Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000561g0090 Nicotiana tabacum HOM05D003508 ORTHO05D017053 1.0e-60 236.5 118 100.0
Thecc.10G106000 Theobroma cacao HOM05D003508 ORTHO05D004579 6.0e-32 141.0 113 61.9
Haze_01394 Corylus avellana HOM05D003508 ORTHO05D004579 1.0e-31 140.2 112 60.7
Gohir.A13G010700 Gossypium hirsutum HOM05D003508 ORTHO05D004579 1.3e-31 139.8 113 61.9
CiPaw.13G040400 Carya illinoinensis HOM05D003508 ORTHO05D004579 1.7e-31 139.4 112 60.7
unitig_736.g22527 Utricularia gibba HOM05D003508 ORTHO05D004579 2.3e-31 139.0 112 62.5
SGA_v2.0_scaffold62G21342 Striga asiatica HOM05D003508 ORTHO05D004579 3.0e-31 138.7 112 61.6
CAN.G645.2 Capsicum annuum HOM05D003508 ORTHO05D004579 3.9e-31 138.3 112 63.4
ECA238G0717 Erigeron canadensis HOM05D003508 ORTHO05D004579 3.9e-31 138.3 112 60.7
Gorai.013G012400 Gossypium raimondii HOM05D003508 ORTHO05D004579 3.9e-31 138.3 112 61.6
Nitab4.5_0003927g0020 Nicotiana tabacum HOM05D003508 ORTHO05D004579 3.9e-31 138.3 112 61.6
Peaxi162Scf00519g00710 Petunia axillaris HOM05D003508 ORTHO05D004579 3.9e-31 138.3 112 61.6
BcaC02g09078 Brassica carinata HOM05D003508 ORTHO05D004579 5.1e-31 137.9 112 61.6
C04p38200 Brassica napus HOM05D003508 ORTHO05D004579 5.1e-31 137.9 112 61.6
Carub.0005s2084 Capsella rubella HOM05D003508 ORTHO05D004579 5.1e-31 137.9 112 62.5
CiPaw.14G033200 Carya illinoinensis HOM05D003508 ORTHO05D004579 5.1e-31 137.9 112 60.7
CsaV3_5G035560 Cucumis sativus L. HOM05D003508 ORTHO05D004579 5.1e-31 137.9 112 61.6
Hma1.2p1_0356F.1_g134090 Hydrangea macrophylla HOM05D003508 ORTHO05D004579 5.1e-31 137.9 112 61.6
MD07G1064100 Malus domestica HOM05D003508 ORTHO05D004579 5.1e-31 137.9 112 61.6
Nitab4.5_0005622g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 5.1e-31 137.9 112 62.5
Sopen04g004800 Solanum pennellii HOM05D003508 ORTHO05D004579 5.1e-31 137.9 112 62.5
GSVIVG01011287001 Vitis vinifera HOM05D003508 ORTHO05D004579 5.1e-31 137.9 112 63.4
BcaB02g08480 Brassica carinata HOM05D003508 ORTHO05D004579 6.6e-31 137.5 112 61.6
A04p05510 Brassica napus HOM05D003508 ORTHO05D004579 6.6e-31 137.5 112 62.5
BraA04t16251Z Brassica rapa HOM05D003508 ORTHO05D004579 6.6e-31 137.5 112 62.5
ClCG05G021710 Citrullus lanatus HOM05D003508 ORTHO05D004579 6.6e-31 137.5 112 60.7
COL.COLO4_24552 Corchorus olitorius HOM05D003508 ORTHO05D004579 6.6e-31 137.5 113 61.1
Dinv11847 Davidia involucrata HOM05D003508 ORTHO05D004579 6.6e-31 137.5 112 61.6
Duzib106G0726 Durio zibethinus HOM05D003508 ORTHO05D004579 6.6e-31 137.5 113 61.1
Nitab4.5_0001437g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 6.6e-31 137.5 112 61.6
SGA_v2.0_scaffold7G04100 Striga asiatica HOM05D003508 ORTHO05D004579 6.6e-31 137.5 112 60.7
Actinidia06698 Actinidia chinensis HOM05D003508 ORTHO05D004579 8.6e-31 137.1 112 60.7
Cfa010322 Carpinus fangiana HOM05D003508 ORTHO05D004579 8.6e-31 137.1 112 59.8
Sabra10G0186100 Salix brachista HOM05D003508 ORTHO05D004579 8.6e-31 137.1 112 60.7
