Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001476g0170 Nicotiana tabacum HOM05D009316 ORTHO05D005814 3.4e-65 251.5 126 100.0
Nitab4.5_0007244g0010 Nicotiana tabacum HOM05D004823 ORTHO05D005814 2.9e-16 89.0 42 97.6
Solyc01g088380.3 Solanum lycopersicum HOM05D004823 ORTHO05D005814 8.4e-16 87.4 40 100.0
Sopen01g035210 Solanum pennellii HOM05D004823 ORTHO05D005814 8.4e-16 87.4 40 100.0
Nitab4.5_0006227g0020 Nicotiana tabacum HOM05D004823 ORTHO05D005814 1.1e-15 87.0 40 97.5
Peaxi162Scf00417g00039 Petunia axillaris HOM05D004823 ORTHO05D005814 1.4e-15 86.7 40 97.5
Peaxi162Scf01124g00124 Petunia axillaris HOM05D004823 ORTHO05D005814 1.4e-15 86.7 40 97.5
CAN.G1480.3 Capsicum annuum HOM05D004823 ORTHO05D005814 7.1e-15 84.3 40 95.0
Manes.05G060200 Manihot esculenta HOM05D004823 ORTHO05D005814 1.2e-14 83.6 40 95.0
Hma1.2p1_0601F.1_g187180 Hydrangea macrophylla HOM05D004823 ORTHO05D005814 2.1e-14 82.8 40 95.0
Dinv31197 Davidia involucrata HOM05D004823 ORTHO05D005814 2.7e-14 82.4 40 92.5
Ciclev10018521m.g Citrus clementina HOM05D004823 ORTHO05D005814 7.9e-14 80.9 40 92.5
Nn1g00608 Nelumbo nucifera HOM05D004823 ORTHO05D005814 7.9e-14 80.9 40 92.5
QL04p025376 Quercus lobata HOM05D004823 ORTHO05D005814 7.9e-14 80.9 40 92.5
GSVIVG01018406001 Vitis vinifera HOM05D004823 ORTHO05D005814 7.9e-14 80.9 40 92.5
CANSAT21G1834 Cannabis sativa HOM05D004823 ORTHO05D005814 1.0e-13 80.5 40 92.5
COL.COLO4_19317 Corchorus olitorius HOM05D004823 ORTHO05D005814 1.0e-13 80.5 40 92.5
TWI23G0233 Tripterygium wilfordii HOM05D004823 ORTHO05D005814 1.0e-13 80.5 40 92.5
Phvul.005G016100 Phaseolus vulgaris HOM05D004823 ORTHO05D005814 1.7e-13 79.7 40 85.0
FvH4_7g08480 Fragaria vesca HOM05D004823 ORTHO05D005814 2.3e-13 79.3 40 90.0
FAN03G0722 Fragaria x ananassa HOM05D004823 ORTHO05D005814 2.3e-13 79.3 40 90.0
FAN06G0930 Fragaria x ananassa HOM05D004823 ORTHO05D005814 2.3e-13 79.3 40 90.0
FAN10G0616 Fragaria x ananassa HOM05D004823 ORTHO05D005814 2.3e-13 79.3 40 90.0
FAN10G1986 Fragaria x ananassa HOM05D004823 ORTHO05D005814 2.3e-13 79.3 40 90.0
Lj7C553G7 Lonicera japonica HOM05D004823 ORTHO05D005814 2.3e-13 79.3 40 90.0
Prupe.2G112200 Prunus persica HOM05D004823 ORTHO05D005814 2.3e-13 79.3 40 90.0
Sabra14G0140300 Salix brachista HOM05D004823 ORTHO05D005814 2.3e-13 79.3 40 90.0
Aqoxy5G01066 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 3.0e-13 79.0 40 90.0
Aqoxy7G00646 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 3.0e-13 79.0 40 90.0
Lj1g0025017 Lotus japonicus HOM05D004823 ORTHO05D005814 3.0e-13 79.0 40 87.5
Rhsim01G0145100 Rhododendron simsii HOM05D004823 ORTHO05D005814 3.0e-13 79.0 40 85.0
CSS0005414 Camellia sinensis var. sinensis HOM05D004823 ORTHO05D005814 3.9e-13 78.6 40 87.5
Haze_02925 Corylus avellana HOM05D004823 ORTHO05D005814 3.9e-13 78.6 40 90.0
DCAR_029534 Daucus carota HOM05D004823 ORTHO05D005814 3.9e-13 78.6 40 90.0
Sc08g0006560 Simmondsia chinensis HOM05D004823 ORTHO05D005814 5.1e-13 78.2 40 87.5
HanXRQChr08g0226321 Helianthus annuus HOM05D004823 ORTHO05D005814 6.6e-13 77.8 40 87.5
Potri.014G180200 Populus trichocarpa HOM05D004823 ORTHO05D005814 6.6e-13 77.8 40 87.5
