Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 2.0e-236 822.0 412 100.0
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.8e-232 808.9 412 98.5
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 4.7e-217 757.7 406 93.8
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 1.1e-216 756.5 406 93.6
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 1.4e-216 756.1 406 93.6
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 9.2e-213 743.4 426 89.0
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 4.6e-212 741.1 405 90.9
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 1.7e-206 722.6 407 90.2
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 1.4e-205 719.5 412 88.6
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 1.6e-204 716.1 408 88.2
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 1.6e-204 716.1 411 87.8
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 7.8e-204 713.8 414 86.5
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.0e-203 713.4 409 88.0
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 1.7e-203 712.6 409 87.0
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 6.6e-203 710.7 407 88.5
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 6.6e-203 710.7 411 86.9
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 8.6e-203 710.3 407 87.0
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 1.1e-202 709.9 409 87.8
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.9e-202 709.1 407 86.7
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 2.5e-202 708.8 417 85.4
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 2.5e-202 708.8 409 87.8
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 4.3e-202 708.0 413 87.7
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 4.3e-202 708.0 404 87.4
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 4.3e-202 708.0 409 87.5
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 9.6e-202 706.8 406 88.7
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 2.1e-201 705.7 422 85.5
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.1e-201 705.7 407 88.2
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 3.6e-201 704.9 407 86.2
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 4.7e-201 704.5 410 86.1
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 4.7e-201 704.5 410 86.1
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 8.1e-201 703.7 409 87.0
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.1e-200 703.4 405 87.4
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 1.8e-200 702.6 422 84.4
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.8e-200 702.6 410 87.3
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 2.4e-200 702.2 411 86.6
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 3.1e-200 701.8 407 86.5
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 3.1e-200 701.8 408 87.3
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 4.0e-200 701.4 405 87.4
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 4.0e-200 701.4 406 86.7
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 5.2e-200 701.0 410 85.6
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 8.9e-200 700.3 406 87.2
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 1.2e-199 699.9 406 87.9
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 1.5e-199 699.5 371 92.7
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 2.0e-199 699.1 407 87.0
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 2.6e-199 698.7 413 86.4
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 2.6e-199 698.7 409 86.1
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 2.6e-199 698.7 409 86.3
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 3.4e-199 698.4 411 85.9
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 3.4e-199 698.4 404 86.9
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 3.4e-199 698.4 411 86.1
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 4.4e-199 698.0 405 86.4
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 4.4e-199 698.0 404 86.6
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 9.9e-199 696.8 410 85.1
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.3e-198 696.4 404 86.6
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 1.7e-198 696.0 406 86.0
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 3.8e-198 694.9 410 85.4
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 3.8e-198 694.9 410 85.4
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 4.9e-198 694.5 410 84.9
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.9e-198 694.5 404 86.4
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 4.9e-198 694.5 404 86.6
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 4.9e-198 694.5 408 87.3
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 6.4e-198 694.1 410 84.6
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 6.4e-198 694.1 410 84.6
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 6.4e-198 694.1 406 85.2
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 8.4e-198 693.7 401 86.8
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 8.4e-198 693.7 405 86.2
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 1.1e-197 693.3 410 85.1
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.1e-197 693.3 405 85.4
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 1.4e-197 693.0 410 84.6
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 1.4e-197 693.0 407 85.3
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 1.9e-197 692.6 411 84.9
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 2.4e-197 692.2 408 85.5
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 2.4e-197 692.2 407 84.8
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 3.2e-197 691.8 410 86.1
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 1.6e-196 689.5 406 85.7
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 2.1e-196 689.1 407 86.5
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 2.1e-196 689.1 407 86.5
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 2.1e-196 689.1 410 85.9
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 3.5e-196 688.3 406 86.0
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 6.0e-196 687.6 407 85.3
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 1.3e-195 686.4 411 84.9
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 1.3e-195 686.4 405 85.4
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 3.9e-195 684.9 422 82.9
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 5.1e-195 684.5 405 85.2
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 3.3e-194 681.8 409 84.4
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 4.3e-194 681.4 419 84.0
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 5.6e-194 681.0 414 83.1
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 1.3e-193 679.9 371 90.6
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 2.1e-193 679.1 409 84.6
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 2.1e-193 679.1 383 88.3
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 3.6e-193 678.3 416 82.7
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 3.6e-193 678.3 406 84.0
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 8.1e-193 677.2 405 84.2
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 1.1e-192 676.8 414 83.8
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 1.4e-192 676.4 411 81.3
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 1.4e-192 676.4 378 88.1
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.8e-192 676.0 412 83.3
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 9.0e-192 673.7 409 83.1
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 2.0e-191 672.5 410 83.7
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 2.6e-191 672.2 403 84.1
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 2.6e-191 672.2 407 84.8
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 7.6e-191 670.6 406 83.0
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 9.9e-191 670.2 406 83.0
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 2.9e-190 668.7 406 83.3
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 8.4e-190 667.2 428 81.1
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 3.0e-187 658.7 357 89.1
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 2.7e-180 635.6 333 92.2
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 2.3e-179 632.5 376 84.3
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 1.6e-177 626.3 353 84.7
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 2.2e-174 615.9 357 82.4
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.9e-174 615.5 359 81.9
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.5e-173 612.5 362 80.9
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 4.2e-173 611.7 407 76.9
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 6.7e-171 604.4 411 78.1
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 1.6e-164 583.2 407 75.4
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 1.9e-162 576.2 338 84.9
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 1.0e-155 553.9 341 83.3
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 4.3e-154 548.5 321 85.7
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 2.5e-149 532.7 357 72.0
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 4.2e-149 531.9 317 84.5
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 8.2e-145 517.7 377 66.8
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 4.1e-144 515.4 402 69.2
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.3e-142 510.4 268 90.7
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.7e-142 510.0 311 83.9
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 2.7e-140 502.7 345 71.3
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 1.2e-135 487.3 290 84.5
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 3.8e-134 482.3 302 81.1
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.1e-133 480.7 378 64.3
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 6.8e-131 471.5 248 92.7
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 9.8e-130 467.6 368 63.0
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 3.7e-121 439.1 285 78.6
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 8.0e-116 421.4 280 76.8
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 1.3e-102 377.5 257 71.6
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 4.0e-99 365.9 323 63.2
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 8.1e-60 235.3 132 86.4
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 1.1e-59 235.0 132 85.6
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 1.0e-54 218.4 380 37.9
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 3.6e-47 193.4 118 79.7
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 4.6e-47 193.0 118 78.8
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 5.3e-43 179.5 104 85.6
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 3.4e-42 176.8 103 85.4
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 3.4e-42 176.8 103 85.4
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.5e-37 161.4 102 80.4
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 1.3e-36 158.3 94 83.0
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.0e-33 148.7 94 75.5
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 1.2e-31 141.7 92 78.3
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 4.1e-27 126.7 105 67.6
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 7.0e-27 125.9 148 52.0
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 7.2e-24 115.9 71 73.2
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 8.0e-23 112.5 59 89.8
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 1.5e-21 108.2 62 87.1
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 2.8e-20 104.0 47 93.6
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.4e-19 101.7 81 66.7
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 3.1e-19 100.5 59 84.7
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.5e-13 79.3 42 92.9
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 2.4e-11 74.3 79 60.8
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 7.2e-08 62.8 53 62.3


User provided reference genes

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