Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 0.0e+00 3231.4 1628 100.0
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 0.0e+00 3052.7 1628 95.0
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 0.0e+00 2412.9 1659 76.1
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 0.0e+00 2350.5 1641 75.9
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 0.0e+00 2327.4 1646 75.5
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 0.0e+00 2132.8 1470 76.3
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 0.0e+00 1121.7 1424 46.5
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 6.7e-299 1031.6 1482 42.7
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 1.5e-298 1030.4 1650 40.4
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 1.4e-296 1023.8 1502 42.7
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 4.6e-292 1008.8 1687 41.4
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 8.8e-291 1004.6 670 78.7
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 1.4e-288 997.3 1663 40.0
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 1.1e-280 971.1 1658 38.5
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 1.4e-272 944.1 1635 39.1
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 1.4e-267 927.5 1617 38.9
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 3.1e-264 916.4 1781 36.3
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 3.5e-263 912.9 1668 37.2
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.0e-254 884.8 1195 45.4
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.1e-253 881.3 1195 45.4
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 2.1e-252 877.1 1708 36.1
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 2.3e-251 873.6 1753 35.9
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 2.7e-247 860.1 1680 36.7
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 3.3e-245 853.2 1734 35.6
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 4.9e-241 839.3 1676 35.7
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 2.5e-237 827.0 1716 36.0
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 1.2e-236 824.7 1590 36.5
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 6.2e-236 822.4 1663 35.9
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 1.7e-230 804.3 1704 35.1
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 8.6e-230 802.0 1688 35.2
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 1.4e-227 794.7 1498 37.3
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 3.4e-226 790.0 1669 34.3
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 8.3e-225 785.4 1662 34.7
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 1.3e-222 778.1 1636 35.0
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 8.9e-219 765.4 1658 34.6
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 5.4e-216 756.1 1687 35.2
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 1.6e-212 744.6 1674 33.2
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 6.2e-212 742.7 1656 34.6
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 6.0e-207 726.1 1651 33.2
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 6.6e-206 722.6 1764 31.8
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 1.1e-203 715.3 1733 32.9
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 6.4e-201 706.1 1720 33.8
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 6.0e-199 699.5 1749 32.1
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 3.9e-198 696.8 1692 33.3
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 6.7e-198 696.0 1670 33.3
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 1.9e-197 694.5 1717 32.1
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 3.3e-197 693.7 1660 33.0
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 1.6e-196 691.4 1657 32.8
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 8.1e-196 689.1 1660 33.0
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 5.3e-195 686.4 1713 32.4
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 6.9e-195 686.0 1672 33.0
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 9.0e-195 685.6 1687 33.4
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 9.0e-195 685.6 1680 32.4
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 1.7e-193 681.4 1684 33.0
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 4.2e-192 676.8 825 47.6
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 7.1e-192 676.0 1697 32.1
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 6.0e-191 672.9 1693 32.2
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 2.0e-186 657.9 1662 32.5
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 5.8e-186 656.4 1657 33.1
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 2.7e-183 647.5 1070 38.4
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 1.8e-182 644.8 1651 31.6
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 3.9e-182 643.7 1688 32.2
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 1.9e-181 641.3 1686 32.5
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 4.3e-181 640.2 1683 32.7
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 4.3e-181 640.2 1704 31.7
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 7.4e-181 639.4 1691 31.3
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 2.2e-180 637.9 1619 32.4
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 2.4e-179 634.4 1641 32.2
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 9.0e-179 632.5 1680 32.0
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 1.2e-178 632.1 1689 31.9
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.9e-178 629.8 1652 32.1
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 1.6e-175 621.7 1745 31.6
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.1e-174 616.7 1740 29.8
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 1.7e-172 611.7 1650 31.3
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 3.7e-172 610.5 1739 31.2
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.3e-171 606.7 1654 31.9
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.0e-170 604.7 1675 31.5
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.3e-169 602.1 1651 30.3
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 2.5e-160 571.2 800 43.2
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 4.7e-159 567.0 1102 35.2
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 1.5e-157 562.0 1637 31.3
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 3.3e-157 560.8 740 45.8
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 6.8e-142 510.0 1672 28.0
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 1.8e-139 501.9 1677 28.3
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 4.7e-135 487.3 1805 27.1
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 6.8e-134 483.4 1016 34.6
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 2.6e-133 481.5 1664 28.5
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 5.6e-128 463.8 1477 29.1
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 2.1e-127 461.8 1556 28.0
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.7e-122 444.9 1251 31.1
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 6.6e-121 440.3 1578 27.6
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 9.5e-120 436.4 1830 26.6
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 1.6e-114 419.1 1481 28.3
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 8.6e-113 413.3 661 41.0
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 5.6e-112 410.6 679 39.9
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 1.7e-105 389.0 677 39.7
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 5.1e-105 387.5 639 39.0
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 2.2e-100 372.1 798 34.7
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 2.3e-97 362.1 826 34.1
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 1.3e-95 356.3 697 35.3
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 4.2e-83 314.7 832 31.6
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.9e-76 291.2 498 39.4
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 5.1e-73 281.2 607 34.9
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 2.0e-56 226.1 519 35.6
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 5.0e-52 211.5 608 31.2
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 1.7e-44 186.4 684 27.2
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 5.5e-43 181.4 147 62.6
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 9.1e-38 164.1 459 30.3
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 2.7e-37 162.5 233 37.3
Hund11747 Selenicereus undatus HOM05D005579 ORTHO05D006775 4.1e-30 138.7 211 37.0
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 7.0e-30 137.9 224 35.3
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 3.5e-29 135.6 241 34.9
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 2.3e-28 132.9 282 33.3
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 1.5e-24 120.2 130 48.5
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 5.7e-24 118.2 513 25.0
Oeu024225.1 Olea europaea HOM05D002251 ORTHO05D006775 9.8e-16 90.9 359 29.0
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 7.0e-14 84.7 283 30.7
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 5.9e-13 81.6 213 32.4
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 4.7e-10 72.0 136 33.8
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 7.5e-08 64.7 122 34.4
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 7.5e-08 64.7 122 34.4
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 1.3e-07 63.9 206 34.0
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 1.7e-07 63.5 144 27.8
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.7e-07 62.4 109 39.4
TPR.G31959 Trifolium pratense HOM05D061576 ORTHO05D006775 3.7e-07 62.4 134 28.4
QL09p014214 Quercus lobata HOM05D005579 ORTHO05D006775 2.4e-06 59.7 96 43.8
Ah.07g206970 Amaranthus hybridus HOM05D005579 ORTHO05D006775 5.4e-06 58.5 168 28.6
Haze_13709 Corylus avellana HOM05D005579 ORTHO05D006775 9.2e-06 57.8 116 35.3


User provided reference genes

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