Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 3.2e-170 601.7 309 100.0
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 8.4e-126 454.1 310 76.8
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 9.3e-125 450.7 308 76.3
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 5.1e-123 444.9 309 75.7
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 1.5e-119 433.3 310 73.2
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 5.8e-119 431.4 311 73.6
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 9.9e-119 430.6 311 71.4
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 9.9e-119 430.6 311 73.3
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 2.9e-118 429.1 310 73.5
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 6.4e-118 427.9 309 71.8
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 8.4e-118 427.6 311 73.0
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.1e-117 427.2 311 72.7
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 1.1e-117 427.2 308 72.7
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 1.1e-117 427.2 311 73.0
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 1.6e-116 423.3 314 71.3
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 2.7e-116 422.5 310 69.4
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 6.0e-116 421.4 311 69.8
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 5.6e-114 414.8 311 69.5
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 9.6e-114 414.1 315 71.1
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 1.3e-113 413.7 310 70.6
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 8.1e-113 411.0 321 68.2
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 8.1e-113 411.0 315 70.8
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 8.1e-113 411.0 315 70.2
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 8.1e-113 411.0 313 70.6
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 1.8e-112 409.8 310 69.0
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 3.1e-112 409.1 315 69.2
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.1e-112 409.1 309 69.3
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 3.1e-112 409.1 309 69.3
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 3.1e-112 409.1 305 69.8
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.1e-112 409.1 311 71.4
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 6.9e-112 407.9 309 68.9
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 9.0e-112 407.5 309 70.2
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 9.0e-112 407.5 316 69.6
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 9.0e-112 407.5 319 68.0
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.2e-111 407.1 309 70.2
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.2e-111 407.1 309 70.2
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.5e-111 406.8 309 69.3
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 2.0e-111 406.4 313 69.0
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 2.0e-111 406.4 321 67.3
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 2.0e-111 406.4 310 68.7
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 7.6e-111 404.4 320 67.2
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 7.6e-111 404.4 316 69.6
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 9.9e-111 404.1 309 67.6
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 1.3e-110 403.7 315 67.6
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.7e-110 403.3 318 67.9
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 2.2e-110 402.9 320 67.2
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 2.2e-110 402.9 321 66.4
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 2.9e-110 402.5 321 67.0
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 3.8e-110 402.1 348 62.4
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 4.9e-110 401.7 308 68.2
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 4.9e-110 401.7 308 68.2
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 1.1e-109 400.6 309 68.6
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 1.4e-109 400.2 314 65.9
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 4.2e-109 398.7 317 67.5
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 4.2e-109 398.7 311 67.2
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 4.2e-109 398.7 317 67.5
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.6e-108 396.7 311 67.8
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 2.1e-108 396.4 311 65.3
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 3.5e-108 395.6 309 68.3
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 3.5e-108 395.6 311 66.6
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 4.6e-108 395.2 315 66.3
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 7.9e-108 394.4 325 64.6
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 7.9e-108 394.4 309 67.3
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 7.9e-108 394.4 309 67.3
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 1.0e-107 394.0 324 64.8
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 1.3e-107 393.7 315 65.7
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 3.9e-107 392.1 312 65.7
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 3.9e-107 392.1 309 67.0
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 5.1e-107 391.7 317 65.6
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 5.1e-107 391.7 309 68.0
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 5.1e-107 391.7 317 65.9
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 6.7e-107 391.3 309 68.3
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 8.7e-107 391.0 321 66.7
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.5e-106 390.2 315 66.7
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.5e-106 390.2 322 66.5
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 1.9e-106 389.8 324 65.7
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 3.3e-106 389.0 315 66.7
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 7.4e-106 387.9 315 67.0
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 9.6e-106 387.5 310 67.1
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 1.3e-105 387.1 310 67.7
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 1.3e-105 387.1 310 67.7
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 1.3e-105 387.1 310 67.7
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.6e-105 386.7 309 67.3
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.6e-105 386.7 309 67.3
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 1.6e-105 386.7 318 65.1
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 2.1e-105 386.3 315 64.4
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 2.1e-105 386.3 309 67.0
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 2.8e-105 386.0 309 66.3
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 2.4e-104 382.9 309 66.7
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 6.9e-104 381.3 310 65.5
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 2.6e-103 379.4 334 63.8
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 1.0e-102 377.5 349 60.2
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 1.0e-102 377.5 310 65.2
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 3.2e-101 372.5 318 63.5
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.8e-99 366.7 217 85.3
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 3.0e-99 365.9 267 73.8
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 5.7e-98 361.7 309 63.4
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 4.8e-97 358.6 249 73.5
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 1.4e-96 357.1 289 66.1
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.7e-94 350.1 310 63.2
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 2.9e-94 349.4 340 56.5
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 2.5e-93 346.3 333 58.6
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 1.6e-92 343.6 267 69.7
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 2.1e-92 343.2 286 64.7
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 3.5e-92 342.4 351 55.3
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 2.3e-91 339.7 203 82.8
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 4.3e-90 335.5 264 67.8
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 1.3e-86 323.9 306 56.2
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 2.2e-86 323.2 211 77.3
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 2.9e-86 322.8 319 55.2
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.8e-83 313.5 271 62.4
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 6.7e-83 311.6 309 58.6
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 2.8e-81 306.2 308 56.8
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 6.3e-81 305.1 232 68.1
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 3.4e-79 299.3 309 54.0
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 3.8e-78 295.8 185 80.0
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 1.1e-77 294.3 309 55.7
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 3.6e-68 262.7 181 75.7
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 7.0e-64 248.4 296 50.3
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 1.7e-62 243.8 253 58.9
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 2.5e-61 240.0 261 53.3
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 3.0e-59 233.0 191 70.7
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 7.5e-58 228.4 384 40.6
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 2.3e-46 190.3 232 45.3
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 1.1e-45 188.0 267 47.6
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.5e-45 186.8 310 42.6
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 4.4e-42 176.0 117 77.8
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.3e-41 174.5 197 51.8
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 1.6e-39 167.5 239 42.7
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 7.8e-39 165.2 141 64.5
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 8.6e-38 161.8 199 45.2
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.6e-36 156.4 95 83.2
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 5.8e-34 149.1 96 82.3
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 7.5e-34 148.7 122 68.0
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.2e-33 147.1 239 43.9
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 6.0e-31 139.0 126 59.5
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 6.0e-31 139.0 126 59.5
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 7.8e-31 138.7 93 78.5
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.7e-28 129.4 86 79.1
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.4e-27 127.9 189 41.3
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 1.3e-25 121.3 230 38.7
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 7.8e-23 112.1 98 64.3
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 2.1e-20 104.0 144 46.5
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 4.6e-15 86.3 61 70.5
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 5.6e-13 79.3 98 49.0
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 1.3e-09 68.2 64 51.6
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 2.7e-07 60.5 46 60.9
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.7e-07 60.5 34 76.5
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 4.6e-07 59.7 133 35.3
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.3e-06 58.2 62 54.8
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 8.7e-06 55.5 57 59.6


User provided reference genes

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