Atru.chr5.23 Acer truncatum HOM05D004823 ORTHO05D005814 8.7e-13 77.4 40 85.0
Atru.chr5.51 Acer truncatum HOM05D004823 ORTHO05D005814 8.7e-13 77.4 40 85.0
Duzib106G1753 Durio zibethinus HOM05D004823 ORTHO05D005814 8.7e-13 77.4 40 87.5
EL10Ac8g19253 Beta vulgaris HOM05D004823 ORTHO05D005814 1.1e-12 77.0 40 85.0
CiPaw.14G012800 Carya illinoinensis HOM05D004823 ORTHO05D005814 1.1e-12 77.0 40 87.5
ECA234G1924 Erigeron canadensis HOM05D004823 ORTHO05D005814 1.1e-12 77.0 40 87.5
Lsat_1_v5_gn_4_44681 Lactuca sativa HOM05D004823 ORTHO05D005814 1.1e-12 77.0 40 87.5
RcHm_v2.0_Chr1g0343241 Rosa chinensis HOM05D004823 ORTHO05D005814 1.1e-12 77.0 40 87.5
TAR375G0889 Trochodendron aralioides HOM05D004823 ORTHO05D005814 1.1e-12 77.0 40 90.0
arahy.Tifrunner.gnm1.ann1.61K3Y7 Arachis hypogaea HOM05D004823 ORTHO05D005814 1.5e-12 76.6 40 85.0
arahy.Tifrunner.gnm1.ann1.GG1KFP Arachis hypogaea HOM05D004823 ORTHO05D005814 1.5e-12 76.6 40 85.0
Cfa011006 Carpinus fangiana HOM05D004823 ORTHO05D005814 1.5e-12 76.6 40 87.5
Cc00_g16960 Coffea canephora HOM05D004823 ORTHO05D005814 1.5e-12 76.6 40 85.0
CDE11G0321 Ceratophyllum demersum HOM05D004823 ORTHO05D005814 1.9e-12 76.3 40 87.5
MD07G1085900 Malus domestica HOM05D004823 ORTHO05D005814 1.9e-12 76.3 40 87.5
Nitab4.5_0000082g0320 Nicotiana tabacum HOM05D009316 ORTHO05D285477 1.9e-12 76.3 52 75.0
AUR62023352 Chenopodium quinoa HOM05D004823 ORTHO05D005814 2.5e-12 75.9 40 85.0
ClCG05G002760 Citrullus lanatus HOM05D004823 ORTHO05D005814 2.5e-12 75.9 40 82.5
CsaV3_3G010270 Cucumis sativus L. HOM05D004823 ORTHO05D005814 2.5e-12 75.9 40 82.5
Sed0025177 Sechium edule HOM05D004823 ORTHO05D005814 2.5e-12 75.9 40 82.5
AUR62013806 Chenopodium quinoa HOM05D004823 ORTHO05D005814 4.3e-12 75.1 40 85.0
Ca_04616_v3 Cicer arietinum L. HOM05D004823 ORTHO05D005814 4.3e-12 75.1 40 82.5
MELO3C006248.2 Cucumis melo HOM05D004823 ORTHO05D005814 4.3e-12 75.1 40 80.0
Medtr7g034575 Medicago truncatula HOM05D004823 ORTHO05D005814 4.3e-12 75.1 40 82.5
TPR.G14862 Trifolium pratense HOM05D004823 ORTHO05D005814 4.3e-12 75.1 40 82.5
vmacro21094 Vaccinium macrocarpon HOM05D004823 ORTHO05D005814 4.3e-12 75.1 40 85.0
AT1G08840 Arabidopsis thaliana HOM05D004823 ORTHO05D005814 5.6e-12 74.7 40 85.0
A09p65740 Brassica napus HOM05D004823 ORTHO05D005814 5.6e-12 74.7 40 85.0
BraA09t41917Z Brassica rapa HOM05D004823 ORTHO05D005814 5.6e-12 74.7 40 85.0
Thhalv10006571m.g Eutrema salsugineum HOM05D004823 ORTHO05D005814 5.6e-12 74.7 40 85.0
Sp1g07480 Schrenkiella parvula HOM05D004823 ORTHO05D005814 5.6e-12 74.7 40 85.0
Thecc.10G001100 Theobroma cacao HOM05D004823 ORTHO05D005814 5.6e-12 74.7 40 85.0
Glyma.06G310500 Glycine max HOM05D004823 ORTHO05D005814 7.4e-12 74.3 40 82.5
Nitab4.5_0001036g0180 Nicotiana tabacum HOM05D009316 ORTHO05D282797 7.4e-12 74.3 47 78.7
VMungo1080G1086 Vigna mungo HOM05D004823 ORTHO05D005814 7.4e-12 74.3 40 82.5
AL1G19270 Arabidopsis lyrata HOM05D004823 ORTHO05D005814 9.6e-12 73.9 40 82.5
Psat3g163800 Pisum sativum HOM05D004823 ORTHO05D005814 1.3e-11 73.6 40 80.0
PSO063G2621 Papaver somniferum HOM05D004823 ORTHO05D005814 1.6e-11 73.2 40 80.0
PSO782G4318 Papaver somniferum HOM05D004823 ORTHO05D005814 1.6e-11 73.2 40 80.0
