Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001127g0130 Nicotiana tabacum HOM05D000113 ORTHO05D012125 7.6e-53 210.3 111 100.0
PGSC0003DMG401024649 Solanum tuberosum HOM05D000113 ORTHO05D012125 6.2e-31 137.5 111 73.9
PGSC0003DMG402024649 Solanum tuberosum HOM05D000113 ORTHO05D002571 6.2e-31 137.5 111 73.9
Solyc03g115400.2 Solanum lycopersicum HOM05D000113 ORTHO05D012125 1.2e-29 133.3 109 73.4
Sopen03g034400 Solanum pennellii HOM05D000113 ORTHO05D002571 1.3e-28 129.8 109 70.6
CAN.G479.26 Capsicum annuum HOM05D000113 ORTHO05D012125 1.7e-28 129.4 111 69.4
Nitab4.5_0001410g0130 Nicotiana tabacum HOM05D000113 ORTHO05D002571 2.9e-28 128.6 110 70.0
Nitab4.5_0004284g0070 Nicotiana tabacum HOM05D000113 ORTHO05D002571 5.1e-25 117.9 84 77.4
Migut.D01678 Erythranthe guttata HOM05D000113 ORTHO05D002571 1.4e-19 99.8 110 54.5
Peaxi162Scf00201g00132 Petunia axillaris HOM05D000113 ORTHO05D002571 1.4e-19 99.8 69 76.8
unitig_8.g2956 Utricularia gibba HOM05D000113 ORTHO05D002571 3.2e-19 98.6 109 55.0
Cc04_g15030 Coffea canephora HOM05D000113 ORTHO05D012125 4.2e-19 98.2 113 49.6
Oeu008272.2 Olea europaea HOM05D000113 ORTHO05D002571 5.5e-19 97.8 85 60.0
SGA_v2.0_scaffold1221G53867 Striga asiatica HOM05D000113 ORTHO05D012125 2.1e-18 95.9 109 51.4
Dinv38794 Davidia involucrata HOM05D000113 ORTHO05D002571 2.7e-18 95.5 113 50.4
ECA232G2775 Erigeron canadensis HOM05D000113 ORTHO05D002571 7.9e-18 94.0 105 50.5
AUR62029968 Chenopodium quinoa HOM05D000113 ORTHO05D012125 1.8e-17 92.8 106 51.9
TAR374G0746 Trochodendron aralioides HOM05D000113 ORTHO05D002571 1.8e-17 92.8 113 51.3
Cfa019308 Carpinus fangiana HOM05D000113 ORTHO05D002571 5.1e-17 91.3 115 48.7
Haze_07691 Corylus avellana HOM05D000113 ORTHO05D002571 5.1e-17 91.3 115 49.6
Hma1.2p1_0060F.1_g033270 Hydrangea macrophylla HOM05D000113 ORTHO05D002571 3.3e-16 88.6 84 57.1
Thecc.03G097900 Theobroma cacao HOM05D000113 ORTHO05D002571 5.7e-16 87.8 85 55.3
PGR044G1093 Punica granatum HOM05D000113 ORTHO05D002571 9.7e-16 87.0 113 48.7
Actinidia35027 Actinidia chinensis HOM05D000113 ORTHO05D002571 1.3e-15 86.7 96 50.0
EL10Ac3g06248 Beta vulgaris HOM05D000113 ORTHO05D002571 1.3e-15 86.7 84 56.0
vmacro16510 Vaccinium macrocarpon HOM05D000113 ORTHO05D002571 1.3e-15 86.7 111 47.7
DCAR_021511 Daucus carota HOM05D000113 ORTHO05D002571 1.6e-15 86.3 111 45.9
Gohir.A12G181200 Gossypium hirsutum HOM05D000113 ORTHO05D002571 2.8e-15 85.5 112 46.4
GSVIVG01007911001 Vitis vinifera HOM05D000113 ORTHO05D002571 2.8e-15 85.5 87 52.9
SalBow7G4123 Salvia bowleyana HOM05D000113 ORTHO05D002571 3.7e-15 85.1 80 61.2
RcHm_v2.0_Chr7g0182681 Rosa chinensis HOM05D000113 ORTHO05D002571 4.8e-15 84.7 84 52.4
CiPaw.11G050600 Carya illinoinensis HOM05D000113 ORTHO05D002571 6.3e-15 84.3 84 54.8
Prupe.5G201700 Prunus persica HOM05D000113 ORTHO05D002571 6.3e-15 84.3 84 54.8
Sc10g0009750 Simmondsia chinensis HOM05D000113 ORTHO05D002571 1.1e-14 83.6 108 47.2
Rhsim12G0152100 Rhododendron simsii HOM05D000113 ORTHO05D002571 1.4e-14 83.2 84 53.6
Aa31LG7G3630 Aethionema arabicum HOM05D000113 ORTHO05D002571 2.4e-14 82.4 105 49.5
FAN18G0690 Fragaria x ananassa HOM05D000113 ORTHO05D002571 2.4e-14 82.4 84 52.4
Gohir.D12G183900 Gossypium hirsutum HOM05D000113 ORTHO05D002571 2.4e-14 82.4 112 44.6
