Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 4.7e-252 874.0 432 100.0
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.2e-250 869.4 432 99.5
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 9.0e-235 816.6 523 80.9
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 3.4e-234 814.7 523 80.5
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 5.8e-234 813.9 523 80.5
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 7.6e-234 813.5 523 80.5
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 4.2e-232 807.7 523 79.5
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 7.9e-231 803.5 523 79.0
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 1.0e-230 803.1 523 79.2
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 1.3e-230 802.7 523 79.0
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 3.0e-230 801.6 521 78.9
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 5.1e-230 800.8 522 78.7
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 5.1e-230 800.8 522 78.9
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 1.9e-229 798.9 523 78.6
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.9e-229 798.9 523 78.6
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 3.3e-229 798.1 523 78.6
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 3.3e-229 798.1 521 78.7
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 5.6e-229 797.3 521 78.7
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 5.6e-229 797.3 523 78.2
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 9.6e-229 796.6 523 78.6
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 9.6e-229 796.6 521 78.5
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 9.6e-229 796.6 523 78.6
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 9.6e-229 796.6 523 78.6
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 9.6e-229 796.6 522 78.4
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 1.3e-228 796.2 521 78.9
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 1.6e-228 795.8 523 78.2
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 1.6e-228 795.8 523 78.6
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 2.1e-228 795.4 521 78.1
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 2.8e-228 795.0 523 78.0
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 2.8e-228 795.0 523 78.2
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 3.7e-228 794.7 523 78.4
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.8e-228 794.3 523 78.4
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 4.8e-228 794.3 521 78.3
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 8.1e-228 793.5 522 78.0
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 8.1e-228 793.5 523 78.4
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.1e-227 793.1 523 78.4
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 1.4e-227 792.7 521 77.7
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 1.8e-227 792.3 523 77.6
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 1.8e-227 792.3 523 78.0
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 1.8e-227 792.3 520 78.1
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 2.4e-227 792.0 523 77.6
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 2.4e-227 792.0 523 78.2
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 2.4e-227 792.0 523 78.2
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 3.1e-227 791.6 523 78.0
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 3.1e-227 791.6 521 78.3
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 3.1e-227 791.6 521 77.7
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 3.1e-227 791.6 523 78.0
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 4.0e-227 791.2 523 78.2
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 4.0e-227 791.2 523 77.4
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 5.3e-227 790.8 523 77.4
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 5.3e-227 790.8 521 78.1
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 5.3e-227 790.8 523 77.4
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 6.9e-227 790.4 523 77.8
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 6.9e-227 790.4 523 77.6
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 6.9e-227 790.4 523 77.4
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 9.0e-227 790.0 523 78.0
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 1.2e-226 789.6 544 75.7
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.5e-226 789.3 523 77.4
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 2.0e-226 788.9 523 77.2
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 2.0e-226 788.9 523 77.2
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 2.0e-226 788.9 523 77.4
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 2.6e-226 788.5 521 77.4
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 2.6e-226 788.5 521 77.7
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 2.6e-226 788.5 523 77.6
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 5.8e-226 787.3 521 77.5
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 5.8e-226 787.3 523 77.2
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 7.6e-226 786.9 523 77.1
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 9.9e-226 786.6 521 77.4
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 9.9e-226 786.6 521 77.4
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 1.3e-225 786.2 523 77.1
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 2.9e-225 785.0 523 76.9
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 2.9e-225 785.0 523 76.9
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 2.9e-225 785.0 521 77.2
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 4.9e-225 784.3 521 77.0
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 6.4e-225 783.9 523 76.7
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 6.4e-225 783.9 522 76.4
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 8.4e-225 783.5 523 77.1
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 1.1e-224 783.1 523 76.7
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.4e-224 781.9 521 77.4
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 2.4e-224 781.9 555 73.9
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 2.4e-224 781.9 514 78.2
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 3.2e-224 781.6 521 76.4
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 4.2e-224 781.2 523 76.9
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 1.2e-223 779.6 523 76.5
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 1.0e-222 776.5 522 76.1
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 1.0e-222 776.5 544 74.8
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 2.3e-222 775.4 557 72.7
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 7.4e-221 770.4 519 74.8
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 2.1e-220 768.8 576 71.0
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 9.0e-219 763.5 522 75.3
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 4.5e-218 761.1 521 74.1
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.9e-216 755.7 521 73.5
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.9e-216 755.7 521 73.5
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 2.5e-216 755.4 532 74.4
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 1.6e-215 752.7 523 74.6
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 8.7e-214 746.9 521 72.4
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 2.9e-209 731.9 515 73.8
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 8.5e-209 730.3 489 76.5
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 3.3e-197 691.8 523 67.5
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 1.7e-196 689.5 520 70.2
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 7.7e-194 680.6 456 76.8
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 6.1e-191 671.0 458 75.5
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 3.0e-190 668.7 457 75.9
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 6.5e-185 651.0 521 64.7
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 6.5e-185 651.0 507 69.0
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 2.1e-175 619.4 384 82.3
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 5.4e-171 604.7 501 66.1
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 8.9e-166 587.4 416 74.0
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 4.1e-163 578.6 414 73.9
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 2.7e-162 575.9 408 73.5
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 3.7e-156 555.4 416 71.2
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.4e-155 553.5 435 66.9
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 1.3e-153 547.0 348 79.9
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.1e-150 537.3 416 69.5
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 3.9e-145 518.8 495 58.4
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.6e-143 513.5 424 65.6
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.6e-143 512.3 377 70.3
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 7.6e-125 451.4 414 61.1
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 1.1e-123 447.6 302 75.5
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 5.6e-120 435.3 300 73.7
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-118 431.0 285 76.5
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 5.3e-118 428.7 262 80.9
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.5e-109 400.6 434 52.3
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 1.0e-105 387.9 432 54.6
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 5.3e-102 375.6 198 93.9
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.9e-100 369.8 195 93.8
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 2.1e-98 363.6 301 65.4
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 5.0e-92 342.4 242 73.1
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 2.8e-87 326.6 214 77.1
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 4.5e-85 319.3 341 56.0
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 8.8e-81 305.1 202 77.2
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 2.6e-77 293.5 266 59.8
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.8e-71 272.7 214 66.8
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 6.8e-65 252.3 196 67.3
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 5.7e-64 249.2 155 79.4
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-58 231.5 246 55.7
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 2.7e-58 230.3 160 73.1
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 2.0e-56 224.2 158 74.1
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 4.9e-55 219.5 135 84.4
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 3.1e-54 216.9 116 90.5
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-53 214.9 123 87.8
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 6.6e-52 209.1 117 88.0
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 5.7e-48 196.1 105 88.6
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 9.8e-48 195.3 125 76.8
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 9.8e-48 195.3 183 56.8
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 1.0e-44 185.3 202 55.4
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 1.3e-44 184.9 104 83.7
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 3.9e-44 183.3 113 81.4
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.5e-43 181.4 112 77.7
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 4.4e-40 169.9 430 32.8
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 6.4e-39 166.0 224 48.7
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 6.8e-33 146.0 98 76.5
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 1.2e-29 135.2 73 95.9
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 8.6e-28 129.0 75 85.3
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 7.1e-22 109.4 55 94.5
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 2.1e-18 97.8 49 93.9
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 1.4e-17 95.1 45 95.6
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 2.0e-16 91.3 63 71.4
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.6e-16 90.9 53 83.0
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 1.9e-14 84.7 49 81.6
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 1.9e-14 84.7 43 88.4
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 6.2e-10 69.7 41 80.5
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 3.8e-07 60.5 62 61.3


User provided reference genes

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