BcaC07g41923 Brassica carinata HOM05D004823 ORTHO05D005814 2.1e-11 72.8 40 82.5
C08p49810 Brassica napus HOM05D004823 ORTHO05D005814 2.1e-11 72.8 40 82.5
BolC8t52508H Brassica oleracea HOM05D004823 ORTHO05D005814 2.1e-11 72.8 40 82.5
Nitab4.5_0001566g0070 Nicotiana tabacum HOM05D009316 ORTHO05D282453 2.1e-11 72.8 50 72.0
Lalb_Chr03g0040711 Lupinus albus HOM05D004823 ORTHO05D005814 2.8e-11 72.4 40 80.0
THA.LOC104808236 Tarenaya hassleriana HOM05D004823 ORTHO05D005814 2.8e-11 72.4 40 80.0
CARHR008760 Cardamine hirsuta HOM05D004823 ORTHO05D005814 3.6e-11 72.0 40 77.5
Gohir.D04G072675 Gossypium hirsutum HOM05D004823 ORTHO05D005814 3.6e-11 72.0 40 80.0
Gorai.012G081700 Gossypium raimondii HOM05D004823 ORTHO05D005814 3.6e-11 72.0 40 80.0
Hund17140 Selenicereus undatus HOM05D004823 ORTHO05D005814 3.6e-11 72.0 40 85.0
Actinidia33293 Actinidia chinensis HOM05D004823 ORTHO05D005814 4.8e-11 71.6 37 83.8
Ah.15g091500 Amaranthus hybridus HOM05D004823 ORTHO05D005814 4.8e-11 71.6 40 80.0
Oeu034864.1 Olea europaea HOM05D004823 ORTHO05D005814 8.1e-11 70.9 40 82.5
SGA_v2.0_scaffold578G53026 Striga asiatica HOM05D004823 ORTHO05D005814 1.1e-10 70.5 41 82.9
Migut.B01471 Erythranthe guttata HOM05D004823 ORTHO05D005814 1.8e-10 69.7 40 82.5
Aa31sc17G210 Aethionema arabicum HOM05D004823 ORTHO05D005814 2.4e-10 69.3 40 80.0
Gohir.A05G333800 Gossypium hirsutum HOM05D004823 ORTHO05D005814 2.4e-10 69.3 40 77.5
HPP92_003324 Vanilla planifolia HOM05D004823 ORTHO05D005814 2.4e-10 69.3 40 75.0
Nitab4.5_0006295g0030 Nicotiana tabacum HOM05D009316 ORTHO05D286184 4.0e-10 68.6 52 67.3
Atru.chr5.137 Acer truncatum HOM05D004823 ORTHO05D005814 6.9e-10 67.8 37 78.4
Nitab4.5_0003601g0010 Nicotiana tabacum HOM05D009316 ORTHO05D284806 9.0e-10 67.4 48 75.0
SHI13670 Sapria himalayana HOM05D004823 ORTHO05D005814 1.2e-09 67.0 42 73.8
Eucgr.D01139 Eucalyptus grandis HOM05D004823 ORTHO05D005814 1.5e-09 66.6 40 75.0
Os04g0588200 Oryza sativa ssp. japonica HOM05D004823 ORTHO05D005814 2.6e-09 65.9 40 75.0
Nitab4.5_0003227g0050 Nicotiana tabacum HOM05D009316 ORTHO05D282437 3.4e-09 65.5 49 69.4
PGR083G0266 Punica granatum HOM05D004823 ORTHO05D005814 3.4e-09 65.5 40 75.0
Nitab4.5_0000681g0040 Nicotiana tabacum HOM05D009316 ORTHO05D284419 7.6e-09 64.3 49 69.4
Nitab4.5_0016457g0010 Nicotiana tabacum HOM05D009316 ORTHO05D284986 9.9e-09 63.9 47 72.3
Nitab4.5_0002828g0100 Nicotiana tabacum HOM05D009316 ORTHO05D286506 1.3e-08 63.5 51 66.7
SEGI_04112 Sequoiadendron giganteum HOM05D004823 ORTHO05D005814 1.7e-08 63.2 40 70.0
ATR0705G006 Amborella trichopoda HOM05D004823 ORTHO05D005814 2.9e-08 62.4 40 75.0
Mapoly0039s0120 Marchantia polymorpha HOM05D004823 ORTHO05D005814 3.8e-08 62.0 40 70.0
Nitab4.5_0001817g0050 Nicotiana tabacum HOM05D009794 ORTHO05D000309 9.3e-07 57.4 42 71.4
CBR_g41486 Chara braunii HOM05D004823 ORTHO05D005814 1.2e-06 57.0 40 67.5
Nitab4.5_0000069g0540 Nicotiana tabacum HOM05D009316 ORTHO05D286054 1.2e-06 57.0 64 53.1
AagrBONN_evm.TU.Sc2ySwM_362.2737 Anthoceros agrestis HOM05D004823 ORTHO05D005814 6.0e-06 54.7 45 62.2


User provided reference genes

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