Aa31LG7G3740 Aethionema arabicum HOM05D000113 ORTHO05D002571 4.1e-14 81.6 102 51.0
Gorai.008G197200 Gossypium raimondii HOM05D000113 ORTHO05D002571 4.1e-14 81.6 112 44.6
AT1G32490 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 5.3e-14 81.3 105 46.7
Ca_13800_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 5.3e-14 81.3 89 53.9
MELO3C017216.2 Cucumis melo HOM05D000113 ORTHO05D002571 5.3e-14 81.3 103 51.5
Duzib205G1857 Durio zibethinus HOM05D000113 ORTHO05D002571 5.3e-14 81.3 84 51.2
FvH4_5g14240 Fragaria vesca HOM05D000113 ORTHO05D002571 5.3e-14 81.3 84 52.4
Lj6g0016007 Lotus japonicus HOM05D000113 ORTHO05D002571 6.9e-14 80.9 82 56.1
CSS0000469 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 9.0e-14 80.5 81 54.3
Glyma.01G040900 Glycine max HOM05D000113 ORTHO05D002571 9.0e-14 80.5 109 45.9
Phvul.009G193400 Phaseolus vulgaris HOM05D000113 ORTHO05D002571 9.0e-14 80.5 84 54.8
Prupe.6G159800 Prunus persica HOM05D000113 ORTHO05D002571 1.2e-13 80.1 86 53.5
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 1.5e-13 79.7 84 50.0
Glyma.06G201700 Glycine max HOM05D000113 ORTHO05D002571 1.5e-13 79.7 84 54.8
Nn2g13470 Nelumbo nucifera HOM05D000113 ORTHO05D002571 2.0e-13 79.3 81 54.3
THA.LOC104812747 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 2.0e-13 79.3 84 53.6
CsaV3_1G002800 Cucumis sativus L. HOM05D000113 ORTHO05D002571 2.6e-13 79.0 103 50.5
PSO013G0399 Papaver somniferum HOM05D000113 ORTHO05D012125 2.6e-13 79.0 92 48.9
Eucgr.K02504 Eucalyptus grandis HOM05D000113 ORTHO05D012125 3.4e-13 78.6 99 46.5
AL1G46740 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 5.9e-13 77.8 105 45.7
TPR.G12156 Trifolium pratense HOM05D000113 ORTHO05D002571 5.9e-13 77.8 82 54.9
Sabra15G0006800 Salix brachista HOM05D000113 ORTHO05D002571 7.6e-13 77.4 100 48.0
Ah.13g073050 Amaranthus hybridus HOM05D000113 ORTHO05D002571 1.0e-12 77.0 70 58.6
AT2G35340 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 1.0e-12 77.0 109 45.0
Lj1g0013131 Lotus japonicus HOM05D000113 ORTHO05D002571 1.0e-12 77.0 93 50.5
Lalb_Chr13g0294241 Lupinus albus HOM05D000113 ORTHO05D002571 1.0e-12 77.0 112 45.5
PSO063G4203 Papaver somniferum HOM05D000113 ORTHO05D002571 1.0e-12 77.0 91 49.5
Psat0s3790g0040 Pisum sativum HOM05D000113 ORTHO05D002571 1.0e-12 77.0 82 54.9
Sed0009402 Sechium edule HOM05D000113 ORTHO05D002571 1.0e-12 77.0 109 46.8
CSS0030678 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 1.3e-12 76.6 106 46.2
Thhalv10017881m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 1.3e-12 76.6 101 48.5
Manes.13G073000 Manihot esculenta HOM05D000113 ORTHO05D002571 1.7e-12 76.3 84 50.0
Sp1g28410 Schrenkiella parvula HOM05D000113 ORTHO05D002571 1.7e-12 76.3 84 51.2
arahy.Tifrunner.gnm1.ann1.LUB4JJ Arachis hypogaea HOM05D000113 ORTHO05D002571 2.2e-12 75.9 84 53.6
Rhsim06G0025800 Rhododendron simsii HOM05D000113 ORTHO05D002571 2.2e-12 75.9 86 48.8
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 2.2e-12 75.9 86 48.8
Aqoxy3G03585 Aquilegia oxysepala HOM05D000113 ORTHO05D002571 2.9e-12 75.5 107 43.9
HanXRQChr10g0308651 Helianthus annuus HOM05D000113 ORTHO05D002571 2.9e-12 75.5 92 48.9
Lj5A105G62 Lonicera japonica HOM05D000113 ORTHO05D012125 2.9e-12 75.5 100 48.0
Medtr3g023880 Medicago truncatula HOM05D000113 ORTHO05D002571 3.8e-12 75.1 82 53.7
