Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000312g0350 Nicotiana tabacum HOM05D014209 ORTHO05D004234 2.8e-252 874.8 435 100.0
Nitab4.5_0003019g0040 Nicotiana tabacum HOM05D014209 ORTHO05D285465 7.1e-139 498.0 395 70.1
Nitab4.5_0000444g0300 Nicotiana tabacum HOM05D014209 ORTHO05D285326 1.5e-117 427.2 342 68.1
Nitab4.5_0002084g0020 Nicotiana tabacum HOM05D014209 ORTHO05D004234 6.5e-100 368.6 435 50.6
Nitab4.5_0001800g0200 Nicotiana tabacum HOM05D014209 ORTHO05D285343 4.5e-85 319.3 316 60.1
Nitab4.5_0003147g0010 Nicotiana tabacum HOM05D014209 ORTHO05D285349 1.2e-53 214.9 188 60.1
Nitab4.5_0003302g0060 Nicotiana tabacum HOM05D014209 ORTHO05D285992 4.7e-42 176.4 203 52.7
Nitab4.5_0003302g0090 Nicotiana tabacum HOM05D014209 ORTHO05D286017 1.7e-39 167.9 137 66.4
Nitab4.5_0003147g0040 Nicotiana tabacum HOM05D014209 ORTHO05D283984 6.2e-34 149.4 112 70.5
Nitab4.5_0003147g0020 Nicotiana tabacum HOM05D014209 ORTHO05D286568 2.6e-24 117.5 103 61.2
MSTRG.18657 Avicennia marina HOM05D001716 ORTHO05D004234 6.7e-12 76.3 61 63.9
Gohir.D05G082300 Gossypium hirsutum HOM05D001716 ORTHO05D004234 6.7e-12 76.3 61 63.9
Gorai.009G083900 Gossypium raimondii HOM05D001716 ORTHO05D004234 6.7e-12 76.3 61 63.9
Potri.004G199100 Populus trichocarpa HOM05D001716 ORTHO05D004234 8.7e-12 75.9 61 63.9
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 8.7e-12 75.9 61 63.9
Atru.chr3.3167 Acer truncatum HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Actinidia03732 Actinidia chinensis HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
ATR0115G019 Amborella trichopoda HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Aqoxy3G01288 Aquilegia oxysepala HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
arahy.Tifrunner.gnm1.ann1.07RPJW Arachis hypogaea HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
arahy.Tifrunner.gnm1.ann1.K86VTF Arachis hypogaea HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
MSTRG.21126 Avicennia marina HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
CSS0009123 Camellia sinensis var. sinensis HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
CSS0024984 Camellia sinensis var. sinensis HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
CANSAT01G3043 Cannabis sativa HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
CAN.G631.23 Capsicum annuum HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Cpa.g.sc195.28 Carica papaya HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
CiPaw.14G097900 Carya illinoinensis HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
AUR62007270 Chenopodium quinoa HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
AUR62018729 Chenopodium quinoa HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Ca_15874_v3 Cicer arietinum L. HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Ciclev10011670m.g Citrus clementina HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Cc01_g11170 Coffea canephora HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Haze_23345 Corylus avellana HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
DCAR_006059 Daucus carota HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Dinv32751 Davidia involucrata HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Migut.L01693 Erythranthe guttata HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Eucgr.J00524 Eucalyptus grandis HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
FvH4_3g34140 Fragaria vesca HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
FAN11G1436 Fragaria x ananassa HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
FAN16G0345 Fragaria x ananassa HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
FAN21G3845 Fragaria x ananassa HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
FAN25G1324 Fragaria x ananassa HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
