Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001468g0040 Nicotiana tabacum HOM05D000216 ORTHO05D001131 4.0e-19 97.1 48 100.0
CAN.G1648.7 Capsicum annuum HOM05D000216 ORTHO05D001131 1.9e-08 61.6 39 79.5
CAN.G1738.7 Capsicum annuum HOM05D000216 ORTHO05D001131 1.9e-08 61.6 39 79.5
CAN.G358.145 Capsicum annuum HOM05D000216 ORTHO05D001131 1.9e-08 61.6 39 79.5
CAN.G892.2 Capsicum annuum HOM05D000216 ORTHO05D001131 1.9e-08 61.6 39 79.5
CAN.G939.17 Capsicum annuum HOM05D000216 ORTHO05D001131 1.9e-08 61.6 39 79.5
Peaxi162Scf00608g00014 Petunia axillaris HOM05D000216 ORTHO05D001131 1.9e-08 61.6 39 79.5
Solyc10g017920.1 Solanum lycopersicum HOM05D000216 ORTHO05D001131 4.2e-08 60.5 39 76.9
LjContig00489g0016354 Lotus japonicus HOM05D000216 ORTHO05D001131 5.5e-08 60.1 39 76.9
Nitab4.5_0007104g0040 Nicotiana tabacum HOM05D000216 ORTHO05D001131 5.5e-08 60.1 39 76.9
LjContig00318g0016482 Lotus japonicus HOM05D000216 ORTHO05D001131 9.3e-08 59.3 39 71.8
PGR111G0080 Punica granatum HOM05D000216 ORTHO05D001131 9.3e-08 59.3 39 74.4
RcHm_v2.0_CPg0502401 Rosa chinensis HOM05D000216 ORTHO05D001131 9.3e-08 59.3 39 74.4
Sc13g0006970 Simmondsia chinensis HOM05D000216 ORTHO05D001131 9.3e-08 59.3 39 74.4
Sc15g0001760 Simmondsia chinensis HOM05D000216 ORTHO05D001131 9.3e-08 59.3 39 74.4
Sc25g0001960 Simmondsia chinensis HOM05D000216 ORTHO05D001131 9.3e-08 59.3 39 74.4
DCAR_032476 Daucus carota HOM05D000216 ORTHO05D001131 1.2e-07 58.9 39 74.4
Lj2A1238G119 Lonicera japonica HOM05D000216 ORTHO05D001131 1.2e-07 58.9 39 74.4
Lj2A1239T199 Lonicera japonica HOM05D000216 ORTHO05D001131 1.2e-07 58.9 39 74.4
Lj2C1237G9 Lonicera japonica HOM05D000216 ORTHO05D001131 1.2e-07 58.9 39 74.4
PSO548G0026 Papaver somniferum HOM05D000216 ORTHO05D001131 1.2e-07 58.9 39 71.8
CAN.G1082.2 Capsicum annuum HOM05D000216 ORTHO05D001131 1.6e-07 58.5 39 74.4
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 1.6e-07 58.5 39 74.4
arahy.Tifrunner.gnm1.ann1.MIWC4Y Arachis hypogaea HOM05D000216 ORTHO05D001131 2.1e-07 58.2 39 71.8
Ca_05611_v3 Cicer arietinum L. HOM05D000216 ORTHO05D001131 2.7e-07 57.8 39 71.8
Ah.01g011550 Amaranthus hybridus HOM05D000216 ORTHO05D001131 3.5e-07 57.4 39 71.8
Ah.09g227320 Amaranthus hybridus HOM05D000216 ORTHO05D001131 3.5e-07 57.4 39 71.8
Ah.10g027590 Amaranthus hybridus HOM05D000216 ORTHO05D001131 3.5e-07 57.4 39 71.8
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 3.5e-07 57.4 39 71.8
EL10As4g23395 Beta vulgaris HOM05D000216 ORTHO05D001131 3.5e-07 57.4 39 71.8
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 3.5e-07 57.4 39 69.2
Migut.H02461 Erythranthe guttata HOM05D000216 ORTHO05D001131 4.6e-07 57.0 33 81.8
