Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 3408.6 1788 100.0
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 2775.3 1834 81.5
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 2408.6 2064 65.0
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 2402.9 1990 66.0
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 0.0e+00 2393.2 1617 77.0
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 2018.0 2001 57.3
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 2004.2 2001 57.0
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 0.0e+00 1889.0 1627 63.2
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 0.0e+00 1748.0 1650 59.3
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 0.0e+00 1738.4 1659 58.6
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 0.0e+00 1728.4 1644 58.3
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1717.6 1650 58.1
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 0.0e+00 1682.5 1650 56.8
Peaxi162Scf00094g01313 Petunia axillaris HOM05D003688 ORTHO05D004338 0.0e+00 1665.6 1161 75.1
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 0.0e+00 1661.0 1637 56.2
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 0.0e+00 1660.2 1633 56.7
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 0.0e+00 1612.0 1649 55.6
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 0.0e+00 1584.3 1657 54.0
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 0.0e+00 1560.8 1652 53.6
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 0.0e+00 1557.7 1647 54.2
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 0.0e+00 1548.1 1662 53.1
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 0.0e+00 1543.9 1640 53.0
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1533.9 1669 53.5
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 0.0e+00 1520.4 1648 52.1
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 0.0e+00 1519.2 1653 52.8
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 0.0e+00 1517.3 1661 52.2
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 0.0e+00 1512.7 1654 52.7
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1502.3 1656 52.5
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1498.0 1656 52.2
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 0.0e+00 1494.2 1650 52.2
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1475.7 1680 51.3
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1473.8 1651 51.8
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1472.2 1658 51.1
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1471.4 1695 50.2
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1466.1 1732 49.5
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1463.7 1693 49.9
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1458.7 1713 49.3
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 0.0e+00 1458.0 1660 52.0
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 0.0e+00 1456.8 1694 49.8
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1452.6 1694 49.8
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 0.0e+00 1450.3 1646 51.5
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1448.7 1652 51.2
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 0.0e+00 1443.3 1654 50.9
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1443.3 1731 49.2
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1441.0 1648 50.2
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1441.0 1642 50.6
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1440.6 1660 50.1
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1436.8 1637 50.8
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1435.2 1613 50.7
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 0.0e+00 1431.8 1653 50.9
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1431.8 1661 50.2
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 0.0e+00 1431.0 1639 51.7
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 0.0e+00 1429.5 1643 51.1
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 0.0e+00 1426.4 1643 50.9
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 0.0e+00 1422.1 1645 51.1
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1415.2 1654 49.9
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 0.0e+00 1409.0 1649 49.4
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 0.0e+00 1404.8 1638 50.7
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 0.0e+00 1401.0 1656 50.6
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 0.0e+00 1380.9 1648 48.3
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 0.0e+00 1377.5 1646 48.7
Nitab4.5_0003845g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 1371.3 1189 63.4
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1369.8 1646 49.0
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 0.0e+00 1364.0 1638 48.9
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1361.3 1645 49.2
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1360.1 1650 48.2
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1357.0 1659 48.9
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1355.1 1642 48.8
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 0.0e+00 1354.3 1648 47.8
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 0.0e+00 1353.2 1672 48.3
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 0.0e+00 1344.7 1638 49.1
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1333.9 1660 48.6
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 0.0e+00 1324.7 1652 47.5
Nitab4.5_0006677g0040 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 1317.0 1150 62.8
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1316.6 1687 47.6
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1314.3 1641 47.7
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1312.4 1654 47.0
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1305.8 1637 47.2
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1303.9 1682 47.5
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1302.0 1651 46.0
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1292.7 1688 47.4
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1282.3 1647 47.1
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1272.3 1687 45.8
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1260.7 1666 46.0
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1260.4 1665 46.2
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 0.0e+00 1253.4 1669 45.7
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1231.5 1629 46.7
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1224.2 1651 45.5
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1210.7 1651 45.2
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1201.8 1651 45.1
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1196.8 1648 44.1