FAN25G1887 Fragaria x ananassa HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Glyma.07G019000 Glycine max HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Glyma.08G204200 Glycine max HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Gohir.A09G097100 Gossypium hirsutum HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Gohir.D09G096900 Gossypium hirsutum HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Gorai.006G113600 Gossypium raimondii HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
HanXRQChr14g0452881 Helianthus annuus HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Lj2A1029T33 Lonicera japonica HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Lj1g0022809 Lotus japonicus HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Lj4g0002833 Lotus japonicus HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
LjContig00081g0024923 Lotus japonicus HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
MBI18_g19079_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
MD03G1150000 Malus domestica HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
MD11G1168700 Malus domestica HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Manes.04G001300 Manihot esculenta HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Medtr3g104080 Medicago truncatula HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Nn4g22340 Nelumbo nucifera HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Nitab4.5_0000650g0210 Nicotiana tabacum HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Nitab4.5_0011114g0040 Nicotiana tabacum HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Oeu030180.1 Olea europaea HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
PSO339G4331 Papaver somniferum HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
PSO384G0177 Papaver somniferum HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Peaxi162Scf00270g00813 Petunia axillaris HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Phvul.010G148200 Phaseolus vulgaris HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Psat5g037320 Pisum sativum HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Prupe.6G137000 Prunus persica HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
PGR119G1888 Punica granatum HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
QL08p000280 Quercus lobata HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Rhsim01G0217300 Rhododendron simsii HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
RcHm_v2.0_Chr5g0061781 Rosa chinensis HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
RcHm_v2.0_Chr6g0278081 Rosa chinensis HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Sed0005678 Sechium edule HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Sed0012939 Sechium edule HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Sc21g0006950 Simmondsia chinensis HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Solyc06g062350.4 Solanum lycopersicum HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Solyc11g069370.3 Solanum lycopersicum HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Sopen06g021570 Solanum pennellii HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Sopen11g028090 Solanum pennellii HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
PGSC0003DMG400008103 Solanum tuberosum HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
PGSC0003DMG402016772 Solanum tuberosum HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
SGA_v2.0_scaffold196G40980 Striga asiatica HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
SGA_v2.0_scaffold7G04105 Striga asiatica HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
THA.LOC104799554 Tarenaya hassleriana HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Thecc.09G278500 Theobroma cacao HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
TPR.G25359 Trifolium pratense HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
TAR633G2130 Trochodendron aralioides HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