Actinidia36696 Actinidia chinensis HOM05D003508 ORTHO05D004579 1.1e-30 136.7 112 61.6
MELO3C012357.2 Cucumis melo HOM05D003508 ORTHO05D004579 1.1e-30 136.7 112 60.7
Eucgr.J00991 Eucalyptus grandis HOM05D003508 ORTHO05D004579 1.1e-30 136.7 112 60.7
CANSAT56G3087 Cannabis sativa HOM05D003508 ORTHO05D004579 1.5e-30 136.3 112 60.7
Nitab4.5_0000691g0130 Nicotiana tabacum HOM05D003508 ORTHO05D004579 1.5e-30 136.3 112 59.8
SalBow6G1879 Salvia bowleyana HOM05D003508 ORTHO05D004579 1.5e-30 136.3 112 61.6
Sed0023449 Sechium edule HOM05D003508 ORTHO05D004579 1.5e-30 136.3 112 60.7
AUR62007446 Chenopodium quinoa HOM05D003508 ORTHO05D004579 1.9e-30 136.0 113 59.3
AUR62027288 Chenopodium quinoa HOM05D003508 ORTHO05D004579 1.9e-30 136.0 113 59.3
Lsat_1_v5_gn_0_7601 Lactuca sativa HOM05D003508 ORTHO05D004579 1.9e-30 136.0 112 59.8
Ah.02g117270 Amaranthus hybridus HOM05D003508 ORTHO05D004579 2.5e-30 135.6 113 60.2
CSS0009164 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 2.5e-30 135.6 112 60.7
Cc02_g09750 Coffea canephora HOM05D003508 ORTHO05D004579 2.5e-30 135.6 112 59.8
Manes.10G058800 Manihot esculenta HOM05D003508 ORTHO05D004579 2.5e-30 135.6 112 60.7
PGSC0003DMG400016014 Solanum tuberosum HOM05D003508 ORTHO05D004579 2.5e-30 135.6 112 61.6
HanXRQChr11g0342191 Helianthus annuus HOM05D003508 ORTHO05D004579 3.3e-30 135.2 112 58.9
Manes.07G087500 Manihot esculenta HOM05D003508 ORTHO05D004579 3.3e-30 135.2 112 60.7
TWI63G0607 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 3.3e-30 135.2 112 59.8
AT2G38700 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 4.3e-30 134.8 112 59.8
CSS0049709 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 4.3e-30 134.8 112 60.7
MD02G1256300 Malus domestica HOM05D003508 ORTHO05D004579 4.3e-30 134.8 112 59.8
Hund14639 Selenicereus undatus HOM05D003508 ORTHO05D004579 4.3e-30 134.8 113 61.1
PGSC0003DMG400023978 Solanum tuberosum HOM05D003508 ORTHO05D004579 4.3e-30 134.8 112 63.4
TWI38G0289 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 4.3e-30 134.8 112 60.7
VMungo0720G2493 Vigna mungo HOM05D003508 ORTHO05D004579 4.3e-30 134.8 112 59.8
AL4G36000 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 5.6e-30 134.4 112 59.8
EL10Ac5g12977 Beta vulgaris HOM05D003508 ORTHO05D004579 5.6e-30 134.4 113 59.3
BolC4t25395H Brassica oleracea HOM05D003508 ORTHO05D004579 5.6e-30 134.4 112 60.7
Potri.010G237900 Populus trichocarpa HOM05D003508 ORTHO05D004579 5.6e-30 134.4 112 60.7
QL04p046077 Quercus lobata HOM05D003508 ORTHO05D004579 5.6e-30 134.4 112 58.9
Hund11567 Selenicereus undatus HOM05D003508 ORTHO05D004579 5.6e-30 134.4 113 60.2
Solyc11g007020.2 Solanum lycopersicum HOM05D003508 ORTHO05D004579 5.6e-30 134.4 112 63.4
Sopen11g002940 Solanum pennellii HOM05D003508 ORTHO05D004579 5.6e-30 134.4 112 63.4
PGSC0003DMG400011919 Solanum tuberosum HOM05D003508 ORTHO05D004579 5.6e-30 134.4 113 62.8
Zm00001eb056620 Zea mays HOM05D003508 ORTHO05D004579 5.6e-30 134.4 113 61.1
