Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000324g0210 Nicotiana tabacum HOM05D000104 ORTHO05D005769 5.7e-248 860.5 451 100.0
Nitab4.5_0003890g0010 Nicotiana tabacum HOM05D000104 ORTHO05D005769 5.5e-211 737.6 437 88.6
CAN.G570.8 Capsicum annuum HOM05D000104 ORTHO05D005769 5.8e-184 647.9 434 79.0
Sopen03g015780 Solanum pennellii HOM05D000104 ORTHO05D005769 7.5e-184 647.5 434 78.1
Solyc03g063210.3 Solanum lycopersicum HOM05D000104 ORTHO05D005769 9.8e-184 647.1 440 77.3
Peaxi162Scf00258g00432 Petunia axillaris HOM05D000104 ORTHO05D005769 1.4e-174 616.7 432 77.3
Dinv19274 Davidia involucrata HOM05D000104 ORTHO05D005769 4.5e-112 409.1 443 52.6
CSS0012736 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005769 1.1e-110 404.4 443 51.9
Oeu033742.2 Olea europaea HOM05D000104 ORTHO05D005769 3.0e-108 396.4 443 51.0
Actinidia22031 Actinidia chinensis HOM05D000104 ORTHO05D005769 3.1e-105 386.3 443 50.1
Lj3A921G41 Lonicera japonica HOM05D000104 ORTHO05D005769 6.5e-103 378.6 442 48.6
Rhsim03G0007000 Rhododendron simsii HOM05D000104 ORTHO05D005769 9.4e-102 374.8 441 48.8
Cc06_g16020 Coffea canephora HOM05D000104 ORTHO05D005769 1.0e-100 371.3 435 49.4
Sabra01G0160500 Salix brachista HOM05D000104 ORTHO05D005769 3.3e-99 366.3 448 49.3
Ciclev10010891m.g Citrus clementina HOM05D000104 ORTHO05D005769 3.7e-98 362.8 443 50.3
Haze_19977 Corylus avellana HOM05D000104 ORTHO05D005769 1.1e-97 361.3 450 48.0
TWI14G1199 Tripterygium wilfordii HOM05D000104 ORTHO05D005769 7.0e-97 358.6 436 47.9
Potri.003G022100 Populus trichocarpa HOM05D000104 ORTHO05D005769 2.7e-96 356.7 445 48.1
RcHm_v2.0_Chr5g0025621 Rosa chinensis HOM05D000104 ORTHO05D005769 4.5e-96 355.9 455 49.5
Sabra03G0014100 Salix brachista HOM05D000104 ORTHO05D005769 3.8e-95 352.8 441 47.8
Lj3C919G8 Lonicera japonica HOM05D000104 ORTHO05D005769 1.1e-94 351.3 438 47.7
CiPaw.10G027000 Carya illinoinensis HOM05D000104 ORTHO05D005769 5.5e-94 349.0 444 48.0
SalBow6G1274 Salvia bowleyana HOM05D000104 ORTHO05D005769 7.2e-94 348.6 433 47.1
MSTRG.19900 Avicennia marina HOM05D000104 ORTHO05D005769 1.2e-93 347.8 421 47.7
Potri.001G207700 Populus trichocarpa HOM05D000104 ORTHO05D005769 6.1e-93 345.5 435 47.4
QL07p023509 Quercus lobata HOM05D000104 ORTHO05D005769 1.8e-92 344.0 423 49.6
Migut.J01827 Erythranthe guttata HOM05D000104 ORTHO05D005769 2.3e-92 343.6 432 47.9
TWI23G0183 Tripterygium wilfordii HOM05D000104 ORTHO05D005769 3.0e-92 343.2 438 47.9
vmacro07923 Vaccinium macrocarpon HOM05D000104 ORTHO05D005769 2.0e-91 340.5 444 45.9
Prupe.4G135700 Prunus persica HOM05D000104 ORTHO05D005769 3.4e-91 339.7 455 47.3