vmacro14441 Vaccinium macrocarpon HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
HPP92_018992 Vanilla planifolia HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
VMungo0331G1056 Vigna mungo HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
GSVIVG01025181001 Vitis vinifera HOM05D001716 ORTHO05D004234 1.1e-11 75.5 61 63.9
Pp3c16_21430 Physcomitrium patens HOM05D001716 ORTHO05D004234 1.9e-11 74.7 61 62.3
Potri.009G160600 Populus trichocarpa HOM05D001716 ORTHO05D004234 1.9e-11 74.7 61 62.3
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 1.9e-11 74.7 61 63.9
ClCG10G015440 Citrullus lanatus HOM05D001716 ORTHO05D004234 2.5e-11 74.3 61 62.3
MELO3C009838.2 Cucumis melo HOM05D001716 ORTHO05D004234 2.5e-11 74.3 61 62.3
CsaV3_3G041050 Cucumis sativus L. HOM05D001716 ORTHO05D004234 2.5e-11 74.3 61 62.3
Duzib150G0371 Durio zibethinus HOM05D001716 ORTHO05D004234 2.5e-11 74.3 61 62.3
FAN20G2299 Fragaria x ananassa HOM05D001716 ORTHO05D004234 2.5e-11 74.3 61 62.3
Lsat_1_v5_gn_2_98340 Lactuca sativa HOM05D001716 ORTHO05D004234 2.5e-11 74.3 61 62.3
Lalb_Chr14g0373181 Lupinus albus HOM05D001716 ORTHO05D004234 2.5e-11 74.3 61 62.3
Lalb_Chr22g0351411 Lupinus albus HOM05D001716 ORTHO05D004234 2.5e-11 74.3 61 62.3
Nn3g16472 Nelumbo nucifera HOM05D001716 ORTHO05D004234 2.5e-11 74.3 61 62.3
Os07g0178900 Oryza sativa ssp. japonica HOM05D001716 ORTHO05D004234 2.5e-11 74.3 61 62.3
TWI15G0368 Tripterygium wilfordii HOM05D001716 ORTHO05D004234 2.5e-11 74.3 61 62.3
Ah.12g054910 Amaranthus hybridus HOM05D001716 ORTHO05D004234 3.3e-11 73.9 61 62.3
EL10Ac5g12141 Beta vulgaris HOM05D001716 ORTHO05D004234 3.3e-11 73.9 60 63.3
Gohir.A05G079400 Gossypium hirsutum HOM05D001716 ORTHO05D004234 3.3e-11 73.9 60 63.3
CDE02G4288 Ceratophyllum demersum HOM05D001716 ORTHO05D004234 4.3e-11 73.6 61 60.7
Mapoly0108s0031 Marchantia polymorpha HOM05D001716 ORTHO05D004234 4.3e-11 73.6 61 60.7
Nitab4.5_0005621g0140 Nicotiana tabacum HOM05D001716 ORTHO05D004234 4.3e-11 73.6 61 62.3
SMO351G0419 Selaginella moellendorffii HOM05D001716 ORTHO05D004234 4.3e-11 73.6 61 60.7
TAR362G0006 Trochodendron aralioides HOM05D001716 ORTHO05D004234 4.3e-11 73.6 61 65.6
TAR623G1135 Trochodendron aralioides HOM05D001716 ORTHO05D004234 4.3e-11 73.6 61 63.9
ECA236G0721 Erigeron canadensis HOM05D001716 ORTHO05D004234 5.7e-11 73.2 61 62.3
FvH4_2g15320 Fragaria vesca HOM05D001716 ORTHO05D004234 5.7e-11 73.2 61 60.7
Os01g0837500 Oryza sativa ssp. japonica HOM05D001716 ORTHO05D004234 5.7e-11 73.2 61 60.7
unitig_747.g21999 Utricularia gibba HOM05D001716 ORTHO05D004234 5.7e-11 73.2 61 62.3
Zm00001eb208840 Zea mays HOM05D001716 ORTHO05D004234 5.7e-11 73.2 61 60.7
Zm00001eb231050 Zea mays HOM05D001716 ORTHO05D004234 5.7e-11 73.2 61 60.7
CBR_g52323 Chara braunii HOM05D001716 ORTHO05D004234 7.4e-11 72.8 61 60.7
Oeu001267.3 Olea europaea HOM05D001716 ORTHO05D004234 7.4e-11 72.8 61 62.3
Aa31LG1G13210 Aethionema arabicum HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
AagrBONN_evm.TU.Sc2ySwM_368.3436 Anthoceros agrestis HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 59.0
AL6G33350 Arabidopsis lyrata HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
AT5G22330 Arabidopsis thaliana HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
BcaB01g04715 Brassica carinata HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
BcaB08g36439 Brassica carinata HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
BcaC01g06588 Brassica carinata HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
BcaC03g13875 Brassica carinata HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
BcaC04g19566 Brassica carinata HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
A03p10690 Brassica napus HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
A10p18490 Brassica napus HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