MSTRG.27535 Avicennia marina HOM05D003508 ORTHO05D004579 7.3e-30 134.0 112 60.7
Peaxi162Scf00173g00046 Petunia axillaris HOM05D003508 ORTHO05D004579 7.3e-30 134.0 112 60.7
AL5G35290 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 9.6e-30 133.7 112 60.7
Dinv09607 Davidia involucrata HOM05D003508 ORTHO05D004579 9.6e-30 133.7 112 59.8
Thhalv10010411m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 9.6e-30 133.7 112 59.8
Thhalv10023484m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 9.6e-30 133.7 112 59.8
Atru.chr12.1012 Acer truncatum HOM05D003508 ORTHO05D004579 1.2e-29 133.3 112 59.8
arahy.Tifrunner.gnm1.ann1.Q6BHJ0 Arachis hypogaea HOM05D003508 ORTHO05D004579 1.2e-29 133.3 113 58.4
arahy.Tifrunner.gnm1.ann1.Y4RU6H Arachis hypogaea HOM05D003508 ORTHO05D004579 1.2e-29 133.3 113 58.4
Cpa.g.sc183.13 Carica papaya HOM05D003508 ORTHO05D004579 1.2e-29 133.3 112 60.7
PGR044G1695 Punica granatum HOM05D003508 ORTHO05D004579 1.2e-29 133.3 112 59.8
Aa31sc26G40 Aethionema arabicum HOM05D003508 ORTHO05D004579 1.6e-29 132.9 112 59.8
Carub.0004s2070 Capsella rubella HOM05D003508 ORTHO05D004579 1.6e-29 132.9 112 58.9
Ciclev10015368m.g Citrus clementina HOM05D003508 ORTHO05D004579 1.6e-29 132.9 112 59.8
Lj5g0024073 Lotus japonicus HOM05D003508 ORTHO05D004579 1.6e-29 132.9 112 59.8
RcHm_v2.0_Chr1g0332421 Rosa chinensis HOM05D003508 ORTHO05D004579 1.6e-29 132.9 112 60.7
Zm00001eb257840 Zea mays HOM05D003508 ORTHO05D004579 1.6e-29 132.9 113 60.2
Thhalv10016888m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 2.1e-29 132.5 112 58.9
THA.LOC104824218 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 2.1e-29 132.5 112 58.9
AT3G54250 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 2.8e-29 132.1 112 58.9
Migut.F00911 Erythranthe guttata HOM05D003508 ORTHO05D004579 2.8e-29 132.1 112 58.9
FAN01G1243 Fragaria x ananassa HOM05D003508 ORTHO05D004579 2.8e-29 132.1 112 58.9
FAN06G4590 Fragaria x ananassa HOM05D003508 ORTHO05D004579 2.8e-29 132.1 112 58.9
FAN10G3478 Fragaria x ananassa HOM05D003508 ORTHO05D004579 2.8e-29 132.1 112 58.9
Phvul.007G021200 Phaseolus vulgaris HOM05D003508 ORTHO05D004579 2.8e-29 132.1 112 58.0
Potri.008G021100 Populus trichocarpa HOM05D003508 ORTHO05D004579 2.8e-29 132.1 112 59.8
Sc06g0002320 Simmondsia chinensis HOM05D003508 ORTHO05D004579 2.8e-29 132.1 100 64.0
A09p47250 Brassica napus HOM05D003508 ORTHO05D004579 3.6e-29 131.7 112 58.0
C08p29490 Brassica napus HOM05D003508 ORTHO05D004579 3.6e-29 131.7 112 58.0
BraA09t40187Z Brassica rapa HOM05D003508 ORTHO05D004579 3.6e-29 131.7 112 58.0
Medtr1g112230 Medicago truncatula HOM05D003508 ORTHO05D004579 3.6e-29 131.7 112 58.9
Os02g0109100 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 3.6e-29 131.7 113 59.3
Prupe.2G078900 Prunus persica HOM05D003508 ORTHO05D004579 3.6e-29 131.7 112 59.8
CARHR133390 Cardamine hirsuta HOM05D003508 ORTHO05D004579 4.7e-29 131.3 112 57.1
CARHR164170 Cardamine hirsuta HOM05D003508 ORTHO05D004579 4.7e-29 131.3 112 59.8
