Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 1.2e-197 693.0 342 100.0
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 1.7e-164 582.8 313 94.2
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 7.1e-142 507.7 317 81.4
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 1.2e-138 496.9 317 79.5
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 2.1e-138 496.1 317 79.2
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 1.4e-137 493.4 317 79.8
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 1.1e-134 483.8 372 71.0
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 9.6e-123 444.1 331 69.5
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 1.0e-116 424.1 314 70.1
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 1.0e-116 424.1 314 70.1
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 5.1e-116 421.8 309 69.6
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 6.7e-116 421.4 322 67.7
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 9.6e-115 417.5 309 68.6
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 1.6e-114 416.8 322 67.4
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 8.1e-114 414.5 309 70.2
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 8.1e-114 414.5 310 67.4
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 1.8e-113 413.3 308 69.5
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 2.4e-113 412.9 328 65.2
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 2.4e-113 412.9 325 65.8
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 2.0e-112 409.8 333 65.5
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 3.4e-112 409.1 314 68.2
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 4.5e-112 408.7 312 67.6
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 4.5e-112 408.7 297 70.4
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 7.6e-112 407.9 267 73.0
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 7.6e-112 407.9 315 68.6
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 1.3e-111 407.1 310 67.4
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 2.2e-111 406.4 320 65.9
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 2.2e-111 406.4 328 63.4
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 8.4e-111 404.4 313 65.8
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 1.1e-110 404.1 328 64.0
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 1.4e-110 403.7 328 63.7
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 2.4e-110 402.9 305 65.9
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 9.3e-110 401.0 325 63.1
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 9.3e-110 401.0 306 65.4
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 1.2e-109 400.6 335 63.0
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 2.1e-109 399.8 311 65.6
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 2.7e-109 399.4 325 64.6
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 4.6e-109 398.7 315 64.8
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 7.9e-109 397.9 311 65.6
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 1.8e-108 396.7 311 66.9
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 3.0e-108 396.0 312 64.7
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 5.1e-108 395.2 307 65.5
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 6.7e-108 394.8 308 65.9
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 2.5e-107 392.9 317 67.2
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 3.3e-107 392.5 311 64.6
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 4.3e-107 392.1 316 63.0
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 4.3e-107 392.1 311 66.6
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 7.4e-107 391.3 325 63.7
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 1.3e-106 390.6 349 59.6
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 1.6e-106 390.2 312 65.4
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 2.1e-106 389.8 339 60.5
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 2.8e-106 389.4 311 65.0
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 3.7e-106 389.0 316 66.5
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 3.7e-106 389.0 319 63.9
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 4.8e-106 388.7 315 65.1
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 1.8e-105 386.7 328 61.0
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 2.4e-105 386.3 313 65.2
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 3.1e-105 386.0 311 65.6
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 4.0e-105 385.6 311 64.6
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 5.3e-105 385.2 321 62.0
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 5.3e-105 385.2 330 62.7
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 5.3e-105 385.2 313 65.2
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 1.2e-104 384.0 312 64.1
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.2e-104 384.0 318 62.6
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 2.0e-104 383.3 318 65.1
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 3.4e-104 382.5 347 59.9
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 7.6e-104 381.3 306 65.4
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 1.0e-103 380.9 318 64.2
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 1.3e-103 380.6 307 64.8
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 2.2e-103 379.8 356 58.1
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 1.1e-102 377.5 321 62.6
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 1.4e-102 377.1 325 63.1
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 5.5e-102 375.2 322 62.1
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 5.5e-102 375.2 217 80.2
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 7.1e-102 374.8 325 61.5
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 1.2e-101 374.0 320 62.2
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 2.1e-101 373.2 320 62.2
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 2.1e-101 373.2 330 61.5
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 2.7e-101 372.9 210 82.9
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 4.6e-101 372.1 325 61.8
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 6.0e-101 371.7 327 62.1
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 6.0e-101 371.7 344 60.2
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 3.9e-100 369.0 322 61.8
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 5.1e-100 368.6 353 57.5
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 5.1e-100 368.6 308 62.0
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 8.7e-100 367.9 318 61.0
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 8.7e-100 367.9 318 61.0
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 8.7e-100 367.9 318 61.0
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 3.3e-99 365.9 313 62.3
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 7.4e-99 364.8 314 61.8
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 7.4e-99 364.8 314 61.8
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 7.4e-99 364.8 314 61.8
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 8.2e-98 361.3 307 59.9
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 2.4e-97 359.8 344 59.3
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 4.1e-97 359.0 209 78.5
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 1.2e-96 357.5 303 63.7
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 2.6e-96 356.3 208 78.4
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 6.7e-92 341.7 292 57.9
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 1.1e-91 340.9 286 61.9
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 1.9e-91 340.1 310 59.4
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.8e-90 335.5 264 62.5
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 1.3e-87 327.4 281 62.6
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.9e-87 326.2 258 57.8
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 8.5e-87 324.7 281 55.9
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 8.5e-87 324.7 288 56.2
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 4.2e-86 322.4 270 58.9
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 3.6e-85 319.3 313 56.2
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 1.3e-82 310.8 312 57.1
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 2.4e-81 306.6 361 49.0
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.5e-80 303.9 252 55.2
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 1.0e-79 301.2 294 54.8
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.4e-78 297.4 252 55.2
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 1.0e-71 274.6 215 59.5
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 1.0e-71 274.6 241 62.7
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.5e-70 270.8 227 64.8
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 7.2e-70 268.5 219 58.0
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 3.0e-68 263.1 180 73.3
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 2.6e-67 260.0 239 62.3
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.6e-56 224.2 196 56.1
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 1.7e-55 220.7 166 61.4
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 2.3e-55 220.3 193 58.5
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 3.3e-54 216.5 183 55.7
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 4.9e-50 202.6 210 54.3
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 2.0e-48 197.2 200 52.5
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 3.5e-48 196.4 108 84.3
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 6.2e-37 159.1 100 76.0
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 3.1e-36 156.8 97 79.4
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 9.8e-35 151.8 85 78.8
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 8.3e-34 148.7 174 43.1
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.4e-33 147.1 174 42.5
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.6e-32 144.4 174 42.0
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.3e-31 140.6 174 42.0
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 1.2e-29 134.8 77 76.6
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 8.1e-29 132.1 90 68.9
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 1.2e-27 128.3 80 76.2
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.4e-27 126.3 165 40.6
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.7e-26 124.4 174 37.9
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 8.3e-26 122.1 164 46.3
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.6e-23 112.5 174 34.5
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 8.6e-23 112.1 141 44.7
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.1e-20 105.1 174 32.2
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.1e-20 105.1 174 32.2
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.8e-20 104.4 173 34.1
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 6.8e-20 102.4 70 62.9
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.2e-19 101.7 174 31.6
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.4e-17 94.0 119 40.3
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 4.4e-11 73.2 57 61.4
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 3.8e-10 70.1 174 27.0
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 4.9e-10 69.7 157 26.8
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 2.4e-09 67.4 67 50.7
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.7e-07 61.2 102 33.3
AUR62002800 Chenopodium quinoa HOM05D004663 ORTHO05D006325 8.7e-07 58.9 32 75.0


User provided reference genes

Program Settings