
Os12g0147500 Oryza sativa ssp. japonica HOM05D005759 ORTHO05D007172 9.1e-66 255.0 391 41.4
BcaB04g16965 Brassica carinata HOM05D005759 ORTHO05D007172 1.2e-65 254.6 390 39.5
BolC3t21576H Brassica oleracea HOM05D005759 ORTHO05D007172 2.3e-64 250.4 392 39.5
ATR0820G119 Amborella trichopoda HOM05D005759 ORTHO05D007172 5.0e-64 249.2 388 38.7
C03p92620 Brassica napus HOM05D005759 ORTHO05D007172 1.1e-63 248.1 392 39.0
BcaC01g01514 Brassica carinata HOM05D005759 ORTHO05D007172 1.2e-62 244.6 392 38.5
Migut.F00917 Erythranthe guttata HOM05D005759 ORTHO05D007172 3.1e-58 229.9 341 41.1
Duzib128G1757 Durio zibethinus HOM05D005759 ORTHO05D007172 5.9e-57 225.7 166 63.9
ECA238G2526 Erigeron canadensis HOM05D005759 ORTHO05D007172 1.6e-54 217.6 330 39.7
Ca_06884_v3 Cicer arietinum L. HOM05D005759 ORTHO05D007172 8.0e-54 215.3 278 43.5
Nn6g35073 Nelumbo nucifera HOM05D005759 ORTHO05D007172 4.4e-52 209.5 375 39.2
SalBow4G3335 Salvia bowleyana HOM05D005759 ORTHO05D007172 1.7e-51 207.6 230 47.8
SGA_v2.0_scaffold62G21347 Striga asiatica HOM05D005759 ORTHO05D007172 2.9e-51 206.8 214 47.7
PSO063G1818 Papaver somniferum HOM05D005759 ORTHO05D007172 3.5e-49 199.9 287 39.4
unitig_899.g14480 Utricularia gibba HOM05D005759 ORTHO05D007172 4.0e-45 186.4 211 45.5
CSS0000330 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 5.1e-40 169.5 223 48.0
Zm00001eb086490 Zea mays HOM05D005759 ORTHO05D007172 1.1e-37 161.8 162 50.6
Peaxi162Scf00244g00112 Petunia axillaris HOM05D005759 ORTHO05D007172 3.0e-32 143.7 130 60.8
Mapoly0120s0020 Marchantia polymorpha HOM05D005759 ORTHO05D007172 4.4e-28 129.8 439 26.4
Pp3c1_25970 Physcomitrium patens HOM05D005759 ORTHO05D007172 9.9e-28 128.6 359 29.8
Peaxi162Scf00244g00111 Petunia axillaris HOM05D005759 ORTHO05D007172 6.0e-25 119.4 83 74.7
Zm00001eb201540 Zea mays HOM05D005759 ORTHO05D007172 1.5e-20 104.8 92 54.3
AagrBONN_evm.TU.Sc2ySwM_228.2343 Anthoceros agrestis HOM05D005759 ORTHO05D007172 2.0e-20 104.4 358 28.5
SEGI_00328 Sequoiadendron giganteum HOM05D005759 ORTHO05D000001 2.6e-20 104.0 265 31.3
PSO170G6466 Papaver somniferum HOM05D005759 ORTHO05D007172 2.4e-18 97.4 197 34.0
Cpa.g.sc720.1 Carica papaya HOM05D005759 ORTHO05D007172 5.4e-18 96.3 183 38.8
GSVIVG01034723001 Vitis vinifera HOM05D005759 ORTHO05D007172 1.1e-13 82.0 102 45.1
FAN01G1973 Fragaria x ananassa HOM05D005759 ORTHO05D007172 2.2e-11 74.3 303 29.4
PGSC0003DMG400027317 Solanum tuberosum HOM05D002372 ORTHO05D007172 9.3e-10 68.9 33 97.0
arahy.Tifrunner.gnm1.ann1.61HMI4 Arachis hypogaea HOM05D000032 ORTHO05D007444 4.6e-09 66.6 159 27.7
arahy.Tifrunner.gnm1.ann1.ZA5ISV Arachis hypogaea HOM05D000032 ORTHO05D007444 4.6e-09 66.6 159 27.7
CBR_g23342 Chara braunii HOM05D005759 ORTHO05D002561 4.6e-09 66.6 414 24.4
PSO339G2548 Papaver somniferum HOM05D005759 ORTHO05D007172 1.0e-08 65.5 119 38.7
Nitab4.5_0000543g0180 Nicotiana tabacum HOM05D000032 ORTHO05D007444 3.9e-08 63.5 226 25.7
Solyc08g076200.4 Solanum lycopersicum HOM05D000032 ORTHO05D007444 6.7e-08 62.8 159 28.3
Sopen08g024840 Solanum pennellii HOM05D000032 ORTHO05D007444 6.7e-08 62.8 159 30.8
PGSC0003DMG400009295 Solanum tuberosum HOM05D000032 ORTHO05D007444 6.7e-08 62.8 159 30.8
SEGI_15594 Sequoiadendron giganteum HOM05D000032 ORTHO05D007444 8.7e-08 62.4 181 25.4
THA.LOC104798505 Tarenaya hassleriana HOM05D000032 ORTHO05D007444 1.5e-07 61.6 159 27.0
TPR.G24223 Trifolium pratense HOM05D000032 ORTHO05D007444 2.5e-07 60.8 160 27.5
HPP92_020807 Vanilla planifolia HOM05D000032 ORTHO05D007444 4.3e-07 60.1 159 27.7