Lsat_1_v5_gn_2_104600 Lactuca sativa HOM05D003508 ORTHO05D004579 4.7e-29 131.3 112 58.9
Lj3A928T54 Lonicera japonica HOM05D003508 ORTHO05D004579 4.7e-29 131.3 112 60.7
BolC8t50554H Brassica oleracea HOM05D003508 ORTHO05D004579 6.2e-29 131.0 112 58.0
Lalb_Chr21g0309221 Lupinus albus HOM05D003508 ORTHO05D004579 6.2e-29 131.0 112 58.0
Nn6g34927 Nelumbo nucifera HOM05D003508 ORTHO05D004579 6.2e-29 131.0 112 58.9
PSO339G4868 Papaver somniferum HOM05D003508 ORTHO05D004579 8.1e-29 130.6 112 58.9
PSO384G2067 Papaver somniferum HOM05D003508 ORTHO05D004579 8.1e-29 130.6 112 58.9
Sp4g21060 Schrenkiella parvula HOM05D003508 ORTHO05D004579 8.1e-29 130.6 112 59.8
Aqoxy4G02791 Aquilegia oxysepala HOM05D003508 ORTHO05D004579 1.1e-28 130.2 112 58.9
Glyma.20G109900 Glycine max HOM05D003508 ORTHO05D004579 1.1e-28 130.2 112 58.0
Lalb_Chr06g0166461 Lupinus albus HOM05D003508 ORTHO05D004579 1.1e-28 130.2 112 57.1
Aa31sc79G100 Aethionema arabicum HOM05D003508 ORTHO05D004579 1.4e-28 129.8 112 58.9
THA.LOC104811335 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 1.4e-28 129.8 112 57.1
Actinidia34720 Actinidia chinensis HOM05D003508 ORTHO05D004579 1.8e-28 129.4 106 59.4
Rhsim09G0142500 Rhododendron simsii HOM05D003508 ORTHO05D004579 1.8e-28 129.4 112 59.8
Sp5g08150 Schrenkiella parvula HOM05D003508 ORTHO05D004579 2.4e-28 129.0 112 58.9
Lalb_Chr02g0146341 Lupinus albus HOM05D003508 ORTHO05D004579 3.1e-28 128.6 112 57.1
Rhsim03G0099000 Rhododendron simsii HOM05D003508 ORTHO05D004579 3.1e-28 128.6 112 58.0
Sabra08G0014400 Salix brachista HOM05D003508 ORTHO05D004579 6.9e-28 127.5 112 58.0
Glyma.10G279800 Glycine max HOM05D003508 ORTHO05D004579 1.2e-27 126.7 112 56.2
vmacro10305 Vaccinium macrocarpon HOM05D003508 ORTHO05D004579 1.2e-27 126.7 112 58.0
Haze_03293 Corylus avellana HOM05D003508 ORTHO05D004579 1.5e-27 126.3 124 53.2
CSS0018426 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 3.4e-27 125.2 111 55.9
SHI21271 Sapria himalayana HOM05D003508 ORTHO05D004579 3.4e-27 125.2 112 54.5
MBI17_g42676_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 4.4e-27 124.8 112 55.4
TAR633G0880 Trochodendron aralioides HOM05D003508 ORTHO05D004579 4.4e-27 124.8 112 56.2
BcaNung06364 Brassica carinata HOM05D003508 ORTHO05D004579 5.8e-27 124.4 115 55.7
HPP92_006808 Vanilla planifolia HOM05D003508 ORTHO05D004579 7.6e-27 124.0 112 58.0
Eucgr.G02693 Eucalyptus grandis HOM05D003508 ORTHO05D004579 2.9e-26 122.1 107 56.1
FAN03G1980 Fragaria x ananassa HOM05D003508 ORTHO05D004579 2.9e-26 122.1 127 52.0
QL04p041546 Quercus lobata HOM05D003508 ORTHO05D004579 2.4e-25 119.0 112 55.4
ATR0081G016 Amborella trichopoda HOM05D003508 ORTHO05D004579 2.7e-24 115.5 107 55.1
AagrBONN_evm.TU.Sc2ySwM_117.3316 Anthoceros agrestis HOM05D003508 ORTHO05D004579 2.7e-24 115.5 113 54.0
FvH4_7g05610 Fragaria vesca HOM05D003508 ORTHO05D004579 2.7e-24 115.5 144 45.8
Pp3c5_15100 Physcomitrium patens HOM05D003508 ORTHO05D004579 3.5e-24 115.2 113 52.2