Hma1.2p1_0094F.1_g047108 Hydrangea macrophylla HOM05D000216 ORTHO05D001131 4.6e-07 57.0 39 69.2
Ah.10g027890 Amaranthus hybridus HOM05D000216 ORTHO05D001131 6.0e-07 56.6 39 69.2
Ah.10g028290 Amaranthus hybridus HOM05D000216 ORTHO05D001131 6.0e-07 56.6 39 69.2
Medtr4g051130 Medicago truncatula HOM05D000216 ORTHO05D001131 6.0e-07 56.6 39 69.2
QL11p015550 Quercus lobata HOM05D000216 ORTHO05D001131 6.0e-07 56.6 39 71.8
SGA_v2.0_scaffold119G32686 Striga asiatica HOM05D000216 ORTHO05D001131 6.0e-07 56.6 39 71.8
arahy.Tifrunner.gnm1.ann1.J2QZCX Arachis hypogaea HOM05D000216 ORTHO05D001131 7.9e-07 56.2 39 69.2
ClCG10G006060 Citrullus lanatus HOM05D000216 ORTHO05D001131 7.9e-07 56.2 39 69.2
Sed0002232 Sechium edule HOM05D000216 ORTHO05D001131 7.9e-07 56.2 39 69.2
Sed0007596 Sechium edule HOM05D000216 ORTHO05D001131 7.9e-07 56.2 39 69.2
AUR62024083 Chenopodium quinoa HOM05D000216 ORTHO05D001131 1.0e-06 55.8 39 69.2
Potri.013G142232 Populus trichocarpa HOM05D000216 ORTHO05D001131 1.0e-06 55.8 39 69.2
SabraPtG0001100 Salix brachista HOM05D000216 ORTHO05D001131 1.0e-06 55.8 39 69.2
vmacro22402 Vaccinium macrocarpon HOM05D000216 ORTHO05D001131 1.0e-06 55.8 39 69.2
ATR0329G029 Amborella trichopoda HOM05D000216 ORTHO05D001131 1.3e-06 55.5 39 66.7
Nn020s41502 Nelumbo nucifera HOM05D000216 ORTHO05D001131 1.8e-06 55.1 39 66.7
Nn082s42674 Nelumbo nucifera HOM05D000216 ORTHO05D001131 1.8e-06 55.1 39 66.7
SalBow2G3505 Salvia bowleyana HOM05D000216 ORTHO05D001131 1.8e-06 55.1 35 77.1
Lalb_Chr09g0335411 Lupinus albus HOM05D000216 ORTHO05D001131 2.3e-06 54.7 39 69.2
unitig_91.g26498 Utricularia gibba HOM05D000216 ORTHO05D001131 2.3e-06 54.7 39 69.2
VMungo1015G0001 Vigna mungo HOM05D000216 ORTHO05D001131 5.1e-06 53.5 39 64.1
CsaV3_UNG208330 Cucumis sativus L. HOM05D000216 ORTHO05D001131 6.7e-06 53.1 39 66.7
HanXRQChr05g0139701 Helianthus annuus HOM05D000216 ORTHO05D001131 6.7e-06 53.1 39 69.2
HanXRQChr11g0326601 Helianthus annuus HOM05D000216 ORTHO05D001131 6.7e-06 53.1 39 69.2
HanXRQChr16g0503971 Helianthus annuus HOM05D000216 ORTHO05D001131 6.7e-06 53.1 39 69.2
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 6.7e-06 53.1 39 69.2
Lsat_1_v5_gn_1_118620 Lactuca sativa HOM05D000216 ORTHO05D001131 6.7e-06 53.1 39 69.2
Lsat_1_v5_gn_1_92840 Lactuca sativa HOM05D000216 ORTHO05D001131 6.7e-06 53.1 39 69.2
Lsat_1_v5_gn_8_1800 Lactuca sativa HOM05D000216 ORTHO05D001131 6.7e-06 53.1 39 69.2
Psat7g199200 Pisum sativum HOM05D000216 ORTHO05D001131 6.7e-06 53.1 39 66.7
Gohir.A07G155805 Gossypium hirsutum HOM05D000216 ORTHO05D001131 8.7e-06 52.8 39 66.7


User provided reference genes

Program Settings