Gene: AT3G22310

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G22310
  • Transcript Identifier AT3G22310.1
  • Gene Type Coding gene
  • Location Chr3 : 7887382-7889806 : positive

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G22310.1
  • symbol PMH1
  • Alias ATRH9,RNA HELICASE 9
  • uniprot Q9LUW6

Descriptions

  • Description putative mitochondrial RNA helicase 1
  • Computational description putative mitochondrial RNA helicase 1 (PMH1); CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: putative mitochondrial RNA helicase 2 (TAIR:AT3G22330.1); Has 154573 Blast hits to 81509 proteins in 3841 species: Archae - 1406; Bacteria - 64973; Metazoa - 34940; Fungi - 12014; Plants - 11424; Viruses - 1269; Other Eukaryotes - 28547 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000373
IBA
Gene OntologyGroup II intron splicing1
GO:0006364
IBA
Gene OntologyrRNA processing1
GO:0039694
IMP
Gene Ontologyviral RNA genome replication2
GO:0009651
IMP
Gene Ontologyresponse to salt stress3
GO:0009414
IMP
Gene Ontologyresponse to water deprivation3
GO:0009409
IEP
Gene Ontologyresponse to cold3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IDA
Gene OntologyRNA binding3
GO:0003677
IDA
Gene OntologyDNA binding3
GO:0003724
IEA
Gene OntologyRNA helicase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
HDA
Gene Ontologycytosol4
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005737
IDA
IBA
Gene Ontologycytoplasm1 2
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0019034
IDA
Gene Ontologyviral replication complex2
GO:0032991
IDA
Gene Ontologyprotein-containing complex5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011545 DEAD/DEAH box helicase domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
Mapman id Description
16.11.4.2.1.4 RNA processing.organelle machinery.pre-mRNA splicing.mitochondrial RNA splicing.group-II intron splicing.RNA helicase (PMH)