Lsat_1_v5_gn_7_84341 Lactuca sativa HOM05D005759 ORTHO05D007172 5.6e-07 59.7 96 34.4
CARHR098210 Cardamine hirsuta HOM05D000032 ORTHO05D004222 7.4e-07 59.3 165 29.1
BcaB06g26335 Brassica carinata HOM05D000032 ORTHO05D004222 9.6e-07 58.9 165 29.1
BcaC05g28082 Brassica carinata HOM05D000032 ORTHO05D004222 9.6e-07 58.9 165 29.1
A05p26460 Brassica napus HOM05D000032 ORTHO05D004222 9.6e-07 58.9 165 29.1
C05p41050 Brassica napus HOM05D000032 ORTHO05D004222 9.6e-07 58.9 165 29.1
BolC5t32847H Brassica oleracea HOM05D000032 ORTHO05D004222 9.6e-07 58.9 165 29.1
BraA05t21519Z Brassica rapa HOM05D000032 ORTHO05D004222 9.6e-07 58.9 165 29.1
Ca_25155_v3 Cicer arietinum L. HOM05D000032 ORTHO05D007444 9.6e-07 58.9 160 26.9
Lj2g0008608 Lotus japonicus HOM05D000032 ORTHO05D007444 9.6e-07 58.9 159 25.2
Lalb_Chr16g0380911 Lupinus albus HOM05D000032 ORTHO05D007444 1.3e-06 58.5 159 25.2
VMungo1215G3152 Vigna mungo HOM05D000032 ORTHO05D007444 1.3e-06 58.5 159 26.4
Thhalv10020296m.g Eutrema salsugineum HOM05D000032 ORTHO05D004222 1.6e-06 58.2 165 29.1
Medtr5g027840 Medicago truncatula HOM05D000032 ORTHO05D007444 1.6e-06 58.2 160 26.9
Sp3g20100 Schrenkiella parvula HOM05D000032 ORTHO05D004222 1.6e-06 58.2 165 29.1
FAN05G3519 Fragaria x ananassa HOM05D000032 ORTHO05D004222 2.1e-06 57.8 152 30.3
Phvul.002G133300 Phaseolus vulgaris HOM05D000032 ORTHO05D007444 2.1e-06 57.8 159 25.8
Psat2g139400 Pisum sativum HOM05D000032 ORTHO05D007444 2.1e-06 57.8 161 28.6
RcHm_v2.0_Chr2g0155131 Rosa chinensis HOM05D000032 ORTHO05D004222 2.1e-06 57.8 152 30.3
SGA_v2.0_scaffold144G35861 Striga asiatica HOM05D003080 ORTHO05D003601 2.1e-06 57.8 159 27.0
ATR0100G037 Amborella trichopoda HOM05D000032 ORTHO05D004222 2.8e-06 57.4 125 32.8
FvH4_6g40140 Fragaria vesca HOM05D000032 ORTHO05D004222 2.8e-06 57.4 152 30.3
FAN02G1324 Fragaria x ananassa HOM05D000032 ORTHO05D004222 2.8e-06 57.4 152 29.6
FAN09G4090 Fragaria x ananassa HOM05D000032 ORTHO05D004222 2.8e-06 57.4 152 29.6
Glyma.18G116700 Glycine max HOM05D000032 ORTHO05D004222 2.8e-06 57.4 113 33.6
Lalb_Chr09g0325341 Lupinus albus HOM05D000032 ORTHO05D007444 2.8e-06 57.4 159 25.2
Peaxi162Scf00879g00110 Petunia axillaris HOM05D000032 ORTHO05D007444 2.8e-06 57.4 159 28.9
Aa31LG8G8880 Aethionema arabicum HOM05D000032 ORTHO05D004222 3.7e-06 57.0 165 28.5
AT3G22310 Arabidopsis thaliana HOM05D000032 ORTHO05D004222 3.7e-06 57.0 165 29.1
Glyma.09G210700 Glycine max HOM05D000032 ORTHO05D007444 3.7e-06 57.0 159 25.2
AL3G36580 Arabidopsis lyrata HOM05D000032 ORTHO05D004222 4.8e-06 56.6 165 29.1
Carub.0003s2248 Capsella rubella HOM05D000032 ORTHO05D004222 4.8e-06 56.6 165 29.1
FAN14G0790 Fragaria x ananassa HOM05D000032 ORTHO05D004222 4.8e-06 56.6 152 29.6
Glyma.01G010400 Glycine max HOM05D000032 ORTHO05D007444 4.8e-06 56.6 159 25.2
Dinv15551 Davidia involucrata HOM05D000032 ORTHO05D004222 6.2e-06 56.2 152 28.9
HanXRQChr17g0537701 Helianthus annuus HOM05D000032 ORTHO05D007444 6.2e-06 56.2 159 25.2
TWI74G1516 Tripterygium wilfordii HOM05D000032 ORTHO05D004222 6.2e-06 56.2 171 25.7
MSTRG.1786 Avicennia marina HOM05D000032 ORTHO05D007444 8.1e-06 55.8 343 23.3
CAN.G946.1 Capsicum annuum HOM05D000032 ORTHO05D004222 8.1e-06 55.8 152 28.9
ECA246G2233 Erigeron canadensis HOM05D000032 ORTHO05D007444 8.1e-06 55.8 159 25.2
Prupe.3G191800 Prunus persica HOM05D000032 ORTHO05D004222 8.1e-06 55.8 152 28.9
HPP92_012194 Vanilla planifolia HOM05D000032 ORTHO05D004222 8.1e-06 55.8 152 29.6


User provided reference genes

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