CBR_g26358 Chara braunii HOM05D003508 ORTHO05D004579 1.1e-22 110.2 113 54.0
Pp3c6_12700 Physcomitrium patens HOM05D003508 ORTHO05D004579 1.9e-22 109.4 113 50.4
Mapoly0007s0128 Marchantia polymorpha HOM05D003508 ORTHO05D004579 2.5e-22 109.0 113 49.6
SMO203G0120 Selaginella moellendorffii HOM05D003508 ORTHO05D004579 3.3e-22 108.6 113 51.3
Os02g0107200 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 2.8e-21 105.5 92 59.8
Rhsim03G0099400 Rhododendron simsii HOM05D003508 ORTHO05D004579 3.8e-18 95.1 122 43.4
CDE04G3073 Ceratophyllum demersum HOM05D003508 ORTHO05D004579 1.4e-17 93.2 87 58.6
Psat6g231280 Pisum sativum HOM05D003508 ORTHO05D004579 1.4e-17 93.2 113 46.9
TPR.G2474 Trifolium pratense HOM05D003508 ORTHO05D004579 1.1e-14 83.6 66 59.1
Actinidia18595 Actinidia chinensis HOM05D003508 ORTHO05D004579 4.3e-14 81.6 112 45.5
Gohir.D07G221800 Gossypium hirsutum HOM05D003508 ORTHO05D017053 1.6e-13 79.7 57 63.2
Gohir.D10G141300 Gossypium hirsutum HOM05D003508 ORTHO05D017053 2.1e-13 79.3 64 59.4
Oeu026584.1 Olea europaea HOM05D003508 ORTHO05D004579 3.7e-13 78.6 57 61.4
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 8.1e-13 77.4 57 61.4
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 8.1e-13 77.4 57 61.4
Gohir.D13G011400 Gossypium hirsutum HOM05D003508 ORTHO05D004579 8.1e-13 77.4 57 61.4
Gorai.003G053700 Gossypium raimondii HOM05D003508 ORTHO05D017053 1.1e-12 77.0 57 59.6
Gorai.008G061300 Gossypium raimondii HOM05D003508 ORTHO05D017053 1.4e-12 76.6 57 61.4
DCAR_006338 Daucus carota HOM05D003508 ORTHO05D004579 3.1e-12 75.5 57 59.6
Gorai.001G156500 Gossypium raimondii HOM05D003508 ORTHO05D017053 4.0e-12 75.1 57 59.6
Ca_25671_v3 Cicer arietinum L. HOM05D003508 ORTHO05D004579 9.0e-12 73.9 69 53.6
Haze_26564 Corylus avellana HOM05D003508 ORTHO05D004579 1.5e-11 73.2 91 42.9
Cfa022308 Carpinus fangiana HOM05D003508 ORTHO05D004579 3.4e-11 72.0 90 42.2
Gohir.D11G205701 Gossypium hirsutum HOM05D003508 ORTHO05D017053 3.4e-11 72.0 57 59.6
MBI16_g39317_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 1.1e-09 67.0 57 54.4
SEGI_06330 Sequoiadendron giganteum HOM05D003508 ORTHO05D004579 7.1e-09 64.3 66 50.0
HanXRQChr15g0478241 Helianthus annuus HOM05D003508 ORTHO05D004579 1.8e-07 59.7 63 54.0
PGSC0003DMG400011923 Solanum tuberosum HOM05D003508 ORTHO05D004579 2.3e-07 59.3 49 59.2
Gohir.D05G325100 Gossypium hirsutum HOM05D003508 ORTHO05D010805 8.7e-07 57.4 43 67.4
Gorai.009G349300 Gossypium raimondii HOM05D003508 ORTHO05D010805 8.7e-07 57.4 43 67.4
QL04p041875 Quercus lobata HOM05D003508 ORTHO05D004579 1.1e-06 57.0 48 60.4
MBI16_g04457_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 1.5e-06 56.6 48 56.2
Gohir.D10G176800 Gossypium hirsutum HOM05D003508 ORTHO05D010805 2.5e-06 55.8 43 65.1
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 3.3e-06 55.5 43 65.1
TAR636G1619 Trochodendron aralioides HOM05D003508 ORTHO05D004579 5.6e-06 54.7 41 65.9


User provided reference genes

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