BNapus_Darmor_BZH_scaffold_38p00730 Brassica napus HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
C02p10820 Brassica napus HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
C03p12300 Brassica napus HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
C09p54240 Brassica napus HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
BolC2t07150H Brassica oleracea HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
BolC3t13703H Brassica oleracea HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
BolC9t58299H Brassica oleracea HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
BraA03t10381Z Brassica rapa HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
BraA10t43929Z Brassica rapa HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
Carub.0006s2007 Capsella rubella HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
CARHR191210 Cardamine hirsuta HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
Thhalv10013490m.g Eutrema salsugineum HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
Lalb_Chr01g0013001 Lupinus albus HOM05D001716 ORTHO05D004234 9.6e-11 72.4 60 61.7
Sp6g22910 Schrenkiella parvula HOM05D001716 ORTHO05D004234 9.6e-11 72.4 61 62.3
PGR102G0473 Punica granatum HOM05D001716 ORTHO05D004234 1.3e-10 72.0 65 58.5
CBR_g72636 Chara braunii HOM05D001716 ORTHO05D004234 1.6e-10 71.6 61 59.0
SEGI_07638 Sequoiadendron giganteum HOM05D001716 ORTHO05D004234 2.8e-10 70.9 61 59.0
Peaxi162Scf00101g00092 Petunia axillaris HOM05D001716 ORTHO05D004234 3.7e-10 70.5 61 59.0
PRCOL_00001022 Prasinoderma coloniale HOM05D001716 ORTHO05D004234 1.1e-09 68.9 61 54.1
Medtr6g023370 Medicago truncatula HOM05D001716 ORTHO05D004234 4.1e-09 67.0 61 60.7
HPP92_019095 Vanilla planifolia HOM05D001716 ORTHO05D004234 5.3e-09 66.6 57 59.6
Lj1C191T4 Lonicera japonica HOM05D001716 ORTHO05D004234 2.6e-08 64.3 70 52.9
MCO03G216 Micromonas commoda HOM05D001716 ORTHO05D004234 4.5e-08 63.5 61 50.8
Cre09.g414050 Chlamydomonas reinhardtii HOM05D001716 ORTHO05D004234 5.9e-08 63.2 61 49.2
Nitab4.5_0003147g0050 Nicotiana tabacum HOM05D014209 ORTHO05D284015 5.9e-08 63.2 34 88.2
BcaC01g06591 Brassica carinata HOM05D001716 ORTHO05D004234 1.7e-07 61.6 135 34.8
Haze_26292 Corylus avellana HOM05D001716 ORTHO05D004234 3.8e-07 60.5 59 50.8
Nitab4.5_0001534g0060 Nicotiana tabacum HOM05D016109 ORTHO05D010293 1.1e-06 58.9 96 44.8
Nitab4.5_0002063g0030 Nicotiana tabacum HOM05D027478 ORTHO05D008893 1.1e-06 58.9 73 45.2
Nitab4.5_0008569g0020 Nicotiana tabacum HOM05D000200 ORTHO05D000405 1.1e-06 58.9 126 39.7
BcaB05g22733 Brassica carinata HOM05D001716 ORTHO05D004234 1.4e-06 58.5 77 48.1
QL01p011839 Quercus lobata HOM05D001716 ORTHO05D004234 1.4e-06 58.5 45 64.4
BcaC04g23002 Brassica carinata HOM05D003214 ORTHO05D004330 2.5e-06 57.8 66 47.0
A09p11160 Brassica napus HOM05D003214 ORTHO05D004330 2.5e-06 57.8 66 47.0
C09p13150 Brassica napus HOM05D003214 ORTHO05D004330 2.5e-06 57.8 66 47.0
BolC9t54210H Brassica oleracea HOM05D003214 ORTHO05D004330 2.5e-06 57.8 66 47.0
BraA09t36758Z Brassica rapa HOM05D003214 ORTHO05D004330 2.5e-06 57.8 66 47.0
Hma1.2p1_1031F.1_g250030 Hydrangea macrophylla HOM05D001716 ORTHO05D004234 2.5e-06 57.8 81 45.7
TAR362G0106 Trochodendron aralioides HOM05D001716 ORTHO05D004234 2.5e-06 57.8 50 64.0
AL3G49700 Arabidopsis lyrata HOM05D003214 ORTHO05D004330 3.2e-06 57.4 66 47.0
Carub.0003s3076 Capsella rubella HOM05D003214 ORTHO05D004330 3.2e-06 57.4 66 47.0
CDE06G2036 Ceratophyllum demersum HOM05D001716 ORTHO05D004234 3.2e-06 57.4 45 62.2
Nitab4.5_0005007g0010 Nicotiana tabacum HOM05D009415 ORTHO05D283421 4.2e-06 57.0 159 29.6
Nitab4.5_0010481g0010 Nicotiana tabacum HOM05D010154 ORTHO05D010293 4.2e-06 57.0 101 37.6
Sp3g30230 Schrenkiella parvula HOM05D003214 ORTHO05D004330 4.2e-06 57.0 66 47.0
Peaxi162Scf00078g01329 Petunia axillaris HOM05D003214 ORTHO05D004330 9.3e-06 55.8 53 58.5


User provided reference genes

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