Manes.15G110200 Manihot esculenta HOM05D000104 ORTHO05D005769 7.5e-91 338.6 445 47.4
CiPaw.09G030900 Carya illinoinensis HOM05D000104 ORTHO05D005769 2.2e-90 337.0 419 47.5
Duzib177G0813 Durio zibethinus HOM05D000104 ORTHO05D005769 2.2e-90 337.0 429 48.0
FAN21G3997 Fragaria x ananassa HOM05D000104 ORTHO05D005769 2.8e-90 336.7 457 47.0
FAN25G3235 Fragaria x ananassa HOM05D000104 ORTHO05D005769 4.8e-90 335.9 458 47.2
MD10G1206600 Malus domestica HOM05D000104 ORTHO05D005769 4.8e-90 335.9 457 46.6
GSVIVG01033511001 Vitis vinifera HOM05D000104 ORTHO05D005769 1.8e-89 334.0 444 45.9
DCAR_006645 Daucus carota HOM05D000104 ORTHO05D005769 1.6e-88 330.9 442 47.1
Thecc.05G185200 Theobroma cacao HOM05D000104 ORTHO05D005769 3.5e-88 329.7 439 46.5
Gohir.A08G227300 Gossypium hirsutum HOM05D000104 ORTHO05D005769 4.5e-88 329.3 427 46.4
Gohir.D08G247700 Gossypium hirsutum HOM05D000104 ORTHO05D005769 5.9e-88 328.9 427 46.6
Gorai.004G264200 Gossypium raimondii HOM05D000104 ORTHO05D005769 7.7e-88 328.6 427 46.6
CANSAT64G2572 Cannabis sativa HOM05D000104 ORTHO05D005769 1.0e-87 328.2 448 47.3
ClCG10G017460 Citrullus lanatus HOM05D000104 ORTHO05D005769 1.0e-87 328.2 446 47.8
TAR381G0643 Trochodendron aralioides HOM05D000104 ORTHO05D005769 1.7e-87 327.4 426 47.4
FAN16G1962 Fragaria x ananassa HOM05D000104 ORTHO05D005769 4.2e-86 322.8 451 45.9
Nn5g28295 Nelumbo nucifera HOM05D000104 ORTHO05D005769 1.6e-85 320.9 430 47.7
Lalb_Chr21g0316431 Lupinus albus HOM05D000104 ORTHO05D005769 2.8e-85 320.1 421 46.1
CsaV3_3G038900 Cucumis sativus L. HOM05D000104 ORTHO05D005769 3.6e-85 319.7 447 47.0
Phvul.007G259200 Phaseolus vulgaris HOM05D000104 ORTHO05D005769 1.4e-84 317.8 438 46.6
FvH4_3g15170 Fragaria vesca HOM05D000104 ORTHO05D005769 3.0e-84 316.6 451 45.2
FAN11G3896 Fragaria x ananassa HOM05D000104 ORTHO05D005769 8.9e-84 315.1 451 45.0
VMungo0720G3110 Vigna mungo HOM05D000104 ORTHO05D005769 8.9e-84 315.1 444 45.9
Cpa.g.sc34.20 Carica papaya HOM05D000104 ORTHO05D005769 2.6e-83 313.5 449 43.7
Sed0011551 Sechium edule HOM05D000104 ORTHO05D005769 2.6e-83 313.5 416 47.6
Glyma.09G112200 Glycine max HOM05D000104 ORTHO05D005769 4.4e-83 312.8 432 45.4
Actinidia40431 Actinidia chinensis HOM05D000104 ORTHO05D005769 2.8e-82 310.1 387 48.1
Medtr1g053955 Medicago truncatula HOM05D000104 ORTHO05D005769 6.3e-82 308.9 420 43.8
AUR62018509 Chenopodium quinoa HOM05D000104 ORTHO05D005769 7.8e-80 302.0 418 43.8
MELO3C009633.2 Cucumis melo HOM05D000104 ORTHO05D005769 7.8e-80 302.0 481 43.7
Psat4g106680 Pisum sativum HOM05D000104 ORTHO05D005769 2.3e-79 300.4 423 45.2
