Gene: Sopen03g015780

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g015780
  • Transcript Identifier Sopen03g015780.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 32006705-32031474 : negative

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g015780.1

Descriptions

  • Description Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6). | PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1) | FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding | INVOLVED IN: in 6 processes | LOCATED IN: SWI/SNF complex, cell wall, chromatin remodeling complex | EXPRESSED IN: 18 plant structures | EXPRESSED DURING: 9 growth stages | CONTAINS InterPro DOMAIN/s: HSA , HAS subgroup , Helicase/SANT-associated, DNA binding , SNF2-related , MYB-like , SANT, DNA-binding , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: INO80 ortholog
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048441
ISO
PLAZA Integrative Orthologypetal development AT3G12810
GO:0048451
ISO
PLAZA Integrative Orthologypetal formation AT3G12810
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT3G12810
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT3G12810
GO:0009910
ISO
PLAZA Integrative Orthologynegative regulation of flower development AT3G12810

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G12810
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc03g063220.2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT3G12810

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR038718 SNF2-like, N-terminal domain superfamily
IPR001650 Helicase, C-terminal
IPR000330 SNF2, N-terminal
IPR014012 Helicase/SANT-associated domain
Mapman id Description
12.4.4.1 Chromatin organisation.nucleosome remodeling.SWR1 chromatin remodeling complex.ATPase component PIE1