Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.6e-219 765.8 372 100.0
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 4.9e-213 744.2 372 96.8
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 4.9e-189 664.5 372 85.5
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 2.1e-184 649.0 420 76.2
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 1.2e-174 616.7 351 85.5
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 9.0e-167 590.5 361 79.8
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 6.7e-162 574.3 366 74.9
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 1.8e-159 566.2 376 73.1
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 1.1e-156 557.0 378 72.0
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 2.7e-155 552.4 368 72.6
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 5.9e-150 534.6 366 70.8
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.8e-149 531.9 372 70.4
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 5.0e-149 531.6 366 69.7
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 1.4e-148 530.0 358 70.4
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 1.5e-145 520.0 353 75.9
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 2.0e-145 519.6 364 69.2
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 2.6e-145 519.2 362 68.5
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 2.6e-142 509.2 364 66.2
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 1.3e-141 506.9 364 65.4
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 5.5e-140 501.5 359 67.4
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 1.2e-139 500.4 360 67.8
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 1.6e-139 500.0 359 66.0
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 1.6e-139 500.0 360 66.1
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 3.6e-139 498.8 360 65.6
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 6.1e-139 498.0 438 58.9
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 1.4e-138 496.9 369 64.2
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 2.3e-138 496.1 365 67.4
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 5.2e-138 495.0 359 66.3
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 8.8e-138 494.2 359 66.3
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.1e-137 493.8 361 65.1
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.3e-137 492.3 361 65.4
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 9.7e-137 490.7 356 65.4
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 4.8e-136 488.4 355 65.4
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 4.8e-136 488.4 360 65.8
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.1e-135 487.3 368 64.9
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.1e-135 487.3 368 64.9
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.1e-135 487.3 358 65.4
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.4e-135 486.9 357 63.9
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 1.8e-135 486.5 359 63.5
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 3.1e-135 485.7 359 64.3
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 3.1e-135 485.7 357 66.7
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 3.1e-135 485.7 491 53.0
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 4.1e-135 485.3 359 65.7
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 7.0e-135 484.6 360 65.0
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 7.0e-135 484.6 359 65.2
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 7.0e-135 484.6 359 64.1
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 9.1e-135 484.2 363 64.5
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 1.6e-134 483.4 359 63.5
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 2.0e-134 483.0 364 64.6
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 2.6e-134 482.6 332 71.1
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 3.5e-134 482.3 364 62.9
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 3.5e-134 482.3 353 65.2
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 7.7e-134 481.1 356 66.3
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 7.7e-134 481.1 359 64.3
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 5.0e-133 478.4 365 63.3
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 6.5e-133 478.0 358 63.1
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 8.5e-133 477.6 367 62.7
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 1.1e-132 477.2 359 64.3
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 1.9e-132 476.5 358 63.4
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 3.2e-132 475.7 367 61.9
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 7.2e-132 474.6 361 62.6
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 7.2e-132 474.6 362 63.0
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 9.4e-132 474.2 363 62.5
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 1.2e-131 473.8 357 62.2
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 3.0e-130 469.2 330 66.4
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 3.0e-130 469.2 368 62.5
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.3e-128 463.8 365 63.6
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 2.2e-128 463.0 363 62.0
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 2.2e-128 463.0 368 62.0
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 6.3e-128 461.5 355 61.7
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 8.2e-128 461.1 361 61.5
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 3.1e-127 459.1 432 54.4
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 4.1e-127 458.8 356 61.8
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 5.3e-127 458.4 355 62.0
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 9.1e-127 457.6 355 61.7
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 2.7e-126 456.1 369 61.2
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 3.5e-126 455.7 359 60.4
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 3.5e-126 455.7 356 62.4
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 5.9e-126 454.9 359 60.7
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 5.9e-126 454.9 355 61.4
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 1.0e-125 454.1 359 63.2
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 1.7e-125 453.4 357 63.6
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 2.2e-125 453.0 360 60.6
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 2.2e-125 453.0 360 60.6
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 3.8e-125 452.2 360 60.6
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 1.5e-124 450.3 360 60.6
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 4.2e-124 448.7 360 61.4
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 7.2e-124 448.0 360 60.3
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 2.7e-123 446.0 360 60.8
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 3.6e-123 445.7 359 60.4
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 1.0e-122 444.1 355 60.0
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 9.8e-121 437.6 359 59.9
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 8.5e-117 424.5 404 54.0
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 8.5e-117 424.5 315 65.7
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 1.4e-111 407.1 364 55.5
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 7.0e-111 404.8 342 54.4
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 9.2e-111 404.4 359 57.4
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 8.6e-109 397.9 295 64.1
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 1.1e-108 397.5 358 54.2
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 7.3e-108 394.8 358 57.5
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 9.5e-108 394.4 272 68.4
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 9.8e-105 384.4 364 54.9
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 3.7e-104 382.5 362 50.6
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 8.3e-104 381.3 385 50.4
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 7.0e-103 378.3 249 71.9
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 3.5e-102 375.9 337 57.3
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 2.5e-92 343.2 293 58.7
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 2.8e-91 339.7 296 59.1
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 2.8e-91 339.7 422 42.2
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 5.2e-90 335.5 206 73.8
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.6e-89 333.2 213 72.3
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 4.4e-81 305.8 375 41.6
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 5.8e-81 305.4 415 40.0
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 4.1e-79 299.3 359 45.1
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 4.6e-78 295.8 154 85.1
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 1.8e-74 283.9 364 40.7
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 3.6e-67 259.6 234 55.1
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 2.6e-65 253.4 132 87.9
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 2.2e-64 250.4 128 85.9
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 2.4e-55 220.3 264 46.6
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 2.4e-55 220.3 264 46.6
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 2.4e-42 177.2 209 46.4
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 4.1e-42 176.4 209 46.4
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 1.7e-40 171.0 281 33.5
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 1.4e-39 167.9 160 54.4
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 1.6e-38 164.5 208 45.7
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 6.1e-38 162.5 83 84.3
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 9.4e-31 138.7 75 86.7
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 2.9e-24 117.1 128 51.6
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 1.4e-23 114.8 129 47.3
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 4.4e-20 103.2 121 47.9
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 9.7e-20 102.1 205 32.7
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.6e-14 84.7 102 48.0


User provided reference genes

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