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 0.0e+00 1156.0 1631 44.4
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 0.0e+00 1150.6 1632 43.9
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1148.7 1626 43.9
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 0.0e+00 1144.8 1256 52.3
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 1138.6 1625 43.3
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 0.0e+00 1137.1 1617 43.6
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 0.0e+00 1135.6 1622 43.6
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1134.8 1625 43.4
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 0.0e+00 1131.7 1625 43.3
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 0.0e+00 1130.5 1635 43.8
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 1130.5 1617 43.4
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 0.0e+00 1124.0 1623 42.4
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 0.0e+00 1123.6 1625 43.3
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1115.1 1643 43.0
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 0.0e+00 1112.1 1643 43.0
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 0.0e+00 1110.9 1639 42.5
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 0.0e+00 1106.3 1642 42.8
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1086.2 1620 42.7
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 0.0e+00 1084.3 1620 42.7
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 1076.2 1617 42.6
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 0.0e+00 1076.2 1617 42.7
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 1.2e-311 1074.7 1617 42.7
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 2.7e-309 1066.2 1685 41.2
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 1.9e-302 1043.5 1676 41.6
Oeu036138.2 Olea europaea HOM05D003688 ORTHO05D004338 3.0e-300 1036.2 1185 51.0
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 3.5e-293 1012.7 1653 40.2
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 5.0e-279 965.7 1909 36.4
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 5.9e-272 942.2 905 57.9
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 7.9e-269 931.8 1724 36.9
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 2.2e-258 897.1 1396 41.3
MBI14_g36919_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 2.8e-258 896.7 1196 45.9
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 1.8e-252 877.5 1588 38.6
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 4.7e-245 852.8 1494 39.3
CAN.G326.3 Capsicum annuum HOM05D003688 ORTHO05D004338 7.5e-227 792.3 761 59.7
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 1.3e-218 765.0 891 50.4
Cpa.g.sc228.14 Carica papaya HOM05D003688 ORTHO05D004338 2.3e-212 744.2 826 53.0
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 1.6e-208 731.5 1806 32.2
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 2.8e-205 720.7 1286 39.2
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 6.0e-200 703.0 1651 32.9
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.7e-199 701.4 1798 31.2
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 2.4e-196 691.0 1638 33.2
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 8.9e-196 689.1 1669 32.5
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.1e-190 672.2 1767 30.4
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 8.1e-189 666.0 1732 30.4
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 8.1e-189 666.0 1732 30.4
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 6.9e-188 662.9 1766 30.7
Nitab4.5_0003845g0020 Nicotiana tabacum HOM05D003688 ORTHO05D004338 8.7e-183 646.0 823 48.8
Nitab4.5_0006677g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 4.8e-181 640.2 858 47.3
Peaxi162Scf00094g00138 Petunia axillaris HOM05D003688 ORTHO05D004338 3.7e-165 587.4 891 43.9
BcaC03g18435 Brassica carinata HOM05D003688 ORTHO05D004338 1.0e-135 489.6 1111 35.6
Oeu051936.1 Olea europaea HOM05D003688 ORTHO05D004338 4.1e-132 477.6 435 60.0
Os01g0148050 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 2.7e-128 464.9 939 36.6
VMungo1383G2756 Vigna mungo HOM05D003688 ORTHO05D004338 4.0e-127 461.1 473 54.5
CAN.G326.2 Capsicum annuum HOM05D003688 ORTHO05D004338 5.2e-127 460.7 353 68.3
Cpa.g.sc228.13 Carica papaya HOM05D003688 ORTHO05D004338 5.2e-127 460.7 466 55.4
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 4.1e-116 424.5 1765 26.2
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 2.9e-109 401.7 1081 32.1
Atru.chr8.1976 Acer truncatum HOM05D003688 ORTHO05D004338 3.4e-94 351.7 469 44.1
Os01g0148000 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 6.4e-69 267.7 427 38.2
Oeu051935.1 Olea europaea HOM05D003688 ORTHO05D004338 7.9e-67 260.8 268 52.6
Oeu039697.1 Olea europaea HOM05D003688 ORTHO05D004338 6.2e-56 224.6 230 53.5
SHI12676 Sapria himalayana HOM05D003688 ORTHO05D004338 2.1e-48 199.5 447 35.6
Atru.chr8.1977 Acer truncatum HOM05D003688 ORTHO05D004338 2.7e-43 182.6 163 59.5
PRCOL_00001936 Prasinoderma coloniale HOM05D003688 ORTHO05D004338 1.0e-37 164.1 1204 23.7
Psat2g029320 Pisum sativum HOM05D003688 ORTHO05D017064 5.7e-33 148.3 180 45.6
Lsat_1_v5_gn_4_33481 Lactuca sativa HOM05D003688 ORTHO05D004338 1.7e-32 146.7 152 55.9
Haze_03516 Corylus avellana HOM05D003688 ORTHO05D004338 1.3e-29 137.1 185 42.2
Pp3c15_3560 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.0e-25 123.2 356 28.7
Pp3c7_22570 Physcomitrium patens HOM05D003688 ORTHO05D004338 5.7e-25 121.7 820 22.1
Mapoly0028s0055 Marchantia polymorpha HOM05D003688 ORTHO05D004338 7.4e-25 121.3 809 21.9
Pp3c17_2850 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.7e-24 119.0 281 29.5
Pp3c2_29090 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.7e-24 119.0 337 27.9
Pp3c9_4700 Physcomitrium patens HOM05D003688 ORTHO05D004338 6.3e-24 118.2 363 27.3
MBI19_g16672_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 9.4e-20 104.4 119 49.6
CAN.G325.1 Capsicum annuum HOM05D003688 ORTHO05D004338 3.6e-19 102.4 54 88.9
AagrBONN_evm.TU.Sc2ySwM_344.5255 Anthoceros agrestis HOM05D003688 ORTHO05D004338 6.1e-19 101.7 870 21.3
SHI12675 Sapria himalayana HOM05D003688 ORTHO05D004338 6.1e-19 101.7 181 37.6
vmacro07102 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 6.1e-19 101.7 78 65.4
Psat5g038080 Pisum sativum HOM05D001700 ORTHO05D016448 2.6e-17 96.3 214 37.4
Pp3c22_8160 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.2e-14 87.4 87 47.1
Sc20g0004930 Simmondsia chinensis HOM05D003688 ORTHO05D004338 1.3e-13 84.0 49 77.6
GSVIVG01034167001 Vitis vinifera HOM05D003688 ORTHO05D004338 1.2e-11 77.4 82 51.2
Cfa025161 Carpinus fangiana HOM05D003688 ORTHO05D004338 1.0e-10 74.3 501 20.8
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 1.4e-07 63.9 55 58.2


User provided reference genes

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