Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 5.5e-245 850.5 427 100.0
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 2.3e-230 802.0 412 97.3
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 4.4e-218 761.1 433 88.7
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 1.3e-217 759.6 434 88.7
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 1.7e-217 759.2 433 88.7
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 4.3e-213 744.6 435 87.6
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 1.0e-206 723.4 433 86.4
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 1.6e-191 672.9 433 79.7
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 1.3e-190 669.8 417 81.5
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 1.1e-189 666.8 433 79.4
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 1.5e-189 666.4 395 84.3
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 2.5e-189 665.6 407 82.3
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 4.3e-189 664.8 433 78.3
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 4.3e-189 664.8 395 84.3
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 2.1e-188 662.5 434 78.6
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 2.1e-188 662.5 437 78.3
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 4.8e-188 661.4 433 78.8
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 4.8e-188 661.4 440 77.5
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 6.2e-188 661.0 436 78.2
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 6.2e-188 661.0 440 77.3
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 6.2e-188 661.0 414 81.6
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 8.1e-188 660.6 435 78.6
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 1.1e-187 660.2 433 79.0
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 1.1e-187 660.2 441 78.9
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 2.4e-187 659.1 400 82.8
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 2.4e-187 659.1 434 77.9
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 3.1e-187 658.7 434 78.3
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 3.1e-187 658.7 396 84.1
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 4.0e-187 658.3 395 83.3
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 4.0e-187 658.3 395 83.3
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 5.3e-187 657.9 435 78.9
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 6.9e-187 657.5 435 77.7
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 9.0e-187 657.1 390 83.6
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 9.0e-187 657.1 440 76.8
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 1.2e-186 656.8 434 77.6
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 1.5e-186 656.4 433 77.8
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 2.0e-186 656.0 400 82.5
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 2.0e-186 656.0 433 77.6
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.6e-186 655.6 440 77.0
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 4.5e-186 654.8 440 77.3
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 5.8e-186 654.4 433 77.4
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 5.8e-186 654.4 396 83.1
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 9.9e-186 653.7 395 82.8
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 1.7e-185 652.9 405 81.5
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 2.9e-185 652.1 437 77.8
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 2.9e-185 652.1 451 74.3
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 4.9e-185 651.4 397 81.9
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 4.9e-185 651.4 434 78.1
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 6.4e-185 651.0 435 78.2
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 8.4e-185 650.6 437 77.8
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 8.4e-185 650.6 398 82.2
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.4e-184 649.8 434 78.3
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 1.4e-184 649.8 398 81.9
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 1.4e-184 649.8 436 77.8
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 1.4e-184 649.8 436 77.8
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 1.4e-184 649.8 434 77.4
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 3.2e-184 648.7 437 78.0
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 5.5e-184 647.9 398 80.4
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 7.1e-184 647.5 434 77.4
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 9.3e-184 647.1 404 79.5
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 1.2e-183 646.7 395 82.0
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 1.6e-183 646.4 395 80.5
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 3.5e-183 645.2 434 76.5
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.8e-182 642.9 399 79.4
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 2.3e-182 642.5 395 80.3
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 8.7e-182 640.6 434 76.5
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 1.1e-181 640.2 379 84.4
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 2.5e-181 639.0 380 84.2
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 4.3e-181 638.3 420 78.1
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 7.4e-181 637.5 397 80.4
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 7.4e-181 637.5 433 75.3
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 9.6e-181 637.1 395 80.8
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 9.6e-181 637.1 395 80.0
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 4.8e-180 634.8 395 80.3
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 6.2e-180 634.4 397 79.8
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 8.2e-180 634.0 397 79.8
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 1.1e-179 633.6 396 80.1
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 1.4e-179 633.3 397 80.1
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 1.8e-179 632.9 437 75.5
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 4.0e-179 631.7 433 75.5
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 4.0e-179 631.7 418 77.5
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 1.5e-178 629.8 408 77.2
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 2.0e-178 629.4 395 79.7
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 2.6e-178 629.0 394 78.9
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 1.0e-177 627.1 397 80.1
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 1.3e-177 626.7 421 76.7
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 6.5e-177 624.4 433 74.8
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 6.5e-177 624.4 409 77.5
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 6.5e-177 624.4 433 74.1
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 8.4e-177 624.0 433 74.8
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 8.4e-177 624.0 398 79.1
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 1.9e-176 622.9 368 84.5
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 4.2e-176 621.7 398 79.9
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 5.5e-176 621.3 434 75.3
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 7.1e-176 620.9 368 83.7
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 9.3e-176 620.5 396 79.3
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 9.3e-176 620.5 395 79.7
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 1.2e-175 620.2 395 78.7
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 3.5e-175 618.6 396 78.5
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 4.6e-175 618.2 395 79.5
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 2.3e-174 615.9 442 73.8
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 2.5e-173 612.5 395 79.0
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 9.7e-173 610.5 395 77.7
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 2.8e-172 609.0 376 80.6
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 3.7e-172 608.6 459 69.7
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 2.9e-169 599.0 402 77.4
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 6.7e-166 587.8 362 83.4
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 4.8e-164 581.6 368 78.8
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 1.8e-163 579.7 431 69.1
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 2.4e-163 579.3 390 70.3
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 1.0e-161 573.9 432 68.5
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 2.2e-161 572.8 382 73.6
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 6.5e-161 571.2 324 86.1
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 7.9e-159 564.3 379 73.4
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 8.5e-153 544.3 346 79.2
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 8.8e-150 534.3 378 69.6
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 1.1e-147 527.3 378 67.7
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 1.5e-144 516.9 338 75.4
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 7.2e-144 514.6 395 68.9
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 1.6e-138 496.9 369 67.5
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 2.5e-136 489.6 360 69.2
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 4.7e-135 485.3 378 63.0
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 1.4e-126 457.2 288 79.5
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 5.4e-115 418.7 407 58.2
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 6.0e-114 415.2 299 72.2
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 7.3e-104 381.7 280 71.8
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 8.1e-95 351.7 267 70.0
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 2.0e-69 267.3 187 74.3
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 3.9e-65 253.1 308 43.8
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 3.3e-64 250.0 308 43.8
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 2.3e-49 200.7 107 88.8
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 2.2e-44 184.1 99 90.9
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 2.1e-26 124.4 118 60.2
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 8.8e-25 119.0 85 71.8
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 9.1e-22 109.0 57 84.2
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 9.4e-19 99.0 84 63.1
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 2.0e-16 91.3 84 59.5
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 3.4e-16 90.5 84 58.3
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.7e-15 88.2 258 29.8
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 3.7e-15 87.0 57 77.2
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 1.9e-11 74.7 79 53.2
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 1.5e-08 65.1 40 72.5


User provided reference genes

Program Settings