Nitab4.5_0008517g0020 Nicotiana tabacum HOM05D000113 ORTHO05D002571 5.0e-12 74.7 76 60.5
AL4G31370 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 8.5e-12 73.9 106 46.2
Carub.0001s3090 Capsella rubella HOM05D000113 ORTHO05D002571 8.5e-12 73.9 105 43.8
CARHR031940 Cardamine hirsuta HOM05D000113 ORTHO05D002571 1.1e-11 73.6 105 43.8
Potri.015G008700 Populus trichocarpa HOM05D000113 ORTHO05D002571 1.1e-11 73.6 85 52.9
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 1.4e-11 73.2 98 50.0
Dinv22270 Davidia involucrata HOM05D000113 ORTHO05D002571 1.4e-11 73.2 82 52.4
SEGI_02990 Sequoiadendron giganteum HOM05D000113 ORTHO05D002571 1.9e-11 72.8 109 41.3
Ciclev10017694m.g Citrus clementina HOM05D000113 ORTHO05D012125 2.5e-11 72.4 78 53.8
Nitab4.5_0000219g0080 Nicotiana tabacum HOM05D000113 ORTHO05D002571 3.2e-11 72.0 75 60.0
Aa31LG2G13460 Aethionema arabicum HOM05D000113 ORTHO05D002571 4.2e-11 71.6 88 51.1
TWI73G0006 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 5.5e-11 71.2 115 40.9
COL.COLO4_22215 Corchorus olitorius HOM05D000113 ORTHO05D002571 7.2e-11 70.9 105 43.8
MD06G1200100 Malus domestica HOM05D000113 ORTHO05D002571 7.2e-11 70.9 84 47.6
PSO409G0035 Papaver somniferum HOM05D000113 ORTHO05D002571 7.2e-11 70.9 111 44.1
Aa31LG7G6920 Aethionema arabicum HOM05D000113 ORTHO05D002571 2.7e-10 68.9 78 51.3
Medtr1g010030 Medicago truncatula HOM05D000113 ORTHO05D002571 2.7e-10 68.9 115 43.5
VMungo1127G1561 Vigna mungo HOM05D000113 ORTHO05D002571 2.7e-10 68.9 84 48.8
HPP92_010044 Vanilla planifolia HOM05D000113 ORTHO05D002571 1.4e-09 66.6 106 40.6
BcaC05g27851 Brassica carinata HOM05D000113 ORTHO05D002571 1.8e-09 66.2 80 50.0
C05p38490 Brassica napus HOM05D000113 ORTHO05D002571 1.8e-09 66.2 80 50.0
BolC5t32583H Brassica oleracea HOM05D000113 ORTHO05D002571 1.8e-09 66.2 80 50.0
A05p24800 Brassica napus HOM05D000113 ORTHO05D002571 3.9e-09 65.1 77 50.6
BraA05t21363Z Brassica rapa HOM05D000113 ORTHO05D002571 3.9e-09 65.1 77 50.6
Lsat_1_v5_gn_9_24861 Lactuca sativa HOM05D000113 ORTHO05D002571 3.9e-09 65.1 68 58.8
ATR0064G016 Amborella trichopoda HOM05D000113 ORTHO05D002571 8.8e-09 63.9 84 42.9
AL7G28140 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 1.9e-08 62.8 115 40.0
HanXRQChr09g0270171 Helianthus annuus HOM05D000113 ORTHO05D002571 4.3e-08 61.6 61 52.5
Ciclev10024265m.g Citrus clementina HOM05D000113 ORTHO05D012125 7.4e-08 60.8 97 41.2
AUR62002552 Chenopodium quinoa HOM05D000113 ORTHO05D002571 9.7e-08 60.5 79 46.8
Nitab4.5_0004622g0020 Nicotiana tabacum HOM05D000113 ORTHO05D002571 1.7e-07 59.7 62 56.5
BcaB03g13727 Brassica carinata HOM05D000113 ORTHO05D012125 2.2e-07 59.3 80 42.5
MD08G1042900 Malus domestica HOM05D000113 ORTHO05D002571 2.2e-07 59.3 68 48.5
CDE02G1559 Ceratophyllum demersum HOM05D000113 ORTHO05D002571 2.8e-07 58.9 90 43.3
Lsat_1_v5_gn_6_69341 Lactuca sativa HOM05D000113 ORTHO05D002571 2.8e-07 58.9 63 49.2
QL10p018794 Quercus lobata HOM05D000113 ORTHO05D002571 3.7e-07 58.5 85 48.2
Atru.chr12.1784 Acer truncatum HOM05D000113 ORTHO05D012125 4.8e-07 58.2 57 54.4
DCAR_026352 Daucus carota HOM05D000113 ORTHO05D002571 3.1e-06 55.5 110 35.5
Prupe.6G014300 Prunus persica HOM05D000113 ORTHO05D012125 9.1e-06 53.9 76 43.4


User provided reference genes

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