MBI16_g14599_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 5.6e-78 295.8 427 45.2
Hund17598 Selenicereus undatus HOM05D000104 ORTHO05D005769 5.2e-76 289.3 448 41.1
Sc11g0006160 Simmondsia chinensis HOM05D000104 ORTHO05D005769 8.9e-76 288.5 421 42.5
SGA_v2.0_scaffold105G30483 Striga asiatica HOM05D000104 ORTHO05D005769 1.2e-75 288.1 373 43.7
MBI10_g00717_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 2.0e-75 287.3 432 43.8
Aqoxy4G02068 Aquilegia oxysepala HOM05D000104 ORTHO05D005769 5.8e-75 285.8 433 42.5
Glyma.02G174100 Glycine max HOM05D000104 ORTHO05D005769 9.8e-75 285.0 438 42.5
Carub.0003s1218 Capsella rubella HOM05D000104 ORTHO05D005769 1.3e-74 284.6 420 44.0
Thhalv10019875m.g Eutrema salsugineum HOM05D000104 ORTHO05D005769 1.3e-74 284.6 445 44.0
MBI10_g44388_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 1.3e-74 284.6 434 44.0
THA.LOC104826283 Tarenaya hassleriana HOM05D000104 ORTHO05D005769 6.4e-74 282.3 446 42.2
CARHR087340 Cardamine hirsuta HOM05D000104 ORTHO05D005769 1.4e-73 281.2 457 43.3
Sp3g10970 Schrenkiella parvula HOM05D000104 ORTHO05D005769 2.4e-73 280.4 423 44.2
SGA_v2.0_scaffold69G23071 Striga asiatica HOM05D000104 ORTHO05D005769 1.2e-72 278.1 388 42.5
TPR.G27751 Trifolium pratense HOM05D000104 ORTHO05D005769 4.6e-72 276.2 418 42.6
Ah.13g077720 Amaranthus hybridus HOM05D000104 ORTHO05D005769 1.7e-71 274.2 440 39.1
AL3G24490 Arabidopsis lyrata HOM05D000104 ORTHO05D005769 1.1e-70 271.6 424 43.6
Aa31LG8G90 Aethionema arabicum HOM05D000104 ORTHO05D005769 9.5e-70 268.5 425 43.8
AT3G12810 Arabidopsis thaliana HOM05D000104 ORTHO05D005769 2.1e-69 267.3 455 42.0
HPP92_024595 Vanilla planifolia HOM05D000104 ORTHO05D005769 4.7e-69 266.2 442 42.1
Ca_25705_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005769 1.8e-68 264.2 426 41.5
A05p36660 Brassica napus HOM05D000104 ORTHO05D005769 3.1e-68 263.5 416 43.3
ECA248G0087 Erigeron canadensis HOM05D000104 ORTHO05D005769 4.0e-68 263.1 432 42.4
BraA05t22469Z Brassica rapa HOM05D000104 ORTHO05D005769 8.9e-68 261.9 416 43.0
PSO170G6710 Papaver somniferum HOM05D000104 ORTHO05D005769 1.2e-67 261.5 430 41.2
EL10Ac3g07414 Beta vulgaris HOM05D000104 ORTHO05D005769 2.6e-67 260.4 516 35.3
Lsat_1_v5_gn_1_55460 Lactuca sativa HOM05D000104 ORTHO05D005769 5.8e-67 259.2 408 39.7
PSO528G0284 Papaver somniferum HOM05D000104 ORTHO05D005769 7.5e-67 258.8 429 40.6
Atru.chr8.1090 Acer truncatum HOM05D000104 ORTHO05D005769 1.3e-66 258.1 316 48.1
Eucgr.K01834 Eucalyptus grandis HOM05D000104 ORTHO05D005769 1.7e-66 257.7 421 42.5
