Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 1.1e-229 799.7 415 100.0
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 7.6e-215 750.4 415 92.5
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 2.5e-210 735.3 415 89.9
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 9.6e-210 733.4 415 90.4
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 9.6e-202 706.8 414 87.0
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 8.1e-201 703.7 415 87.5
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 1.0e-198 696.8 413 85.5
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 2.9e-198 695.3 413 84.5
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 3.8e-198 694.9 409 86.1
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 8.4e-198 693.7 413 85.5
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 8.4e-198 693.7 415 84.1
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 3.2e-197 691.8 409 85.8
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 3.2e-197 691.8 413 85.5
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 4.2e-197 691.4 413 85.0
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 5.5e-197 691.0 413 84.0
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 7.9e-196 687.2 415 84.8
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 7.9e-196 687.2 411 84.4
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 3.9e-195 684.9 413 84.5
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 5.1e-195 684.5 416 84.4
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 6.7e-195 684.1 413 83.5
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.5e-194 682.9 413 84.0
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.5e-194 682.9 414 83.1
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 1.9e-194 682.6 413 83.5
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.5e-194 682.2 414 83.6
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 3.3e-194 681.8 413 83.8
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 3.3e-194 681.8 413 83.8
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 5.7e-194 681.0 413 83.5
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 7.4e-194 680.6 414 82.9
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 9.6e-194 680.2 413 83.1
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 2.1e-193 679.1 444 79.1
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 2.8e-193 678.7 413 83.1
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 2.8e-193 678.7 412 83.3
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 2.8e-193 678.7 429 80.9
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 4.8e-193 677.9 413 83.1
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.8e-192 676.0 419 83.1
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 4.1e-192 674.9 413 82.3
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 5.3e-192 674.5 413 82.1
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 6.9e-192 674.1 413 82.1
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.2e-191 673.3 415 81.7
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 7.6e-191 670.6 413 82.3
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 7.6e-191 670.6 413 82.1
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 1.0e-190 670.2 411 83.5
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 1.7e-190 669.5 411 82.2
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.7e-190 669.5 413 82.3
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 2.9e-190 668.7 415 81.2
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 6.5e-190 667.5 415 81.9
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 8.4e-190 667.2 413 82.1
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 3.2e-189 665.2 420 81.7
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 3.2e-189 665.2 413 82.1
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 7.2e-189 664.1 411 81.5
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 9.3e-189 663.7 413 80.6
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.2e-188 663.3 409 82.4
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 1.2e-188 663.3 413 80.4
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 1.6e-188 662.9 413 81.4
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 2.1e-188 662.5 413 81.4
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 2.7e-188 662.1 413 81.1
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 2.7e-188 662.1 413 82.1
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 3.5e-188 661.8 413 81.1
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 7.9e-188 660.6 413 81.1
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 7.9e-188 660.6 413 81.1
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 7.9e-188 660.6 413 81.1
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 7.9e-188 660.6 413 80.4
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.0e-187 660.2 413 80.6
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.3e-187 659.8 413 80.1
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.3e-187 659.8 413 80.6
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.8e-187 659.4 413 80.9
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.0e-187 658.7 413 80.1
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 5.1e-187 657.9 411 80.8
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 6.7e-187 657.5 413 80.9
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 2.5e-186 655.6 413 80.4
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 3.3e-186 655.2 413 79.7
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 4.3e-186 654.8 412 80.8
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 1.8e-184 649.4 413 80.1
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.5e-183 646.4 425 78.4
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.5e-183 646.4 425 78.4
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 1.5e-183 646.4 414 79.7
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 2.6e-183 645.6 425 78.1
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 3.4e-183 645.2 413 78.5
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 3.2e-181 638.6 413 78.0
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 1.8e-179 632.9 409 79.0
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 3.9e-179 631.7 410 78.8
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.5e-178 629.0 413 78.0
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 7.4e-178 627.5 437 74.8
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 5.3e-176 621.3 413 76.8
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 7.7e-175 617.5 414 75.6
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 2.9e-174 615.5 370 84.3
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 8.5e-174 614.0 374 83.2
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 2.1e-172 609.4 414 73.4
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 6.1e-172 607.8 414 73.7
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 3.9e-171 605.1 415 71.8
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 5.1e-171 604.7 415 75.7
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.4e-168 596.7 405 76.5
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 4.7e-164 581.6 412 70.9
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 1.3e-161 573.5 411 73.7
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 1.3e-161 573.5 413 72.9
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 2.4e-160 569.3 410 72.4
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 2.0e-159 566.2 370 79.2
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 4.7e-156 555.1 323 86.7
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 1.2e-154 550.4 417 69.8
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 1.8e-152 543.1 409 67.2
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 1.0e-150 537.3 484 62.8
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 6.1e-148 528.1 410 69.3
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 9.2e-144 514.2 398 65.6
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 3.8e-142 508.8 412 62.1
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 1.4e-139 500.4 405 60.2
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 2.5e-133 479.6 303 79.5
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.3e-133 479.2 320 79.1
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.3e-133 478.8 281 86.5
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 1.4e-131 473.8 295 80.3
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 5.4e-128 461.8 257 90.3
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 4.7e-116 422.2 314 69.4
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 4.0e-115 419.1 256 81.2
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.2e-111 407.5 284 72.2
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 7.3e-109 398.3 313 67.7
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 4.8e-100 369.0 409 48.9
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 3.4e-98 362.8 284 67.3
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 2.9e-97 359.8 292 68.5
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 6.7e-86 322.0 191 85.9
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 1.5e-85 320.9 200 83.5
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.3e-77 292.7 238 63.9
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 1.4e-75 287.7 186 76.3
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.0e-74 283.9 173 82.7
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-69 268.1 199 67.8
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 1.8e-62 244.2 399 36.8
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.8e-62 241.9 204 64.7
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.4e-59 233.8 139 84.9
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 2.7e-55 220.3 400 33.2
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 4.4e-53 213.0 318 36.8
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 5.7e-53 212.6 219 53.9
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 2.2e-49 200.7 121 79.3
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.2e-48 196.8 198 60.1
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.7e-47 193.0 126 75.4
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.8e-44 183.0 176 60.2
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-43 181.8 160 63.1
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 1.3e-41 174.9 102 83.3
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.5e-37 161.4 113 70.8
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 4.4e-37 159.8 413 31.2
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 7.7e-34 149.1 83 86.7
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 4.2e-32 143.3 107 63.6
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.2e-29 135.2 80 80.0
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 5.4e-27 126.3 115 62.6
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 3.2e-19 100.5 99 59.6
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.6e-18 98.2 51 92.2
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 2.7e-18 97.4 154 42.2
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 1.6e-15 88.2 114 51.8
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 4.7e-15 86.7 143 43.4
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 1.2e-13 82.0 59 78.0
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 4.4e-13 80.1 146 41.8
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.4e-12 76.3 50 74.0
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-11 75.5 72 59.7
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.7e-09 68.2 55 67.3
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 5.0e-09 66.6 40 82.5
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.6e-07 61.6 82 50.0


User provided reference genes

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