PGR142G4395 Punica granatum HOM05D000104 ORTHO05D005769 1.1e-65 255.0 427 39.8
BcaC05g29235 Brassica carinata HOM05D000104 ORTHO05D005769 1.9e-65 254.2 416 42.5
C05p55090 Brassica napus HOM05D000104 ORTHO05D005769 4.1e-65 253.1 416 42.5
BcaB06g25509 Brassica carinata HOM05D000104 ORTHO05D005769 9.2e-65 251.9 423 42.1
BolC5t34177H Brassica oleracea HOM05D000104 ORTHO05D005769 3.5e-64 250.0 416 42.1
HanXRQChr01g0026921 Helianthus annuus HOM05D000104 ORTHO05D005769 4.6e-64 249.6 371 42.3
HanXRQChr11g0348031 Helianthus annuus HOM05D000104 ORTHO05D005769 1.7e-63 247.7 345 43.5
CDE05G2237 Ceratophyllum demersum HOM05D000104 ORTHO05D005769 1.6e-61 241.1 441 38.8
unitig_26.g9068 Utricularia gibba HOM05D000104 ORTHO05D005769 4.7e-61 239.6 392 39.8
COL.COLO4_22907 Corchorus olitorius HOM05D000104 ORTHO05D005769 2.9e-58 230.3 439 36.4
SHI16563 Sapria himalayana HOM05D000104 ORTHO05D005769 1.4e-57 228.0 470 37.2
ATR1152G044 Amborella trichopoda HOM05D000104 ORTHO05D005769 1.3e-55 221.5 435 37.9
Os02g0689800 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D005769 8.6e-55 218.8 424 36.3
Oeu040390.1 Olea europaea HOM05D000104 ORTHO05D005769 2.9e-50 203.8 223 51.6
Zm00001eb251100 Zea mays HOM05D000104 ORTHO05D005769 4.6e-48 196.4 316 36.4
Lj5g0023468 Lotus japonicus HOM05D000104 ORTHO05D005769 1.3e-45 188.3 267 47.2
Zm00001eb187690 Zea mays HOM05D000104 ORTHO05D005769 1.1e-44 185.3 417 31.9
Mapoly0111s0052 Marchantia polymorpha HOM05D000104 ORTHO05D005769 2.8e-37 160.6 322 35.1
Pp3c3_30220 Physcomitrium patens HOM05D000104 ORTHO05D005769 7.9e-32 142.5 358 33.0
Pp3c10_13800 Physcomitrium patens HOM05D000104 ORTHO05D005769 3.0e-31 140.6 405 31.1
AagrBONN_evm.TU.Sc2ySwM_340.21 Anthoceros agrestis HOM05D000104 ORTHO05D005769 1.0e-26 125.6 389 28.3
CBR_g19274 Chara braunii HOM05D000104 ORTHO05D005769 3.3e-22 110.5 184 34.8
Dinv14287 Davidia involucrata HOM05D000104 ORTHO05D005769 5.3e-12 76.6 93 52.7
Psat3g174280 Pisum sativum HOM05D001700 ORTHO05D005769 6.9e-12 76.3 194 34.0
C03p54320 Brassica napus HOM05D002628 ORTHO05D002785 1.5e-06 58.5 135 26.7
Pp3c7_10800 Physcomitrium patens HOM05D002628 ORTHO05D002785 2.0e-06 58.2 124 29.8
BcaC01g03251 Brassica carinata HOM05D002628 ORTHO05D002785 2.5e-06 57.8 135 26.7
A03p43970 Brassica napus HOM05D002628 ORTHO05D002785 4.3e-06 57.0 135 26.7
Lalb_Chr03g0041701 Lupinus albus HOM05D002628 ORTHO05D002785 5.7e-06 56.6 129 28.7
BolC3t17718H Brassica oleracea HOM05D002628 ORTHO05D002785 7.4e-06 56.2 152 27.0
BraA03t13528Z Brassica rapa HOM05D002628 ORTHO05D002785 9.7e-06 55.8 133 26.3


User provided reference genes

Program Settings